Gvermi12430.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12430.t1
Unique NameGvermi12430.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length148
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4728607..4729199 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMD070CT
PFAMsFKBP_C
Max annot lvl2759|Eukaryota
KEGG koko:K01802
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009532,GO:0009534,GO:0009536,GO:0009543,GO:0009570,GO:0009579,GO:0031976,GO:0031977,GO:0031978,GO:0031984,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464
Evalue4.03e-38
EggNOG OGsCOG0545@1|root,KOG0552@2759|Eukaryota
EC5.2.1.8
Descriptionhistone peptidyl-prolyl isomerization
COG categoryO
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12430Gvermi12430Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4728607..4729199 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12430.t1Gvermi12430.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4728607..4729199 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12430.t1.start1Gvermi12430.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4728607..4728609 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12430.t1.CDS1Gvermi12430.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4728607..4728831 +
Gvermi12430.t1.CDS2Gvermi12430.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4728981..4729199 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12430.t1.exon1Gvermi12430.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4728607..4728831 +
Gvermi12430.t1.exon2Gvermi12430.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4728981..4729199 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12430.t1.intron1Gvermi12430.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 4728832..4728980 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12430.t1.stop1Gvermi12430.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4729197..4729199 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12430.t1 ID=Gvermi12430.t1|Name=Gvermi12430.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=148bp
MAATAGSVLAATSSRAAAPASVQYSVVKSGDGPTAAVGDLVGIRFKGMYN
GVVFDNLFNESTPYFYRVGSGVILKGLEEAVLKMKVGDVYDLTIPGELAF
GTKGRRASAGKPSIPPNATVSYTLELTTIPGKEQELLESVDSDQQDA*
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spliced messenger RNA

>Gvermi12430.t1 ID=Gvermi12430.t1|Name=Gvermi12430.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=444bp|location=Sequence derived from alignment at ScGOVlb_3404:4728607..4729199+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGCCACGGCCGGCTCCGTGCTCGCGGCCACGTCCTCGCGCGCCGC
CGCGCCCGCGTCCGTGCAGTACTCCGTCGTCAAGTCCGGCGACGGCCCGA
CCGCGGCGGTGGGCGACCTCGTCGGCATCCGCTTCAAGGGCATGTACAAC
GGCGTCGTCTTCGACAACCTCTTCAACGAGTCCACGCCGTACTTTTACCG
CGTCGGCTCCGGCGTCATTCTCAAGGGGCTGGAAGAGGCCGTCTTGAAGA
TGAAAGTGGGCGATGTCTACGACCTCACCATCCCCGGGGAGCTGGCGTTC
GGTACAAAAGGGCGTCGCGCCAGCGCCGGTAAGCCTTCCATTCCGCCAAA
CGCCACAGTCTCGTACACACTGGAACTTACTACTATCCCCGGCAAGGAGC
AAGAGCTGCTGGAGAGCGTTGATTCAGACCAACAGGACGCCTGA
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protein sequence of Gvermi12430.t1

>Gvermi12430.t1 ID=Gvermi12430.t1|Name=Gvermi12430.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=148bp
MAATAGSVLAATSSRAAAPASVQYSVVKSGDGPTAAVGDLVGIRFKGMYN
GVVFDNLFNESTPYFYRVGSGVILKGLEEAVLKMKVGDVYDLTIPGELAF
GTKGRRASAGKPSIPPNATVSYTLELTTIPGKEQELLESVDSDQQDA*
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mRNA from alignment at ScGOVlb_3404:4728607..4729199+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12430.t1 ID=Gvermi12430.t1|Name=Gvermi12430.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=593bp|location=Sequence derived from alignment at ScGOVlb_3404:4728607..4729199+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCGCCACGGCCGGCTCCGTGCTCGCGGCCACGTCCTCGCGCGCCGC
CGCGCCCGCGTCCGTGCAGTACTCCGTCGTCAAGTCCGGCGACGGCCCGA
CCGCGGCGGTGGGCGACCTCGTCGGCATCCGCTTCAAGGGCATGTACAAC
GGCGTCGTCTTCGACAACCTCTTCAACGAGTCCACGCCGTACTTTTACCG
CGTCGGCTCCGGCGTCATTCTCAAGGTACGTTGCGCCCCGCGCCGCAGCC
CCCCGCCGTCGCCCCGCTCGCTGACCTTTCACAAGCCGCGAATGCACCCA
TACGCTCTCATATGGCGATAACCGCTCCGTCTGTCTCATTGCGCCGCACT
CTCCACACGCGCGTGTAACAACAGGGGCTGGAAGAGGCCGTCTTGAAGAT
GAAAGTGGGCGATGTCTACGACCTCACCATCCCCGGGGAGCTGGCGTTCG
GTACAAAAGGGCGTCGCGCCAGCGCCGGTAAGCCTTCCATTCCGCCAAAC
GCCACAGTCTCGTACACACTGGAACTTACTACTATCCCCGGCAAGGAGCA
AGAGCTGCTGGAGAGCGTTGATTCAGACCAACAGGACGCCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4728607..4729199+

>Gvermi12430.t1 ID=Gvermi12430.t1|Name=Gvermi12430.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=444bp|location=Sequence derived from alignment at ScGOVlb_3404:4728607..4729199+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCGCCACGGCCGGCTCCGTGCTCGCGGCCACGTCCTCGCGCGCCGC
CGCGCCCGCGTCCGTGCAGTACTCCGTCGTCAAGTCCGGCGACGGCCCGA
CCGCGGCGGTGGGCGACCTCGTCGGCATCCGCTTCAAGGGCATGTACAAC
GGCGTCGTCTTCGACAACCTCTTCAACGAGTCCACGCCGTACTTTTACCG
CGTCGGCTCCGGCGTCATTCTCAAGGGGCTGGAAGAGGCCGTCTTGAAGA
TGAAAGTGGGCGATGTCTACGACCTCACCATCCCCGGGGAGCTGGCGTTC
GGTACAAAAGGGCGTCGCGCCAGCGCCGGTAAGCCTTCCATTCCGCCAAA
CGCCACAGTCTCGTACACACTGGAACTTACTACTATCCCCGGCAAGGAGC
AAGAGCTGCTGGAGAGCGTTGATTCAGACCAACAGGACGCCTGA
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