Gvermi12426.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12426.t1
Unique Name	Gvermi12426.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	302

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:4687942..4688847 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	42345.XP_008782633.1
PFAMs	HAD_2
Max annot lvl	35493\|Streptophyta
Evalue	3.55e-53
EggNOG OGs	COG0637@1\|root,KOG2914@2759\|Eukaryota,37PQC@33090\|Viridiplantae,3GA0S@35493\|Streptophyta,3KSAY@4447\|Liliopsida
Description	Haloacid dehalogenase-like hydrolase
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12426	Gvermi12426	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3404 4687942..4688847 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12426.t1.start1	Gvermi12426.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_3404 4687942..4687944 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12426.t1.CDS1	Gvermi12426.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3404 4687942..4688847 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12426.t1.exon1	Gvermi12426.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3404 4687942..4688847 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12426.t1.stop1	Gvermi12426.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_3404 4688845..4688847 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12426.t1	Gvermi12426.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3404 4687942..4688847 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3404:4687942..4688847+
coding sequence from alignment at ScGOVlb_3404:4687942..4688847+

mRNA sequence

>Gvermi12426.t1 ID=Gvermi12426.t1|Name=Gvermi12426.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=302bp
LQRSLSNLDRLLEGTEPRYTTWQQDRASTSLSTFSYDNPLLGADELNESL
RPSHLQRHRHVLAPDEQFAAVFMWDTVVLNARELEMQAWSVVAAENTLPP
PDMQDIVRAEDMAPEAAVQRVFYWIAEWGDVKRYVFRKAEVYQSLYASYE
FHIRNGLFDWLRSLDQYGVKSILCSPHPRRFVMDVLQRVGLASFFTSADI
VTAEDECDSLEQLFLLAAVKAQRPPGKCVVFTDRPSGVTAAHDVSAKVVA
LLGVHPAYEVKSADQTVADYQDLVVYNIRRLFSQQGAEFMDPRTELEVDR
T*

spliced messenger RNA

>Gvermi12426.t1 ID=Gvermi12426.t1|Name=Gvermi12426.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=906bp|location=Sequence derived from alignment at ScGOVlb_3404:4687942..4688847+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
TTGCAGCGCTCGCTGTCCAACCTGGACCGCCTTCTGGAAGGCACGGAGCC
GCGCTACACCACCTGGCAGCAGGACCGCGCCAGCACCTCCCTTTCGACCT
TCAGCTACGACAACCCGCTGCTCGGTGCCGACGAGCTCAACGAGTCGCTG
AGACCGTCCCATCTGCAGCGCCACCGACATGTGCTCGCCCCGGACGAGCA
ATTTGCCGCCGTCTTTATGTGGGATACCGTCGTGTTAAATGCACGCGAGC
TCGAGATGCAGGCGTGGTCTGTCGTCGCTGCGGAGAACACTCTGCCGCCG
CCAGACATGCAAGACATCGTGCGTGCAGAGGACATGGCGCCCGAGGCCGC
CGTGCAGCGAGTTTTCTACTGGATTGCAGAGTGGGGCGACGTAAAGCGCT
ACGTTTTTCGCAAGGCCGAGGTGTACCAAAGTCTTTACGCTTCTTATGAG
TTTCATATCCGAAACGGCCTCTTTGACTGGCTGCGCAGTCTTGACCAGTA
TGGAGTCAAGAGCATTTTGTGCTCTCCACATCCCAGACGCTTTGTCATGG
ACGTGCTTCAGCGAGTCGGCCTCGCGTCCTTCTTCACTTCGGCAGATATC
GTTACGGCGGAAGATGAGTGTGACTCGCTCGAACAACTCTTCTTACTGGC
AGCCGTCAAGGCGCAGCGACCGCCTGGTAAGTGCGTCGTCTTCACAGATA
GGCCGTCCGGTGTCACAGCTGCCCACGACGTAAGCGCAAAAGTCGTTGCG
CTTTTGGGAGTCCATCCCGCTTACGAGGTCAAGTCTGCCGACCAAACTGT
TGCCGACTATCAAGATCTCGTTGTATATAACATTCGCCGCCTGTTTTCAC
AGCAGGGAGCTGAGTTTATGGATCCCCGTACCGAGCTTGAGGTTGACCGC
ACGTAA

protein sequence of Gvermi12426.t1

>Gvermi12426.t1 ID=Gvermi12426.t1|Name=Gvermi12426.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=302bp
LQRSLSNLDRLLEGTEPRYTTWQQDRASTSLSTFSYDNPLLGADELNESL
RPSHLQRHRHVLAPDEQFAAVFMWDTVVLNARELEMQAWSVVAAENTLPP
PDMQDIVRAEDMAPEAAVQRVFYWIAEWGDVKRYVFRKAEVYQSLYASYE
FHIRNGLFDWLRSLDQYGVKSILCSPHPRRFVMDVLQRVGLASFFTSADI
VTAEDECDSLEQLFLLAAVKAQRPPGKCVVFTDRPSGVTAAHDVSAKVVA
LLGVHPAYEVKSADQTVADYQDLVVYNIRRLFSQQGAEFMDPRTELEVDR
T*

mRNA from alignment at ScGOVlb_3404:4687942..4688847+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12426.t1 ID=Gvermi12426.t1|Name=Gvermi12426.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=906bp|location=Sequence derived from alignment at ScGOVlb_3404:4687942..4688847+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
TTGCAGCGCTCGCTGTCCAACCTGGACCGCCTTCTGGAAGGCACGGAGCC
GCGCTACACCACCTGGCAGCAGGACCGCGCCAGCACCTCCCTTTCGACCT
TCAGCTACGACAACCCGCTGCTCGGTGCCGACGAGCTCAACGAGTCGCTG
AGACCGTCCCATCTGCAGCGCCACCGACATGTGCTCGCCCCGGACGAGCA
ATTTGCCGCCGTCTTTATGTGGGATACCGTCGTGTTAAATGCACGCGAGC
TCGAGATGCAGGCGTGGTCTGTCGTCGCTGCGGAGAACACTCTGCCGCCG
CCAGACATGCAAGACATCGTGCGTGCAGAGGACATGGCGCCCGAGGCCGC
CGTGCAGCGAGTTTTCTACTGGATTGCAGAGTGGGGCGACGTAAAGCGCT
ACGTTTTTCGCAAGGCCGAGGTGTACCAAAGTCTTTACGCTTCTTATGAG
TTTCATATCCGAAACGGCCTCTTTGACTGGCTGCGCAGTCTTGACCAGTA
TGGAGTCAAGAGCATTTTGTGCTCTCCACATCCCAGACGCTTTGTCATGG
ACGTGCTTCAGCGAGTCGGCCTCGCGTCCTTCTTCACTTCGGCAGATATC
GTTACGGCGGAAGATGAGTGTGACTCGCTCGAACAACTCTTCTTACTGGC
AGCCGTCAAGGCGCAGCGACCGCCTGGTAAGTGCGTCGTCTTCACAGATA
GGCCGTCCGGTGTCACAGCTGCCCACGACGTAAGCGCAAAAGTCGTTGCG
CTTTTGGGAGTCCATCCCGCTTACGAGGTCAAGTCTGCCGACCAAACTGT
TGCCGACTATCAAGATCTCGTTGTATATAACATTCGCCGCCTGTTTTCAC
AGCAGGGAGCTGAGTTTATGGATCCCCGTACCGAGCTTGAGGTTGACCGC
ACGTAA

Coding sequence (CDS) from alignment at ScGOVlb_3404:4687942..4688847+

>Gvermi12426.t1 ID=Gvermi12426.t1|Name=Gvermi12426.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=906bp|location=Sequence derived from alignment at ScGOVlb_3404:4687942..4688847+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
TTGCAGCGCTCGCTGTCCAACCTGGACCGCCTTCTGGAAGGCACGGAGCC
GCGCTACACCACCTGGCAGCAGGACCGCGCCAGCACCTCCCTTTCGACCT
TCAGCTACGACAACCCGCTGCTCGGTGCCGACGAGCTCAACGAGTCGCTG
AGACCGTCCCATCTGCAGCGCCACCGACATGTGCTCGCCCCGGACGAGCA
ATTTGCCGCCGTCTTTATGTGGGATACCGTCGTGTTAAATGCACGCGAGC
TCGAGATGCAGGCGTGGTCTGTCGTCGCTGCGGAGAACACTCTGCCGCCG
CCAGACATGCAAGACATCGTGCGTGCAGAGGACATGGCGCCCGAGGCCGC
CGTGCAGCGAGTTTTCTACTGGATTGCAGAGTGGGGCGACGTAAAGCGCT
ACGTTTTTCGCAAGGCCGAGGTGTACCAAAGTCTTTACGCTTCTTATGAG
TTTCATATCCGAAACGGCCTCTTTGACTGGCTGCGCAGTCTTGACCAGTA
TGGAGTCAAGAGCATTTTGTGCTCTCCACATCCCAGACGCTTTGTCATGG
ACGTGCTTCAGCGAGTCGGCCTCGCGTCCTTCTTCACTTCGGCAGATATC
GTTACGGCGGAAGATGAGTGTGACTCGCTCGAACAACTCTTCTTACTGGC
AGCCGTCAAGGCGCAGCGACCGCCTGGTAAGTGCGTCGTCTTCACAGATA
GGCCGTCCGGTGTCACAGCTGCCCACGACGTAAGCGCAAAAGTCGTTGCG
CTTTTGGGAGTCCATCCCGCTTACGAGGTCAAGTCTGCCGACCAAACTGT
TGCCGACTATCAAGATCTCGTTGTATATAACATTCGCCGCCTGTTTTCAC
AGCAGGGAGCTGAGTTTATGGATCCCCGTACCGAGCTTGAGGTTGACCGC
ACGTAA