Gvermi12425.t2 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12425.t2
Unique NameGvermi12425.t2
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length794
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4684729..4687110 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog109871.XP_006676799.1
PFAMsNicastrin
Max annot lvl4751|Fungi
Evalue6.53e-21
EggNOG OGsKOG2657@1|root,KOG2657@2759|Eukaryota,39RQA@33154|Opisthokonta,3P03M@4751|Fungi
DescriptionNicastrin
COG categoryOT
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12425Gvermi12425Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4684729..4687110 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12425.t2.stop1Gvermi12425.t2.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4684729..4684731 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12425.t2.CDS1Gvermi12425.t2.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4684729..4687110 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12425.t2.exon1Gvermi12425.t2.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4684729..4687110 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12425.t2.start1Gvermi12425.t2.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4687108..4687110 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12425.t2Gvermi12425.t2Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4684729..4687110 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12425.t2 ID=Gvermi12425.t2|Name=Gvermi12425.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=794bp
MQPTLRLLASSAIALYLALLLAAFPIATALSLPKLGRFRRKCYTSLPMCI
MQSNNVSSRGCGQCDTDVREAPLREVRTESELTQVRLQGGRAIILIPERV
FFSKKVRSSISFWTNIDALIVYGGPPKRPNEFVDNGAANQTIDLLFNYSL
DETEPNRLYNFYPDGVGSDNRCDGNIPRRNNPGDCTFQQFIPFNIFYINA
SLSDQILRSAARFGDPNFVPDGNERGAFSPQFKLQSTGRMWACATTMTPT
PTTTISIDNTVSGQNAGSAVTSEQCLRDKTCLPIGGHSLWSALGRVNSRV
PAAQRKYLFITAPMDSFAFFPEFGMGAGAEIASLAVLMAVADRVAIYWRE
QHDEGDFERQPVYFALNAQSWGYAGSSRFLRDMLEFECTNEADFAKGERG
CTEPSIDNLKFKDFKDADIQVLNLGQLITPATTMDGPSDPQFFIHHEDGT
SNTLGDEFKKSFGQFDLNLERGGFDYESNVPLTPIDATQSFKFFNGSKDM
DVVSISNYAVNFSTEIYHSSLDTELRISHDGQRIPMYRAAHAIASAVIGI
AFGVEGRWEVNTTIVDNVITCMTGNWTDCSMAQDYLGKESENATVQPGNY
PGPFFPISVLKDHKPSGAAKLALIRAFFAHHDRFNESTVTCESENDCAVY
NRDINEKASPKSQSELFDAQCTRGRCVVSDTHTHRAFGGGINMIDKKGGF
ELESKYERESFDGNLPRQGDWTESFWDPDTGFCEQVQDSLAYEAVIFGVG
LCVLVLSFGFGIWLDYALFEDKVLDAEDESSISNMGDSLVPFV*
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spliced messenger RNA

>Gvermi12425.t2 ID=Gvermi12425.t2|Name=Gvermi12425.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2382bp|location=Sequence derived from alignment at ScGOVlb_3404:4684729..4687110- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCCTACCCTGCGCCTGTTGGCGTCTTCCGCCATTGCCTTGTATCT
CGCGCTCCTCCTCGCCGCCTTCCCCATCGCCACCGCACTCTCGCTCCCAA
AGCTCGGGCGCTTCCGTCGCAAGTGCTACACAAGCCTGCCCATGTGCATC
ATGCAGAGCAATAACGTTTCTTCGCGCGGCTGCGGTCAGTGCGACACAGA
CGTGCGCGAGGCTCCGCTGCGCGAGGTGCGAACCGAGTCAGAGCTCACCC
AGGTCAGGCTGCAGGGAGGCCGAGCCATAATTCTCATTCCCGAGCGCGTC
TTCTTTTCGAAGAAAGTCAGGTCAAGCATTAGTTTCTGGACCAACATTGA
CGCTCTCATTGTGTACGGGGGGCCTCCTAAACGCCCGAACGAATTCGTTG
ACAATGGCGCCGCCAACCAAACAATAGATCTACTCTTCAACTATTCGCTT
GATGAAACTGAACCCAACCGCCTGTACAACTTCTACCCGGATGGCGTCGG
CTCGGACAACCGTTGCGACGGCAACATTCCACGTCGCAACAACCCGGGCG
ATTGCACCTTTCAGCAGTTCATTCCTTTCAACATTTTTTATATCAATGCT
TCGCTGTCCGACCAAATTCTCCGTTCAGCTGCGCGATTTGGTGACCCCAA
CTTCGTTCCCGATGGAAATGAGAGAGGCGCCTTTTCCCCGCAGTTTAAAC
TTCAATCCACTGGTAGAATGTGGGCGTGCGCAACCACAATGACCCCAACC
CCTACCACAACAATATCAATCGACAACACTGTCAGTGGCCAGAACGCGGG
CTCTGCAGTAACCTCAGAGCAATGTCTGCGAGATAAGACTTGTCTCCCCA
TCGGTGGACATTCTTTGTGGTCTGCACTGGGTCGAGTCAACTCCAGAGTT
CCTGCAGCGCAGCGCAAGTATTTGTTTATCACAGCTCCAATGGACTCTTT
TGCGTTTTTCCCGGAGTTTGGAATGGGTGCCGGAGCCGAAATAGCCTCAT
TGGCTGTATTGATGGCTGTTGCAGATCGGGTGGCTATTTACTGGCGTGAA
CAACACGATGAGGGCGATTTTGAACGCCAACCGGTCTACTTTGCGCTAAA
TGCACAATCATGGGGGTACGCGGGCTCCTCAAGGTTTTTGCGAGATATGC
TAGAGTTTGAGTGTACGAATGAAGCCGATTTTGCCAAAGGTGAAAGAGGA
TGCACCGAGCCTTCCATTGACAATCTCAAGTTCAAGGATTTTAAAGACGC
TGATATTCAAGTTCTCAATCTCGGTCAATTGATAACGCCTGCCACAACTA
TGGATGGCCCCTCGGATCCACAGTTCTTCATTCATCATGAGGACGGGACA
AGTAATACGCTCGGAGATGAGTTCAAGAAGTCTTTTGGTCAATTTGACCT
TAACCTCGAGCGCGGCGGATTTGATTATGAGTCCAACGTACCACTGACTC
CAATTGATGCTACCCAAAGTTTCAAGTTCTTCAATGGAAGCAAGGACATG
GATGTTGTGAGTATCAGCAATTATGCTGTCAATTTTAGCACGGAAATCTA
TCATTCATCGTTGGACACCGAACTTCGAATAAGTCACGATGGCCAGCGAA
TACCAATGTACAGGGCTGCACATGCCATCGCATCAGCTGTGATTGGCATT
GCGTTTGGAGTAGAGGGACGGTGGGAAGTCAACACGACCATTGTTGACAA
CGTCATTACGTGCATGACAGGGAATTGGACCGACTGCTCTATGGCGCAGG
ACTACCTGGGGAAGGAGTCTGAAAACGCGACGGTTCAGCCTGGAAACTAT
CCTGGTCCTTTCTTTCCGATCAGCGTGCTTAAGGATCACAAACCCAGCGG
TGCTGCCAAGTTGGCGCTGATTCGAGCATTTTTCGCTCACCACGATAGAT
TTAATGAAAGCACAGTGACTTGTGAAAGTGAAAATGATTGTGCCGTATAC
AATCGGGACATTAATGAAAAAGCATCTCCGAAGAGCCAATCTGAACTCTT
TGATGCGCAATGCACTCGCGGGCGGTGCGTTGTCTCAGATACTCACACAC
ATAGAGCCTTCGGAGGCGGAATCAATATGATTGACAAGAAGGGAGGTTTT
GAGCTCGAAAGCAAGTACGAGAGAGAAAGTTTTGATGGAAATCTCCCACG
GCAGGGTGACTGGACGGAAAGCTTTTGGGATCCTGATACTGGATTTTGTG
AGCAAGTCCAAGATAGTCTCGCTTACGAGGCTGTTATATTTGGTGTCGGA
TTATGTGTTCTTGTTTTGAGCTTTGGTTTTGGCATCTGGCTCGACTACGC
CTTATTTGAGGACAAAGTCTTAGATGCAGAAGATGAATCAAGTATTTCAA
ACATGGGAGATTCCCTTGTACCATTTGTCTAG
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protein sequence of Gvermi12425.t2

>Gvermi12425.t2 ID=Gvermi12425.t2|Name=Gvermi12425.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=794bp
MQPTLRLLASSAIALYLALLLAAFPIATALSLPKLGRFRRKCYTSLPMCI
MQSNNVSSRGCGQCDTDVREAPLREVRTESELTQVRLQGGRAIILIPERV
FFSKKVRSSISFWTNIDALIVYGGPPKRPNEFVDNGAANQTIDLLFNYSL
DETEPNRLYNFYPDGVGSDNRCDGNIPRRNNPGDCTFQQFIPFNIFYINA
SLSDQILRSAARFGDPNFVPDGNERGAFSPQFKLQSTGRMWACATTMTPT
PTTTISIDNTVSGQNAGSAVTSEQCLRDKTCLPIGGHSLWSALGRVNSRV
PAAQRKYLFITAPMDSFAFFPEFGMGAGAEIASLAVLMAVADRVAIYWRE
QHDEGDFERQPVYFALNAQSWGYAGSSRFLRDMLEFECTNEADFAKGERG
CTEPSIDNLKFKDFKDADIQVLNLGQLITPATTMDGPSDPQFFIHHEDGT
SNTLGDEFKKSFGQFDLNLERGGFDYESNVPLTPIDATQSFKFFNGSKDM
DVVSISNYAVNFSTEIYHSSLDTELRISHDGQRIPMYRAAHAIASAVIGI
AFGVEGRWEVNTTIVDNVITCMTGNWTDCSMAQDYLGKESENATVQPGNY
PGPFFPISVLKDHKPSGAAKLALIRAFFAHHDRFNESTVTCESENDCAVY
NRDINEKASPKSQSELFDAQCTRGRCVVSDTHTHRAFGGGINMIDKKGGF
ELESKYERESFDGNLPRQGDWTESFWDPDTGFCEQVQDSLAYEAVIFGVG
LCVLVLSFGFGIWLDYALFEDKVLDAEDESSISNMGDSLVPFV*
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mRNA from alignment at ScGOVlb_3404:4684729..4687110-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12425.t2 ID=Gvermi12425.t2|Name=Gvermi12425.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2382bp|location=Sequence derived from alignment at ScGOVlb_3404:4684729..4687110- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAGCCTACCCTGCGCCTGTTGGCGTCTTCCGCCATTGCCTTGTATCT
CGCGCTCCTCCTCGCCGCCTTCCCCATCGCCACCGCACTCTCGCTCCCAA
AGCTCGGGCGCTTCCGTCGCAAGTGCTACACAAGCCTGCCCATGTGCATC
ATGCAGAGCAATAACGTTTCTTCGCGCGGCTGCGGTCAGTGCGACACAGA
CGTGCGCGAGGCTCCGCTGCGCGAGGTGCGAACCGAGTCAGAGCTCACCC
AGGTCAGGCTGCAGGGAGGCCGAGCCATAATTCTCATTCCCGAGCGCGTC
TTCTTTTCGAAGAAAGTCAGGTCAAGCATTAGTTTCTGGACCAACATTGA
CGCTCTCATTGTGTACGGGGGGCCTCCTAAACGCCCGAACGAATTCGTTG
ACAATGGCGCCGCCAACCAAACAATAGATCTACTCTTCAACTATTCGCTT
GATGAAACTGAACCCAACCGCCTGTACAACTTCTACCCGGATGGCGTCGG
CTCGGACAACCGTTGCGACGGCAACATTCCACGTCGCAACAACCCGGGCG
ATTGCACCTTTCAGCAGTTCATTCCTTTCAACATTTTTTATATCAATGCT
TCGCTGTCCGACCAAATTCTCCGTTCAGCTGCGCGATTTGGTGACCCCAA
CTTCGTTCCCGATGGAAATGAGAGAGGCGCCTTTTCCCCGCAGTTTAAAC
TTCAATCCACTGGTAGAATGTGGGCGTGCGCAACCACAATGACCCCAACC
CCTACCACAACAATATCAATCGACAACACTGTCAGTGGCCAGAACGCGGG
CTCTGCAGTAACCTCAGAGCAATGTCTGCGAGATAAGACTTGTCTCCCCA
TCGGTGGACATTCTTTGTGGTCTGCACTGGGTCGAGTCAACTCCAGAGTT
CCTGCAGCGCAGCGCAAGTATTTGTTTATCACAGCTCCAATGGACTCTTT
TGCGTTTTTCCCGGAGTTTGGAATGGGTGCCGGAGCCGAAATAGCCTCAT
TGGCTGTATTGATGGCTGTTGCAGATCGGGTGGCTATTTACTGGCGTGAA
CAACACGATGAGGGCGATTTTGAACGCCAACCGGTCTACTTTGCGCTAAA
TGCACAATCATGGGGGTACGCGGGCTCCTCAAGGTTTTTGCGAGATATGC
TAGAGTTTGAGTGTACGAATGAAGCCGATTTTGCCAAAGGTGAAAGAGGA
TGCACCGAGCCTTCCATTGACAATCTCAAGTTCAAGGATTTTAAAGACGC
TGATATTCAAGTTCTCAATCTCGGTCAATTGATAACGCCTGCCACAACTA
TGGATGGCCCCTCGGATCCACAGTTCTTCATTCATCATGAGGACGGGACA
AGTAATACGCTCGGAGATGAGTTCAAGAAGTCTTTTGGTCAATTTGACCT
TAACCTCGAGCGCGGCGGATTTGATTATGAGTCCAACGTACCACTGACTC
CAATTGATGCTACCCAAAGTTTCAAGTTCTTCAATGGAAGCAAGGACATG
GATGTTGTGAGTATCAGCAATTATGCTGTCAATTTTAGCACGGAAATCTA
TCATTCATCGTTGGACACCGAACTTCGAATAAGTCACGATGGCCAGCGAA
TACCAATGTACAGGGCTGCACATGCCATCGCATCAGCTGTGATTGGCATT
GCGTTTGGAGTAGAGGGACGGTGGGAAGTCAACACGACCATTGTTGACAA
CGTCATTACGTGCATGACAGGGAATTGGACCGACTGCTCTATGGCGCAGG
ACTACCTGGGGAAGGAGTCTGAAAACGCGACGGTTCAGCCTGGAAACTAT
CCTGGTCCTTTCTTTCCGATCAGCGTGCTTAAGGATCACAAACCCAGCGG
TGCTGCCAAGTTGGCGCTGATTCGAGCATTTTTCGCTCACCACGATAGAT
TTAATGAAAGCACAGTGACTTGTGAAAGTGAAAATGATTGTGCCGTATAC
AATCGGGACATTAATGAAAAAGCATCTCCGAAGAGCCAATCTGAACTCTT
TGATGCGCAATGCACTCGCGGGCGGTGCGTTGTCTCAGATACTCACACAC
ATAGAGCCTTCGGAGGCGGAATCAATATGATTGACAAGAAGGGAGGTTTT
GAGCTCGAAAGCAAGTACGAGAGAGAAAGTTTTGATGGAAATCTCCCACG
GCAGGGTGACTGGACGGAAAGCTTTTGGGATCCTGATACTGGATTTTGTG
AGCAAGTCCAAGATAGTCTCGCTTACGAGGCTGTTATATTTGGTGTCGGA
TTATGTGTTCTTGTTTTGAGCTTTGGTTTTGGCATCTGGCTCGACTACGC
CTTATTTGAGGACAAAGTCTTAGATGCAGAAGATGAATCAAGTATTTCAA
ACATGGGAGATTCCCTTGTACCATTTGTCTAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4684729..4687110-

>Gvermi12425.t2 ID=Gvermi12425.t2|Name=Gvermi12425.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2382bp|location=Sequence derived from alignment at ScGOVlb_3404:4684729..4687110- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAGCCTACCCTGCGCCTGTTGGCGTCTTCCGCCATTGCCTTGTATCT
CGCGCTCCTCCTCGCCGCCTTCCCCATCGCCACCGCACTCTCGCTCCCAA
AGCTCGGGCGCTTCCGTCGCAAGTGCTACACAAGCCTGCCCATGTGCATC
ATGCAGAGCAATAACGTTTCTTCGCGCGGCTGCGGTCAGTGCGACACAGA
CGTGCGCGAGGCTCCGCTGCGCGAGGTGCGAACCGAGTCAGAGCTCACCC
AGGTCAGGCTGCAGGGAGGCCGAGCCATAATTCTCATTCCCGAGCGCGTC
TTCTTTTCGAAGAAAGTCAGGTCAAGCATTAGTTTCTGGACCAACATTGA
CGCTCTCATTGTGTACGGGGGGCCTCCTAAACGCCCGAACGAATTCGTTG
ACAATGGCGCCGCCAACCAAACAATAGATCTACTCTTCAACTATTCGCTT
GATGAAACTGAACCCAACCGCCTGTACAACTTCTACCCGGATGGCGTCGG
CTCGGACAACCGTTGCGACGGCAACATTCCACGTCGCAACAACCCGGGCG
ATTGCACCTTTCAGCAGTTCATTCCTTTCAACATTTTTTATATCAATGCT
TCGCTGTCCGACCAAATTCTCCGTTCAGCTGCGCGATTTGGTGACCCCAA
CTTCGTTCCCGATGGAAATGAGAGAGGCGCCTTTTCCCCGCAGTTTAAAC
TTCAATCCACTGGTAGAATGTGGGCGTGCGCAACCACAATGACCCCAACC
CCTACCACAACAATATCAATCGACAACACTGTCAGTGGCCAGAACGCGGG
CTCTGCAGTAACCTCAGAGCAATGTCTGCGAGATAAGACTTGTCTCCCCA
TCGGTGGACATTCTTTGTGGTCTGCACTGGGTCGAGTCAACTCCAGAGTT
CCTGCAGCGCAGCGCAAGTATTTGTTTATCACAGCTCCAATGGACTCTTT
TGCGTTTTTCCCGGAGTTTGGAATGGGTGCCGGAGCCGAAATAGCCTCAT
TGGCTGTATTGATGGCTGTTGCAGATCGGGTGGCTATTTACTGGCGTGAA
CAACACGATGAGGGCGATTTTGAACGCCAACCGGTCTACTTTGCGCTAAA
TGCACAATCATGGGGGTACGCGGGCTCCTCAAGGTTTTTGCGAGATATGC
TAGAGTTTGAGTGTACGAATGAAGCCGATTTTGCCAAAGGTGAAAGAGGA
TGCACCGAGCCTTCCATTGACAATCTCAAGTTCAAGGATTTTAAAGACGC
TGATATTCAAGTTCTCAATCTCGGTCAATTGATAACGCCTGCCACAACTA
TGGATGGCCCCTCGGATCCACAGTTCTTCATTCATCATGAGGACGGGACA
AGTAATACGCTCGGAGATGAGTTCAAGAAGTCTTTTGGTCAATTTGACCT
TAACCTCGAGCGCGGCGGATTTGATTATGAGTCCAACGTACCACTGACTC
CAATTGATGCTACCCAAAGTTTCAAGTTCTTCAATGGAAGCAAGGACATG
GATGTTGTGAGTATCAGCAATTATGCTGTCAATTTTAGCACGGAAATCTA
TCATTCATCGTTGGACACCGAACTTCGAATAAGTCACGATGGCCAGCGAA
TACCAATGTACAGGGCTGCACATGCCATCGCATCAGCTGTGATTGGCATT
GCGTTTGGAGTAGAGGGACGGTGGGAAGTCAACACGACCATTGTTGACAA
CGTCATTACGTGCATGACAGGGAATTGGACCGACTGCTCTATGGCGCAGG
ACTACCTGGGGAAGGAGTCTGAAAACGCGACGGTTCAGCCTGGAAACTAT
CCTGGTCCTTTCTTTCCGATCAGCGTGCTTAAGGATCACAAACCCAGCGG
TGCTGCCAAGTTGGCGCTGATTCGAGCATTTTTCGCTCACCACGATAGAT
TTAATGAAAGCACAGTGACTTGTGAAAGTGAAAATGATTGTGCCGTATAC
AATCGGGACATTAATGAAAAAGCATCTCCGAAGAGCCAATCTGAACTCTT
TGATGCGCAATGCACTCGCGGGCGGTGCGTTGTCTCAGATACTCACACAC
ATAGAGCCTTCGGAGGCGGAATCAATATGATTGACAAGAAGGGAGGTTTT
GAGCTCGAAAGCAAGTACGAGAGAGAAAGTTTTGATGGAAATCTCCCACG
GCAGGGTGACTGGACGGAAAGCTTTTGGGATCCTGATACTGGATTTTGTG
AGCAAGTCCAAGATAGTCTCGCTTACGAGGCTGTTATATTTGGTGTCGGA
TTATGTGTTCTTGTTTTGAGCTTTGGTTTTGGCATCTGGCTCGACTACGC
CTTATTTGAGGACAAAGTCTTAGATGCAGAAGATGAATCAAGTATTTCAA
ACATGGGAGATTCCCTTGTACCATTTGTCTAG
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