Gvermi12424.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12424.t1
Unique NameGvermi12424.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length429
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4681699..4683076 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4792.ETI42031
PFAMsRPAP1_C,RPAP1_N
Max annot lvl4776|Peronosporales
KEGG koko:K20826
Evalue2.02e-15
EggNOG OGsKOG4732@1|root,KOG4732@2759|Eukaryota,3Q7EV@4776|Peronosporales
DescriptionRPAP1-like, N-terminal
COG categoryS
BRITEko00000,ko03021
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12424Gvermi12424Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4681699..4684695 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12424.t1Gvermi12424.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4681699..4683076 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12424.t1.start1Gvermi12424.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4681699..4681701 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12424.t1.CDS1Gvermi12424.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4681699..4682964 +
Gvermi12424.t1.CDS2Gvermi12424.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4683056..4683076 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12424.t1.exon1Gvermi12424.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4681699..4682964 +
Gvermi12424.t1.exon2Gvermi12424.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4683056..4683076 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12424.t1.intron1Gvermi12424.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 4682965..4683055 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12424.t1.stop1Gvermi12424.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4683074..4683076 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12424.t1 ID=Gvermi12424.t1|Name=Gvermi12424.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=429bp
MSPQQILQAQREIFATLNPDSISFLKQRSFQTANQHAKQAHQAPSESARS
AGTDQHPPLFSVSEGTNLGVAETKQQHEQLERAKRLWMTDATESIPTQEH
VDHILQKAVQDMGPIAKERFDLTGNILTAQEVQVLPTHKGLHHHGTFPES
AGYTLADLLILTRSTILSQRVMALKVLTSLIINHGPRVTEPMLKSDGIKL
AFSPLPATDTFHSALTNQVAYLEAVECLLQKSCVLDQRELIRDMYFASAF
YSPPFVRENDCSLLSVLSELHVITTLIEIAKARCTAVSTVEISKRALNAV
RMIVNNSPSLPESYVLEQHSSKPSRVLDMLMQQAVGTDRLAPSTTMLACD
IIANIFVKATWVDKDKDHGLQRLSLLEDFLLETAAHLNWAMRDTPFQLNP
IMQEAAKGVLRLFRAYLSQNLGKHMFTV*
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spliced messenger RNA

>Gvermi12424.t1 ID=Gvermi12424.t1|Name=Gvermi12424.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1287bp|location=Sequence derived from alignment at ScGOVlb_3404:4681699..4683076+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTCCACAGCAGATACTACAAGCACAACGCGAGATTTTTGCCACGCT
CAATCCAGACAGCATCTCCTTTCTAAAGCAACGTTCTTTCCAAACCGCAA
ACCAGCATGCGAAGCAAGCCCATCAAGCACCCTCGGAATCAGCACGCTCG
GCCGGCACTGATCAACATCCTCCTCTTTTCTCCGTTAGCGAAGGAACTAA
CCTCGGTGTCGCCGAAACGAAACAACAACACGAACAACTAGAGCGCGCGA
AGCGCTTATGGATGACCGATGCCACTGAATCGATACCAACACAAGAGCAC
GTGGATCACATTTTGCAAAAAGCTGTTCAAGATATGGGGCCCATTGCCAA
GGAACGCTTCGATCTAACCGGTAACATTTTAACTGCACAAGAAGTCCAAG
TGCTCCCAACTCACAAAGGACTTCATCATCACGGCACTTTCCCTGAGAGT
GCTGGCTACACACTGGCCGACTTGTTGATTTTGACTCGATCCACTATTCT
TTCGCAGCGAGTTATGGCTCTCAAGGTGCTCACAAGCTTGATCATTAACC
ACGGGCCGCGTGTCACCGAGCCCATGCTTAAGTCGGATGGCATCAAACTC
GCGTTTTCTCCGCTCCCGGCCACCGACACTTTTCATTCGGCTCTTACCAA
CCAAGTTGCATATCTCGAAGCCGTAGAATGCTTGCTGCAAAAGTCCTGCG
TCTTAGATCAACGTGAGCTTATTCGCGACATGTACTTTGCCTCAGCGTTC
TACTCACCACCTTTTGTGCGAGAGAATGACTGTTCTTTACTAAGTGTCTT
GAGTGAGTTACACGTTATCACGACACTCATCGAAATCGCCAAAGCACGAT
GCACCGCGGTGAGCACTGTAGAGATTTCGAAGCGAGCTTTAAACGCTGTT
CGGATGATCGTCAATAACTCTCCAAGTCTACCAGAGAGCTATGTTTTGGA
ACAGCACTCTTCAAAGCCTTCTCGTGTACTCGACATGTTGATGCAACAGG
CTGTTGGGACTGACAGACTAGCCCCTTCGACCACAATGTTGGCATGCGAC
ATTATCGCCAACATATTTGTAAAAGCTACGTGGGTTGATAAGGATAAAGA
CCATGGCCTTCAAAGGCTCTCTCTTTTGGAGGATTTTCTATTGGAAACTG
CTGCTCACTTGAATTGGGCCATGAGAGACACTCCTTTCCAGCTCAATCCA
ATCATGCAAGAAGCAGCGAAGGGCGTCCTTCGGTTGTTTCGAGCGTACCT
CTCGCAGAACCTCGGTAAGCATATGTTCACTGTCTAG
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protein sequence of Gvermi12424.t1

>Gvermi12424.t1 ID=Gvermi12424.t1|Name=Gvermi12424.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=429bp
MSPQQILQAQREIFATLNPDSISFLKQRSFQTANQHAKQAHQAPSESARS
AGTDQHPPLFSVSEGTNLGVAETKQQHEQLERAKRLWMTDATESIPTQEH
VDHILQKAVQDMGPIAKERFDLTGNILTAQEVQVLPTHKGLHHHGTFPES
AGYTLADLLILTRSTILSQRVMALKVLTSLIINHGPRVTEPMLKSDGIKL
AFSPLPATDTFHSALTNQVAYLEAVECLLQKSCVLDQRELIRDMYFASAF
YSPPFVRENDCSLLSVLSELHVITTLIEIAKARCTAVSTVEISKRALNAV
RMIVNNSPSLPESYVLEQHSSKPSRVLDMLMQQAVGTDRLAPSTTMLACD
IIANIFVKATWVDKDKDHGLQRLSLLEDFLLETAAHLNWAMRDTPFQLNP
IMQEAAKGVLRLFRAYLSQNLGKHMFTV*
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mRNA from alignment at ScGOVlb_3404:4681699..4683076+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12424.t1 ID=Gvermi12424.t1|Name=Gvermi12424.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1378bp|location=Sequence derived from alignment at ScGOVlb_3404:4681699..4683076+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTCCACAGCAGATACTACAAGCACAACGCGAGATTTTTGCCACGCT
CAATCCAGACAGCATCTCCTTTCTAAAGCAACGTTCTTTCCAAACCGCAA
ACCAGCATGCGAAGCAAGCCCATCAAGCACCCTCGGAATCAGCACGCTCG
GCCGGCACTGATCAACATCCTCCTCTTTTCTCCGTTAGCGAAGGAACTAA
CCTCGGTGTCGCCGAAACGAAACAACAACACGAACAACTAGAGCGCGCGA
AGCGCTTATGGATGACCGATGCCACTGAATCGATACCAACACAAGAGCAC
GTGGATCACATTTTGCAAAAAGCTGTTCAAGATATGGGGCCCATTGCCAA
GGAACGCTTCGATCTAACCGGTAACATTTTAACTGCACAAGAAGTCCAAG
TGCTCCCAACTCACAAAGGACTTCATCATCACGGCACTTTCCCTGAGAGT
GCTGGCTACACACTGGCCGACTTGTTGATTTTGACTCGATCCACTATTCT
TTCGCAGCGAGTTATGGCTCTCAAGGTGCTCACAAGCTTGATCATTAACC
ACGGGCCGCGTGTCACCGAGCCCATGCTTAAGTCGGATGGCATCAAACTC
GCGTTTTCTCCGCTCCCGGCCACCGACACTTTTCATTCGGCTCTTACCAA
CCAAGTTGCATATCTCGAAGCCGTAGAATGCTTGCTGCAAAAGTCCTGCG
TCTTAGATCAACGTGAGCTTATTCGCGACATGTACTTTGCCTCAGCGTTC
TACTCACCACCTTTTGTGCGAGAGAATGACTGTTCTTTACTAAGTGTCTT
GAGTGAGTTACACGTTATCACGACACTCATCGAAATCGCCAAAGCACGAT
GCACCGCGGTGAGCACTGTAGAGATTTCGAAGCGAGCTTTAAACGCTGTT
CGGATGATCGTCAATAACTCTCCAAGTCTACCAGAGAGCTATGTTTTGGA
ACAGCACTCTTCAAAGCCTTCTCGTGTACTCGACATGTTGATGCAACAGG
CTGTTGGGACTGACAGACTAGCCCCTTCGACCACAATGTTGGCATGCGAC
ATTATCGCCAACATATTTGTAAAAGCTACGTGGGTTGATAAGGATAAAGA
CCATGGCCTTCAAAGGCTCTCTCTTTTGGAGGATTTTCTATTGGAAACTG
CTGCTCACTTGAATTGGGCCATGAGAGACACTCCTTTCCAGCTCAATCCA
ATCATGCAAGAAGCAGCGAAGGGCGTCCTTCGGTTGTTTCGAGCGTACCT
CTCGCAGAACCTCGGTGTTCAAGCCATATCAGCTTTTCTTCCAGCCATCT
GTCGCCTAGCACATGAAGTAGACGACAACCTGGCAGTCGAGGCCTATCTC
GCGTTAGAAGCATATGTTCACTGTCTAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4681699..4683076+

>Gvermi12424.t1 ID=Gvermi12424.t1|Name=Gvermi12424.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1287bp|location=Sequence derived from alignment at ScGOVlb_3404:4681699..4683076+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTCCACAGCAGATACTACAAGCACAACGCGAGATTTTTGCCACGCT
CAATCCAGACAGCATCTCCTTTCTAAAGCAACGTTCTTTCCAAACCGCAA
ACCAGCATGCGAAGCAAGCCCATCAAGCACCCTCGGAATCAGCACGCTCG
GCCGGCACTGATCAACATCCTCCTCTTTTCTCCGTTAGCGAAGGAACTAA
CCTCGGTGTCGCCGAAACGAAACAACAACACGAACAACTAGAGCGCGCGA
AGCGCTTATGGATGACCGATGCCACTGAATCGATACCAACACAAGAGCAC
GTGGATCACATTTTGCAAAAAGCTGTTCAAGATATGGGGCCCATTGCCAA
GGAACGCTTCGATCTAACCGGTAACATTTTAACTGCACAAGAAGTCCAAG
TGCTCCCAACTCACAAAGGACTTCATCATCACGGCACTTTCCCTGAGAGT
GCTGGCTACACACTGGCCGACTTGTTGATTTTGACTCGATCCACTATTCT
TTCGCAGCGAGTTATGGCTCTCAAGGTGCTCACAAGCTTGATCATTAACC
ACGGGCCGCGTGTCACCGAGCCCATGCTTAAGTCGGATGGCATCAAACTC
GCGTTTTCTCCGCTCCCGGCCACCGACACTTTTCATTCGGCTCTTACCAA
CCAAGTTGCATATCTCGAAGCCGTAGAATGCTTGCTGCAAAAGTCCTGCG
TCTTAGATCAACGTGAGCTTATTCGCGACATGTACTTTGCCTCAGCGTTC
TACTCACCACCTTTTGTGCGAGAGAATGACTGTTCTTTACTAAGTGTCTT
GAGTGAGTTACACGTTATCACGACACTCATCGAAATCGCCAAAGCACGAT
GCACCGCGGTGAGCACTGTAGAGATTTCGAAGCGAGCTTTAAACGCTGTT
CGGATGATCGTCAATAACTCTCCAAGTCTACCAGAGAGCTATGTTTTGGA
ACAGCACTCTTCAAAGCCTTCTCGTGTACTCGACATGTTGATGCAACAGG
CTGTTGGGACTGACAGACTAGCCCCTTCGACCACAATGTTGGCATGCGAC
ATTATCGCCAACATATTTGTAAAAGCTACGTGGGTTGATAAGGATAAAGA
CCATGGCCTTCAAAGGCTCTCTCTTTTGGAGGATTTTCTATTGGAAACTG
CTGCTCACTTGAATTGGGCCATGAGAGACACTCCTTTCCAGCTCAATCCA
ATCATGCAAGAAGCAGCGAAGGGCGTCCTTCGGTTGTTTCGAGCGTACCT
CTCGCAGAACCTCGGTAAGCATATGTTCACTGTCTAG
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