Gvermi12423.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12423.t1
Unique NameGvermi12423.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length369
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4679443..4680549 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12423Gvermi12423Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4679443..4680549 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12423.t1.stop1Gvermi12423.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4679443..4679445 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12423.t1.CDS1Gvermi12423.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4679443..4680549 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12423.t1.exon1Gvermi12423.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4679443..4680549 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12423.t1.start1Gvermi12423.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4680547..4680549 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12423.t1Gvermi12423.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4679443..4680549 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12423.t1 ID=Gvermi12423.t1|Name=Gvermi12423.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=369bp
MDEQVVPTFNAAAPAAVPAAIRKIKGKGLRRCHTAKSELSSLARHKSAPA
PEQKPALAAVPALTDSPSVPSVDPVFVSPAAEYPGKRRWQTPLRAGEWPE
NWEGARELGLPVCVRSAQAPAVTKVLRATVADAVVAYVGPHLPRHTVEKW
LCLLFEYLELDADEQVLVVCLLRRYVSHGGRFVGLGDWARPQRWECVVAV
ASYFAVLLSEEFPGRAAMDLRELLGPNFRFGSEQISFLKVVDWRISIEAD
EFKQIKELSQKIFEKDPAAKQTMNDCFQMDKASAEAKRRIAEEAEASAAA
AAKAAMVHAPPATVGKKRGYAAIVPVDDSVVPRVVIPRLDAAHAHALSAV
PGAPTAFIPTISHWIPHW*
back to top

spliced messenger RNA

>Gvermi12423.t1 ID=Gvermi12423.t1|Name=Gvermi12423.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1107bp|location=Sequence derived from alignment at ScGOVlb_3404:4679443..4680549- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGAGCAAGTCGTGCCGACTTTCAACGCCGCCGCCCCCGCTGCCGT
CCCCGCCGCCATCCGCAAGATTAAAGGCAAGGGGCTGCGACGCTGTCACA
CCGCCAAGTCCGAGCTGTCGTCCCTGGCGCGTCACAAGTCCGCCCCTGCC
CCGGAGCAGAAGCCGGCTTTAGCCGCCGTCCCTGCCCTCACCGACTCTCC
GTCTGTGCCCTCTGTCGACCCTGTCTTCGTGTCGCCCGCCGCCGAATACC
CCGGTAAGCGTCGCTGGCAAACTCCTCTCCGTGCCGGCGAATGGCCCGAG
AACTGGGAGGGCGCCCGTGAGCTCGGCCTGCCCGTTTGTGTTCGCTCTGC
GCAGGCGCCGGCCGTCACCAAGGTTCTCCGTGCCACCGTGGCGGACGCCG
TCGTGGCCTACGTTGGTCCGCATCTGCCGCGGCACACCGTCGAGAAGTGG
CTCTGTCTTCTCTTCGAGTACCTGGAGCTTGACGCCGACGAGCAGGTACT
CGTCGTGTGTTTACTTCGCCGCTACGTGAGCCACGGCGGCCGTTTCGTCG
GCCTCGGTGACTGGGCCCGTCCGCAACGCTGGGAGTGTGTCGTGGCTGTT
GCCAGCTACTTTGCCGTGCTTCTCAGCGAAGAGTTCCCCGGCCGCGCTGC
CATGGATCTTCGCGAGCTGCTCGGCCCCAACTTCCGATTCGGGTCTGAGC
AGATTTCATTCCTCAAGGTCGTAGACTGGCGCATATCCATCGAGGCCGAT
GAGTTCAAGCAAATTAAGGAGCTCTCACAAAAGATATTCGAGAAAGACCC
AGCCGCGAAGCAAACCATGAACGACTGCTTCCAGATGGACAAAGCGTCGG
CCGAGGCCAAGCGTCGCATTGCGGAGGAGGCGGAAGCATCTGCCGCCGCC
GCTGCCAAGGCAGCTATGGTCCATGCCCCGCCCGCCACTGTGGGCAAGAA
GCGCGGATATGCCGCCATTGTGCCTGTCGATGATTCTGTTGTTCCTCGTG
TTGTTATCCCACGTCTGGATGCTGCCCATGCCCATGCTCTTTCTGCTGTT
CCAGGTGCTCCCACTGCCTTTATTCCTACCATTTCGCACTGGATACCGCA
TTGGTAG
back to top

protein sequence of Gvermi12423.t1

>Gvermi12423.t1 ID=Gvermi12423.t1|Name=Gvermi12423.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=369bp
MDEQVVPTFNAAAPAAVPAAIRKIKGKGLRRCHTAKSELSSLARHKSAPA
PEQKPALAAVPALTDSPSVPSVDPVFVSPAAEYPGKRRWQTPLRAGEWPE
NWEGARELGLPVCVRSAQAPAVTKVLRATVADAVVAYVGPHLPRHTVEKW
LCLLFEYLELDADEQVLVVCLLRRYVSHGGRFVGLGDWARPQRWECVVAV
ASYFAVLLSEEFPGRAAMDLRELLGPNFRFGSEQISFLKVVDWRISIEAD
EFKQIKELSQKIFEKDPAAKQTMNDCFQMDKASAEAKRRIAEEAEASAAA
AAKAAMVHAPPATVGKKRGYAAIVPVDDSVVPRVVIPRLDAAHAHALSAV
PGAPTAFIPTISHWIPHW*
back to top

mRNA from alignment at ScGOVlb_3404:4679443..4680549-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12423.t1 ID=Gvermi12423.t1|Name=Gvermi12423.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1107bp|location=Sequence derived from alignment at ScGOVlb_3404:4679443..4680549- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACGAGCAAGTCGTGCCGACTTTCAACGCCGCCGCCCCCGCTGCCGT
CCCCGCCGCCATCCGCAAGATTAAAGGCAAGGGGCTGCGACGCTGTCACA
CCGCCAAGTCCGAGCTGTCGTCCCTGGCGCGTCACAAGTCCGCCCCTGCC
CCGGAGCAGAAGCCGGCTTTAGCCGCCGTCCCTGCCCTCACCGACTCTCC
GTCTGTGCCCTCTGTCGACCCTGTCTTCGTGTCGCCCGCCGCCGAATACC
CCGGTAAGCGTCGCTGGCAAACTCCTCTCCGTGCCGGCGAATGGCCCGAG
AACTGGGAGGGCGCCCGTGAGCTCGGCCTGCCCGTTTGTGTTCGCTCTGC
GCAGGCGCCGGCCGTCACCAAGGTTCTCCGTGCCACCGTGGCGGACGCCG
TCGTGGCCTACGTTGGTCCGCATCTGCCGCGGCACACCGTCGAGAAGTGG
CTCTGTCTTCTCTTCGAGTACCTGGAGCTTGACGCCGACGAGCAGGTACT
CGTCGTGTGTTTACTTCGCCGCTACGTGAGCCACGGCGGCCGTTTCGTCG
GCCTCGGTGACTGGGCCCGTCCGCAACGCTGGGAGTGTGTCGTGGCTGTT
GCCAGCTACTTTGCCGTGCTTCTCAGCGAAGAGTTCCCCGGCCGCGCTGC
CATGGATCTTCGCGAGCTGCTCGGCCCCAACTTCCGATTCGGGTCTGAGC
AGATTTCATTCCTCAAGGTCGTAGACTGGCGCATATCCATCGAGGCCGAT
GAGTTCAAGCAAATTAAGGAGCTCTCACAAAAGATATTCGAGAAAGACCC
AGCCGCGAAGCAAACCATGAACGACTGCTTCCAGATGGACAAAGCGTCGG
CCGAGGCCAAGCGTCGCATTGCGGAGGAGGCGGAAGCATCTGCCGCCGCC
GCTGCCAAGGCAGCTATGGTCCATGCCCCGCCCGCCACTGTGGGCAAGAA
GCGCGGATATGCCGCCATTGTGCCTGTCGATGATTCTGTTGTTCCTCGTG
TTGTTATCCCACGTCTGGATGCTGCCCATGCCCATGCTCTTTCTGCTGTT
CCAGGTGCTCCCACTGCCTTTATTCCTACCATTTCGCACTGGATACCGCA
TTGGTAG
back to top

Coding sequence (CDS) from alignment at ScGOVlb_3404:4679443..4680549-

>Gvermi12423.t1 ID=Gvermi12423.t1|Name=Gvermi12423.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1107bp|location=Sequence derived from alignment at ScGOVlb_3404:4679443..4680549- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACGAGCAAGTCGTGCCGACTTTCAACGCCGCCGCCCCCGCTGCCGT
CCCCGCCGCCATCCGCAAGATTAAAGGCAAGGGGCTGCGACGCTGTCACA
CCGCCAAGTCCGAGCTGTCGTCCCTGGCGCGTCACAAGTCCGCCCCTGCC
CCGGAGCAGAAGCCGGCTTTAGCCGCCGTCCCTGCCCTCACCGACTCTCC
GTCTGTGCCCTCTGTCGACCCTGTCTTCGTGTCGCCCGCCGCCGAATACC
CCGGTAAGCGTCGCTGGCAAACTCCTCTCCGTGCCGGCGAATGGCCCGAG
AACTGGGAGGGCGCCCGTGAGCTCGGCCTGCCCGTTTGTGTTCGCTCTGC
GCAGGCGCCGGCCGTCACCAAGGTTCTCCGTGCCACCGTGGCGGACGCCG
TCGTGGCCTACGTTGGTCCGCATCTGCCGCGGCACACCGTCGAGAAGTGG
CTCTGTCTTCTCTTCGAGTACCTGGAGCTTGACGCCGACGAGCAGGTACT
CGTCGTGTGTTTACTTCGCCGCTACGTGAGCCACGGCGGCCGTTTCGTCG
GCCTCGGTGACTGGGCCCGTCCGCAACGCTGGGAGTGTGTCGTGGCTGTT
GCCAGCTACTTTGCCGTGCTTCTCAGCGAAGAGTTCCCCGGCCGCGCTGC
CATGGATCTTCGCGAGCTGCTCGGCCCCAACTTCCGATTCGGGTCTGAGC
AGATTTCATTCCTCAAGGTCGTAGACTGGCGCATATCCATCGAGGCCGAT
GAGTTCAAGCAAATTAAGGAGCTCTCACAAAAGATATTCGAGAAAGACCC
AGCCGCGAAGCAAACCATGAACGACTGCTTCCAGATGGACAAAGCGTCGG
CCGAGGCCAAGCGTCGCATTGCGGAGGAGGCGGAAGCATCTGCCGCCGCC
GCTGCCAAGGCAGCTATGGTCCATGCCCCGCCCGCCACTGTGGGCAAGAA
GCGCGGATATGCCGCCATTGTGCCTGTCGATGATTCTGTTGTTCCTCGTG
TTGTTATCCCACGTCTGGATGCTGCCCATGCCCATGCTCTTTCTGCTGTT
CCAGGTGCTCCCACTGCCTTTATTCCTACCATTTCGCACTGGATACCGCA
TTGGTAG
back to top