Gvermi12418.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12418.t1
Unique NameGvermi12418.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length456
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4652580..4654062 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12418Gvermi12418Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4652580..4654062 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12418.t1Gvermi12418.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4652580..4654062 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12418.t1.stop1Gvermi12418.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4652580..4652582 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12418.t1.CDS1Gvermi12418.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4652580..4653575 -
Gvermi12418.t1.CDS2Gvermi12418.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4653691..4654062 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12418.t1.exon1Gvermi12418.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4652580..4653575 -
Gvermi12418.t1.exon2Gvermi12418.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4653691..4654062 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12418.t1.intron1Gvermi12418.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 4653576..4653690 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12418.t1.start1Gvermi12418.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4654060..4654062 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12418.t1 ID=Gvermi12418.t1|Name=Gvermi12418.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=456bp
MSANHILQDLLTEKMVTPRLVADCDEQQLLLIFPLVLHSVQSHVPTDASP
LLRPLLMRLCSSRRLKLRFLLLRKHPAFLKLQLRISFVSRGYNQWCFARG
SSASQSSCLAHKRSRDIMRVPVDMVDLQSEDFFRHVIFEQPRKDKYDFGF
QLISHPFRAPTLPQEHSFNGPDEEGSLHFSSQSDNIEDYYPDHQLAESAT
VRVEMDQTAIELRHLSFEEDIVHFANMRPLFPRLIIRTGTNMLKVQLCQM
MLVFFNCVWSVPSLTCPDVQAAPICVTLDVIASGMEHGIIRAFCHTQSFS
RFCFDFWQDTRGRDPSVADQFIRSAAGAFTAAYICGINTLQKDTFCVKDG
AALYLHAFEDVFQGPAQPKVGIPKVMKRCLKDIGIWDNFHACCLRGFHSL
RERYEEIFHILSPLFSALCKMDEESISSHLSSKYCFNMKVANARKAAKVF
RKWLG*
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spliced messenger RNA

>Gvermi12418.t1 ID=Gvermi12418.t1|Name=Gvermi12418.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1368bp|location=Sequence derived from alignment at ScGOVlb_3404:4652580..4654062- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGCAAACCACATACTTCAAGACCTCTTGACTGAAAAGATGGTAAC
TCCTCGCCTTGTTGCCGACTGCGACGAACAGCAGCTGTTGCTCATATTTC
CCCTTGTTTTACATTCTGTTCAAAGTCATGTGCCCACGGACGCTTCCCCA
CTCTTGCGGCCGTTGTTGATGCGTTTGTGTTCTTCGAGAAGGCTTAAACT
GCGCTTTTTGTTGCTCAGAAAGCACCCCGCGTTTCTTAAGTTGCAACTAA
GGATTTCATTTGTGTCCCGCGGATACAATCAGTGGTGTTTTGCGCGTGGT
TCCTCTGCCTCGCAGTCCAGCTGCTTGGCTCACAAGCGAAGTAGAGATAT
CATGCGTGTGCCAGTAGATATGGTTGATCTCCAGAGTGAAGATTTTTTTC
GACATGTCATATTCGAACAACCGCGGAAAGACAAGTATGACTTTGGTTTT
CAGCTAATATCTCATCCATTTCGGGCACCCACTTTGCCTCAAGAACATTC
TTTCAACGGTCCCGATGAGGAAGGATCCTTACACTTTTCGTCACAGTCCG
ACAATATAGAGGACTACTATCCTGACCATCAGCTTGCGGAATCAGCAACC
GTGCGCGTAGAGATGGATCAAACAGCCATTGAGCTTCGACATCTATCATT
CGAGGAGGACATTGTGCATTTTGCGAACATGAGACCACTATTCCCACGTC
TCATCATTCGCACTGGAACAAATATGCTCAAAGTACAGCTTTGTCAAATG
ATGTTGGTCTTTTTCAACTGCGTTTGGTCCGTTCCGAGTTTAACGTGTCC
CGATGTGCAGGCAGCACCAATATGCGTCACTTTGGATGTCATTGCCTCCG
GAATGGAGCATGGGATAATACGGGCATTCTGCCATACACAGAGTTTCTCT
AGATTTTGTTTCGACTTCTGGCAGGACACTCGCGGGAGGGACCCCTCTGT
AGCAGATCAATTTATTCGAAGCGCCGCCGGGGCCTTCACAGCAGCGTATA
TATGCGGAATCAATACCCTGCAGAAAGACACGTTTTGTGTCAAAGACGGT
GCTGCGCTTTACTTACATGCTTTTGAAGATGTGTTCCAAGGTCCCGCGCA
ACCAAAGGTAGGAATTCCCAAGGTAATGAAGCGCTGTCTGAAGGACATAG
GAATCTGGGATAATTTCCATGCTTGTTGTCTGAGAGGGTTTCATAGCTTG
CGAGAAAGGTACGAAGAGATATTTCACATCCTTTCGCCATTGTTCTCGGC
TCTTTGCAAAATGGACGAGGAAAGCATCTCGAGTCATTTATCCTCTAAAT
ACTGCTTCAATATGAAAGTAGCGAACGCTCGCAAAGCAGCCAAAGTCTTT
CGAAAATGGCTTGGGTGA
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protein sequence of Gvermi12418.t1

>Gvermi12418.t1 ID=Gvermi12418.t1|Name=Gvermi12418.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=456bp
MSANHILQDLLTEKMVTPRLVADCDEQQLLLIFPLVLHSVQSHVPTDASP
LLRPLLMRLCSSRRLKLRFLLLRKHPAFLKLQLRISFVSRGYNQWCFARG
SSASQSSCLAHKRSRDIMRVPVDMVDLQSEDFFRHVIFEQPRKDKYDFGF
QLISHPFRAPTLPQEHSFNGPDEEGSLHFSSQSDNIEDYYPDHQLAESAT
VRVEMDQTAIELRHLSFEEDIVHFANMRPLFPRLIIRTGTNMLKVQLCQM
MLVFFNCVWSVPSLTCPDVQAAPICVTLDVIASGMEHGIIRAFCHTQSFS
RFCFDFWQDTRGRDPSVADQFIRSAAGAFTAAYICGINTLQKDTFCVKDG
AALYLHAFEDVFQGPAQPKVGIPKVMKRCLKDIGIWDNFHACCLRGFHSL
RERYEEIFHILSPLFSALCKMDEESISSHLSSKYCFNMKVANARKAAKVF
RKWLG*
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mRNA from alignment at ScGOVlb_3404:4652580..4654062-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12418.t1 ID=Gvermi12418.t1|Name=Gvermi12418.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1483bp|location=Sequence derived from alignment at ScGOVlb_3404:4652580..4654062- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCCGCAAACCACATACTTCAAGACCTCTTGACTGAAAAGATGGTAAC
TCCTCGCCTTGTTGCCGACTGCGACGAACAGCAGCTGTTGCTCATATTTC
CCCTTGTTTTACATTCTGTTCAAAGTCATGTGCCCACGGACGCTTCCCCA
CTCTTGCGGCCGTTGTTGATGCGTTTGTGTTCTTCGAGAAGGCTTAAACT
GCGCTTTTTGTTGCTCAGAAAGCACCCCGCGTTTCTTAAGTTGCAACTAA
GGATTTCATTTGTGTCCCGCGGATACAATCAGTGGTGTTTTGCGCGTGGT
TCCTCTGCCTCGCAGTCCAGCTGCTTGGCTCACAAGCGAAGTAGAGATAT
CATGCGTGTGCCAGTAGATATGGTATGTGCTCATACAGTATCCATATATG
CCCCTTTTTGCATAATACACATTGCTGCTCAGAAAAAGCGAGACTAACAC
AATCGTTGTGTGCCATGAGATGCTTTCCTTTGCGCAGGTTGATCTCCAGA
GTGAAGATTTTTTTCGACATGTCATATTCGAACAACCGCGGAAAGACAAG
TATGACTTTGGTTTTCAGCTAATATCTCATCCATTTCGGGCACCCACTTT
GCCTCAAGAACATTCTTTCAACGGTCCCGATGAGGAAGGATCCTTACACT
TTTCGTCACAGTCCGACAATATAGAGGACTACTATCCTGACCATCAGCTT
GCGGAATCAGCAACCGTGCGCGTAGAGATGGATCAAACAGCCATTGAGCT
TCGACATCTATCATTCGAGGAGGACATTGTGCATTTTGCGAACATGAGAC
CACTATTCCCACGTCTCATCATTCGCACTGGAACAAATATGCTCAAAGTA
CAGCTTTGTCAAATGATGTTGGTCTTTTTCAACTGCGTTTGGTCCGTTCC
GAGTTTAACGTGTCCCGATGTGCAGGCAGCACCAATATGCGTCACTTTGG
ATGTCATTGCCTCCGGAATGGAGCATGGGATAATACGGGCATTCTGCCAT
ACACAGAGTTTCTCTAGATTTTGTTTCGACTTCTGGCAGGACACTCGCGG
GAGGGACCCCTCTGTAGCAGATCAATTTATTCGAAGCGCCGCCGGGGCCT
TCACAGCAGCGTATATATGCGGAATCAATACCCTGCAGAAAGACACGTTT
TGTGTCAAAGACGGTGCTGCGCTTTACTTACATGCTTTTGAAGATGTGTT
CCAAGGTCCCGCGCAACCAAAGGTAGGAATTCCCAAGGTAATGAAGCGCT
GTCTGAAGGACATAGGAATCTGGGATAATTTCCATGCTTGTTGTCTGAGA
GGGTTTCATAGCTTGCGAGAAAGGTACGAAGAGATATTTCACATCCTTTC
GCCATTGTTCTCGGCTCTTTGCAAAATGGACGAGGAAAGCATCTCGAGTC
ATTTATCCTCTAAATACTGCTTCAATATGAAAGTAGCGAACGCTCGCAAA
GCAGCCAAAGTCTTTCGAAAATGGCTTGGGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4652580..4654062-

>Gvermi12418.t1 ID=Gvermi12418.t1|Name=Gvermi12418.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1368bp|location=Sequence derived from alignment at ScGOVlb_3404:4652580..4654062- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCCGCAAACCACATACTTCAAGACCTCTTGACTGAAAAGATGGTAAC
TCCTCGCCTTGTTGCCGACTGCGACGAACAGCAGCTGTTGCTCATATTTC
CCCTTGTTTTACATTCTGTTCAAAGTCATGTGCCCACGGACGCTTCCCCA
CTCTTGCGGCCGTTGTTGATGCGTTTGTGTTCTTCGAGAAGGCTTAAACT
GCGCTTTTTGTTGCTCAGAAAGCACCCCGCGTTTCTTAAGTTGCAACTAA
GGATTTCATTTGTGTCCCGCGGATACAATCAGTGGTGTTTTGCGCGTGGT
TCCTCTGCCTCGCAGTCCAGCTGCTTGGCTCACAAGCGAAGTAGAGATAT
CATGCGTGTGCCAGTAGATATGGTTGATCTCCAGAGTGAAGATTTTTTTC
GACATGTCATATTCGAACAACCGCGGAAAGACAAGTATGACTTTGGTTTT
CAGCTAATATCTCATCCATTTCGGGCACCCACTTTGCCTCAAGAACATTC
TTTCAACGGTCCCGATGAGGAAGGATCCTTACACTTTTCGTCACAGTCCG
ACAATATAGAGGACTACTATCCTGACCATCAGCTTGCGGAATCAGCAACC
GTGCGCGTAGAGATGGATCAAACAGCCATTGAGCTTCGACATCTATCATT
CGAGGAGGACATTGTGCATTTTGCGAACATGAGACCACTATTCCCACGTC
TCATCATTCGCACTGGAACAAATATGCTCAAAGTACAGCTTTGTCAAATG
ATGTTGGTCTTTTTCAACTGCGTTTGGTCCGTTCCGAGTTTAACGTGTCC
CGATGTGCAGGCAGCACCAATATGCGTCACTTTGGATGTCATTGCCTCCG
GAATGGAGCATGGGATAATACGGGCATTCTGCCATACACAGAGTTTCTCT
AGATTTTGTTTCGACTTCTGGCAGGACACTCGCGGGAGGGACCCCTCTGT
AGCAGATCAATTTATTCGAAGCGCCGCCGGGGCCTTCACAGCAGCGTATA
TATGCGGAATCAATACCCTGCAGAAAGACACGTTTTGTGTCAAAGACGGT
GCTGCGCTTTACTTACATGCTTTTGAAGATGTGTTCCAAGGTCCCGCGCA
ACCAAAGGTAGGAATTCCCAAGGTAATGAAGCGCTGTCTGAAGGACATAG
GAATCTGGGATAATTTCCATGCTTGTTGTCTGAGAGGGTTTCATAGCTTG
CGAGAAAGGTACGAAGAGATATTTCACATCCTTTCGCCATTGTTCTCGGC
TCTTTGCAAAATGGACGAGGAAAGCATCTCGAGTCATTTATCCTCTAAAT
ACTGCTTCAATATGAAAGTAGCGAACGCTCGCAAAGCAGCCAAAGTCTTT
CGAAAATGGCTTGGGTGA
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