Gvermi12417.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12417.t1
Unique NameGvermi12417.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length306
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4650677..4651804 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMT410CT
Preferred nameRPS0
PFAMs40S_SA_C,Ribosomal_S2
Max annot lvl2759|Eukaryota
KEGG rclassRC00367,RC00942
KEGG koko:K01205,ko:K01968,ko:K02998,ko:K04392,ko:K21848
KEGG TC9.A.19.1
KEGG ReactionR04138,R07816
KEGG Pathwayko00280,ko00531,ko01100,ko03010,ko04010,ko04013,ko04014,ko04015,ko04024,ko04062,ko04071,ko04142,ko04145,ko04151,ko04310,ko04360,ko04370,ko04380,ko04510,ko04520,ko04530,ko04620,ko04650,ko04662,ko04664,ko04666,ko04670,ko04722,ko04810,ko04932,ko04933,ko04972,ko05014,ko05100,ko05120,ko05131,ko05132,ko05167,ko05200,ko05203,ko05205,ko05210,ko05211,ko05212,ko05231,ko05416,ko05418,map00280,map00531,map01100,map03010,map04010,map04013,map04014,map04015,map04024,map04062,map04071,map04142,map04145,map04151,map04310,map04360,map04370,map04380,map04510,map04520,map04530,map04620,map04650,map04662,map04664,map04666,map04670,map04722,map04810,map04932,map04933,map04972,map05014,map05100,map05120,map05131,map05132,map05167,map05200,map05203,map05205,map05210,map05211,map05212,map05231,map05416,map05418
KEGG ModuleM00036,M00078,M00177
GOsGO:0000028,GO:0000184,GO:0000447,GO:0000460,GO:0000461,GO:0000462,GO:0000466,GO:0000469,GO:0000478,GO:0000479,GO:0000956,GO:0002181,GO:0003674,GO:0003735,GO:0005055,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005604,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005783,GO:0005789,GO:0005791,GO:0005829,GO:0005840,GO:0005886,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006407,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006611,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0007155,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009888,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010494,GO:0010605,GO:0010629,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0019538,GO:0022607,GO:0022610,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030154,GO:0030490,GO:0030684,GO:0030686,GO:0030855,GO:0030867,GO:0031012,GO:0031090,GO:0031123,GO:0031125,GO:0031503,GO:0031974,GO:0031981,GO:0031984,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034470,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0035770,GO:0036464,GO:0036477,GO:0042175,GO:0042254,GO:0042255,GO:0042274,GO:0042886,GO:0043021,GO:0043022,GO:0043025,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043236,GO:0043603,GO:0043604,GO:0043628,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044297,GO:0044391,GO:0044421,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044877,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048519,GO:0048856,GO:0048869,GO:0050657,GO:0050658,GO:0050789,GO:0050840,GO:0051029,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0060255,GO:0060429,GO:0062023,GO:0065003,GO:0065007,GO:0070013,GO:0070727,GO:0070925,GO:0070972,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097064,GO:0097458,GO:0098552,GO:0098554,GO:0098556,GO:0098562,GO:0098588,GO:0098609,GO:0098631,GO:0098827,GO:1901360,GO:1901361,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904
Evalue2.12e-102
EggNOG OGsCOG0052@1|root,KOG0830@2759|Eukaryota
EC3.2.1.50,6.4.1.4
Descriptionstructural constituent of ribosome
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011,ko04031,ko04131,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12417Gvermi12417Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4650677..4651804 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12417.t1Gvermi12417.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4650677..4651804 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12417.t1.start1Gvermi12417.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4650677..4650679 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12417.t1.CDS1Gvermi12417.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4650677..4650806 +
Gvermi12417.t1.CDS2Gvermi12417.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4651017..4651804 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12417.t1.exon1Gvermi12417.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4650677..4650806 +
Gvermi12417.t1.exon2Gvermi12417.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4651017..4651804 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12417.t1.intron1Gvermi12417.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 4650807..4651016 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12417.t1.stop1Gvermi12417.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4651802..4651804 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12417.t1 ID=Gvermi12417.t1|Name=Gvermi12417.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=306bp
MVASTALSPREEDVCKMLKCNTHLGTKNCDVLMEPYVYKRRYDGVHLINI
ATTYDKIMLAARVIAAIDNPADVVAVSARPYGQRAVLKFSHYTGAHAIAG
RWTPGQLTNQIQKKFQEPRLLVVTDPRTDAQAITEASYCNIPTIAFCDTD
SPLRYVDVAIPANNKAKHSIALLWWLLAREVLYLRGTIQRSEPWDVMVDL
FFYRDPEELDKAEEAAAAVTSALTAAPATAYDATPLDPAAFATTAPDAGA
DWSAPAPTPADFDAGAATEQMDWTADVAVTTAEASSWTIPPTGAPAETNA
FTQQF*
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spliced messenger RNA

>Gvermi12417.t1 ID=Gvermi12417.t1|Name=Gvermi12417.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=918bp|location=Sequence derived from alignment at ScGOVlb_3404:4650677..4651804+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGCATCTACCGCCTTGTCTCCTCGTGAGGAGGATGTCTGCAAGAT
GCTCAAGTGCAACACTCACTTGGGCACCAAGAACTGCGATGTTCTGATGG
AACCCTACGTGTACAAGCGTCGTTATGATGGGGTACACCTCATCAACATC
GCGACTACTTACGATAAAATCATGCTTGCTGCGCGTGTTATCGCTGCGAT
TGACAATCCCGCTGATGTCGTCGCCGTATCCGCTCGTCCGTACGGACAGC
GCGCTGTTCTGAAGTTCTCTCACTACACCGGAGCACATGCCATTGCTGGT
CGCTGGACTCCCGGCCAGCTCACCAACCAAATCCAGAAGAAATTCCAAGA
GCCCCGGCTTCTTGTCGTGACCGATCCGCGAACTGATGCCCAAGCTATTA
CTGAAGCTTCTTACTGTAACATTCCTACAATTGCTTTCTGTGACACCGAC
TCTCCTCTGCGATACGTCGATGTAGCTATTCCGGCAAACAACAAGGCGAA
GCACTCTATTGCTCTTCTTTGGTGGCTTTTGGCCCGAGAAGTCCTTTACT
TGCGTGGAACCATTCAGCGTTCAGAGCCGTGGGACGTGATGGTAGATCTC
TTCTTCTACCGTGATCCTGAGGAGCTGGACAAGGCCGAGGAGGCTGCTGC
CGCTGTAACTAGCGCACTTACTGCTGCCCCGGCTACTGCCTACGATGCAA
CCCCACTTGATCCAGCTGCCTTTGCTACCACTGCGCCTGACGCTGGCGCG
GACTGGAGCGCACCTGCACCGACGCCTGCGGACTTCGATGCCGGGGCGGC
CACCGAGCAGATGGATTGGACCGCAGACGTTGCCGTTACTACTGCTGAGG
CCAGTTCTTGGACTATTCCTCCAACTGGTGCTCCAGCAGAGACCAACGCA
TTCACCCAACAATTTTAG
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protein sequence of Gvermi12417.t1

>Gvermi12417.t1 ID=Gvermi12417.t1|Name=Gvermi12417.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=306bp
MVASTALSPREEDVCKMLKCNTHLGTKNCDVLMEPYVYKRRYDGVHLINI
ATTYDKIMLAARVIAAIDNPADVVAVSARPYGQRAVLKFSHYTGAHAIAG
RWTPGQLTNQIQKKFQEPRLLVVTDPRTDAQAITEASYCNIPTIAFCDTD
SPLRYVDVAIPANNKAKHSIALLWWLLAREVLYLRGTIQRSEPWDVMVDL
FFYRDPEELDKAEEAAAAVTSALTAAPATAYDATPLDPAAFATTAPDAGA
DWSAPAPTPADFDAGAATEQMDWTADVAVTTAEASSWTIPPTGAPAETNA
FTQQF*
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mRNA from alignment at ScGOVlb_3404:4650677..4651804+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12417.t1 ID=Gvermi12417.t1|Name=Gvermi12417.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1128bp|location=Sequence derived from alignment at ScGOVlb_3404:4650677..4651804+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTTGCATCTACCGCCTTGTCTCCTCGTGAGGAGGATGTCTGCAAGAT
GCTCAAGTGCAACACTCACTTGGGCACCAAGAACTGCGATGTTCTGATGG
AACCCTACGTGTACAAGCGTCGTTATGATGGTAAGTTGAGAGAATACTGT
TCATGTGCTTAAACATGTGTCGCAAATGAAATACGGATGCGCGCGCATCA
AATATGTGGATCTCCGTGATTTCGCGGTCGTTGTCGTTGCCAGTCGAACA
CACTTGGTTCCCCAGCAGAATTGTACTGACGTGTTTATCATATGGCGATC
TTGACCTGCTTTCTGGTCGAATCAATTGAACTTATAAAAGGGGTACACCT
CATCAACATCGCGACTACTTACGATAAAATCATGCTTGCTGCGCGTGTTA
TCGCTGCGATTGACAATCCCGCTGATGTCGTCGCCGTATCCGCTCGTCCG
TACGGACAGCGCGCTGTTCTGAAGTTCTCTCACTACACCGGAGCACATGC
CATTGCTGGTCGCTGGACTCCCGGCCAGCTCACCAACCAAATCCAGAAGA
AATTCCAAGAGCCCCGGCTTCTTGTCGTGACCGATCCGCGAACTGATGCC
CAAGCTATTACTGAAGCTTCTTACTGTAACATTCCTACAATTGCTTTCTG
TGACACCGACTCTCCTCTGCGATACGTCGATGTAGCTATTCCGGCAAACA
ACAAGGCGAAGCACTCTATTGCTCTTCTTTGGTGGCTTTTGGCCCGAGAA
GTCCTTTACTTGCGTGGAACCATTCAGCGTTCAGAGCCGTGGGACGTGAT
GGTAGATCTCTTCTTCTACCGTGATCCTGAGGAGCTGGACAAGGCCGAGG
AGGCTGCTGCCGCTGTAACTAGCGCACTTACTGCTGCCCCGGCTACTGCC
TACGATGCAACCCCACTTGATCCAGCTGCCTTTGCTACCACTGCGCCTGA
CGCTGGCGCGGACTGGAGCGCACCTGCACCGACGCCTGCGGACTTCGATG
CCGGGGCGGCCACCGAGCAGATGGATTGGACCGCAGACGTTGCCGTTACT
ACTGCTGAGGCCAGTTCTTGGACTATTCCTCCAACTGGTGCTCCAGCAGA
GACCAACGCATTCACCCAACAATTTTAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4650677..4651804+

>Gvermi12417.t1 ID=Gvermi12417.t1|Name=Gvermi12417.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=918bp|location=Sequence derived from alignment at ScGOVlb_3404:4650677..4651804+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTTGCATCTACCGCCTTGTCTCCTCGTGAGGAGGATGTCTGCAAGAT
GCTCAAGTGCAACACTCACTTGGGCACCAAGAACTGCGATGTTCTGATGG
AACCCTACGTGTACAAGCGTCGTTATGATGGGGTACACCTCATCAACATC
GCGACTACTTACGATAAAATCATGCTTGCTGCGCGTGTTATCGCTGCGAT
TGACAATCCCGCTGATGTCGTCGCCGTATCCGCTCGTCCGTACGGACAGC
GCGCTGTTCTGAAGTTCTCTCACTACACCGGAGCACATGCCATTGCTGGT
CGCTGGACTCCCGGCCAGCTCACCAACCAAATCCAGAAGAAATTCCAAGA
GCCCCGGCTTCTTGTCGTGACCGATCCGCGAACTGATGCCCAAGCTATTA
CTGAAGCTTCTTACTGTAACATTCCTACAATTGCTTTCTGTGACACCGAC
TCTCCTCTGCGATACGTCGATGTAGCTATTCCGGCAAACAACAAGGCGAA
GCACTCTATTGCTCTTCTTTGGTGGCTTTTGGCCCGAGAAGTCCTTTACT
TGCGTGGAACCATTCAGCGTTCAGAGCCGTGGGACGTGATGGTAGATCTC
TTCTTCTACCGTGATCCTGAGGAGCTGGACAAGGCCGAGGAGGCTGCTGC
CGCTGTAACTAGCGCACTTACTGCTGCCCCGGCTACTGCCTACGATGCAA
CCCCACTTGATCCAGCTGCCTTTGCTACCACTGCGCCTGACGCTGGCGCG
GACTGGAGCGCACCTGCACCGACGCCTGCGGACTTCGATGCCGGGGCGGC
CACCGAGCAGATGGATTGGACCGCAGACGTTGCCGTTACTACTGCTGAGG
CCAGTTCTTGGACTATTCCTCCAACTGGTGCTCCAGCAGAGACCAACGCA
TTCACCCAACAATTTTAG
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