Gvermi12413.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12413.t1
Unique Name	Gvermi12413.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	267

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:4640347..4641147 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	48698.ENSPFOP00000018481
Preferred name	METTL6
PFAMs	Methyltransf_12,Methyltransf_23
Max annot lvl	33208\|Metazoa
KEGG rclass	RC00003,RC00113,RC00392,RC01244
KEGG ko	ko:K00599
KEGG Reaction	R02671,R02912,R03955,R04939
GOs	GO:0001510,GO:0002946,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016427,GO:0016428,GO:0016740,GO:0016741,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360
Evalue	3.05e-64
EggNOG OGs	KOG2361@1\|root,KOG2361@2759\|Eukaryota,38CN0@33154\|Opisthokonta,3BCF5@33208\|Metazoa,3CSAG@33213\|Bilateria,4819Y@7711\|Chordata,48YE6@7742\|Vertebrata,49ZXK@7898\|Actinopterygii
Description	Methyltransferase like 6
COG category	S
BRITE	ko00000,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12413	Gvermi12413	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3404 4640347..4641147 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12413.t1.start1	Gvermi12413.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_3404 4640347..4640349 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12413.t1.CDS1	Gvermi12413.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3404 4640347..4641147 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12413.t1.exon1	Gvermi12413.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3404 4640347..4641147 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12413.t1.stop1	Gvermi12413.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_3404 4641145..4641147 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12413.t1	Gvermi12413.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3404 4640347..4641147 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3404:4640347..4641147+
coding sequence from alignment at ScGOVlb_3404:4640347..4641147+

mRNA sequence

>Gvermi12413.t1 ID=Gvermi12413.t1|Name=Gvermi12413.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=267bp
MDPDLYRSAQTQGGVSSFWTAKYENDASRNWDKFYKRNSTNFFKDRHWTA
TESTDGFPCLAAPSGAVRVVLEAGCGVANCAFPLLGLNESLFIYAFDFAP
TAVRLIRERPQYDENRIKAFVWDFCAEPFSAVDAQQRGSLSDGTADFCLL
VFVLSAVPPGKQTYGVQNLYRLLKPGGRLLFRDYATGDMAQNRFNTRSRI
DDNYFVRQDKTLSFFFDEETLRSRMCEAGFEEVYVRRVSRVIKNRKENLQ
MNRVFLQAEFVKPVAE*

spliced messenger RNA

>Gvermi12413.t1 ID=Gvermi12413.t1|Name=Gvermi12413.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=801bp|location=Sequence derived from alignment at ScGOVlb_3404:4640347..4641147+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATCCAGATCTTTACCGTTCAGCACAAACGCAAGGCGGAGTGTCCAG
TTTTTGGACCGCAAAATACGAGAATGACGCCTCGAGGAACTGGGACAAAT
TCTATAAACGAAACTCTACAAACTTCTTTAAGGACCGCCACTGGACTGCG
ACAGAGTCAACAGATGGGTTTCCATGTCTCGCTGCGCCATCTGGGGCGGT
TCGAGTTGTCCTAGAAGCTGGTTGCGGTGTGGCAAATTGCGCATTTCCAC
TCTTGGGTTTGAACGAGTCTTTGTTCATATATGCGTTTGATTTTGCGCCA
ACTGCTGTAAGGCTGATTAGGGAGAGGCCTCAATATGATGAGAACCGTAT
AAAAGCGTTTGTATGGGATTTCTGTGCAGAACCATTCAGTGCCGTAGATG
CACAACAGCGAGGGTCTTTGTCAGACGGAACGGCAGACTTTTGCTTGCTT
GTATTCGTCTTGAGCGCTGTTCCTCCAGGCAAACAAACCTATGGCGTACA
AAACTTGTATCGCCTGCTCAAGCCCGGTGGGAGGCTTTTGTTTCGCGACT
ATGCGACGGGAGATATGGCGCAGAATCGCTTCAATACGCGCAGCAGAATA
GACGACAACTATTTTGTGCGGCAGGATAAAACATTGTCATTCTTCTTCGA
CGAGGAAACTTTGCGCTCCCGCATGTGCGAAGCCGGTTTTGAGGAAGTTT
ACGTTCGAAGAGTTTCGAGAGTGATCAAGAACCGGAAAGAAAACCTGCAA
ATGAACCGCGTATTTTTGCAAGCAGAGTTTGTGAAACCGGTGGCTGAGTA
G

protein sequence of Gvermi12413.t1

>Gvermi12413.t1 ID=Gvermi12413.t1|Name=Gvermi12413.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=267bp
MDPDLYRSAQTQGGVSSFWTAKYENDASRNWDKFYKRNSTNFFKDRHWTA
TESTDGFPCLAAPSGAVRVVLEAGCGVANCAFPLLGLNESLFIYAFDFAP
TAVRLIRERPQYDENRIKAFVWDFCAEPFSAVDAQQRGSLSDGTADFCLL
VFVLSAVPPGKQTYGVQNLYRLLKPGGRLLFRDYATGDMAQNRFNTRSRI
DDNYFVRQDKTLSFFFDEETLRSRMCEAGFEEVYVRRVSRVIKNRKENLQ
MNRVFLQAEFVKPVAE*

mRNA from alignment at ScGOVlb_3404:4640347..4641147+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12413.t1 ID=Gvermi12413.t1|Name=Gvermi12413.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=801bp|location=Sequence derived from alignment at ScGOVlb_3404:4640347..4641147+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGATCCAGATCTTTACCGTTCAGCACAAACGCAAGGCGGAGTGTCCAG
TTTTTGGACCGCAAAATACGAGAATGACGCCTCGAGGAACTGGGACAAAT
TCTATAAACGAAACTCTACAAACTTCTTTAAGGACCGCCACTGGACTGCG
ACAGAGTCAACAGATGGGTTTCCATGTCTCGCTGCGCCATCTGGGGCGGT
TCGAGTTGTCCTAGAAGCTGGTTGCGGTGTGGCAAATTGCGCATTTCCAC
TCTTGGGTTTGAACGAGTCTTTGTTCATATATGCGTTTGATTTTGCGCCA
ACTGCTGTAAGGCTGATTAGGGAGAGGCCTCAATATGATGAGAACCGTAT
AAAAGCGTTTGTATGGGATTTCTGTGCAGAACCATTCAGTGCCGTAGATG
CACAACAGCGAGGGTCTTTGTCAGACGGAACGGCAGACTTTTGCTTGCTT
GTATTCGTCTTGAGCGCTGTTCCTCCAGGCAAACAAACCTATGGCGTACA
AAACTTGTATCGCCTGCTCAAGCCCGGTGGGAGGCTTTTGTTTCGCGACT
ATGCGACGGGAGATATGGCGCAGAATCGCTTCAATACGCGCAGCAGAATA
GACGACAACTATTTTGTGCGGCAGGATAAAACATTGTCATTCTTCTTCGA
CGAGGAAACTTTGCGCTCCCGCATGTGCGAAGCCGGTTTTGAGGAAGTTT
ACGTTCGAAGAGTTTCGAGAGTGATCAAGAACCGGAAAGAAAACCTGCAA
ATGAACCGCGTATTTTTGCAAGCAGAGTTTGTGAAACCGGTGGCTGAGTA
G

Coding sequence (CDS) from alignment at ScGOVlb_3404:4640347..4641147+

>Gvermi12413.t1 ID=Gvermi12413.t1|Name=Gvermi12413.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=801bp|location=Sequence derived from alignment at ScGOVlb_3404:4640347..4641147+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGATCCAGATCTTTACCGTTCAGCACAAACGCAAGGCGGAGTGTCCAG
TTTTTGGACCGCAAAATACGAGAATGACGCCTCGAGGAACTGGGACAAAT
TCTATAAACGAAACTCTACAAACTTCTTTAAGGACCGCCACTGGACTGCG
ACAGAGTCAACAGATGGGTTTCCATGTCTCGCTGCGCCATCTGGGGCGGT
TCGAGTTGTCCTAGAAGCTGGTTGCGGTGTGGCAAATTGCGCATTTCCAC
TCTTGGGTTTGAACGAGTCTTTGTTCATATATGCGTTTGATTTTGCGCCA
ACTGCTGTAAGGCTGATTAGGGAGAGGCCTCAATATGATGAGAACCGTAT
AAAAGCGTTTGTATGGGATTTCTGTGCAGAACCATTCAGTGCCGTAGATG
CACAACAGCGAGGGTCTTTGTCAGACGGAACGGCAGACTTTTGCTTGCTT
GTATTCGTCTTGAGCGCTGTTCCTCCAGGCAAACAAACCTATGGCGTACA
AAACTTGTATCGCCTGCTCAAGCCCGGTGGGAGGCTTTTGTTTCGCGACT
ATGCGACGGGAGATATGGCGCAGAATCGCTTCAATACGCGCAGCAGAATA
GACGACAACTATTTTGTGCGGCAGGATAAAACATTGTCATTCTTCTTCGA
CGAGGAAACTTTGCGCTCCCGCATGTGCGAAGCCGGTTTTGAGGAAGTTT
ACGTTCGAAGAGTTTCGAGAGTGATCAAGAACCGGAAAGAAAACCTGCAA
ATGAACCGCGTATTTTTGCAAGCAGAGTTTGTGAAACCGGTGGCTGAGTA
G