Gvermi12403.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12403.t1
Unique NameGvermi12403.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length372
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4570844..4571959 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706388.1
PFAMsAbhydrolase_6,DUF818,Hydrolase_4
Max annot lvl2759|Eukaryota
Evalue5.75e-56
EggNOG OGsCOG1073@1|root,KOG1552@2759|Eukaryota
Descriptionpalmitoyl-(protein) hydrolase activity
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12403Gvermi12403Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4570844..4571959 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12403.t1.start1Gvermi12403.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4570844..4570846 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12403.t1.CDS1Gvermi12403.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4570844..4571959 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12403.t1.exon1Gvermi12403.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4570844..4571959 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12403.t1.stop1Gvermi12403.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4571957..4571959 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12403.t1Gvermi12403.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4570844..4571959 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12403.t1 ID=Gvermi12403.t1|Name=Gvermi12403.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=372bp
MGQLYSHLVFRPPQVCSYQCVQGSIKYVVPDEDGLPTVHSADLFWLQTSL
NFRIPCAFIRHPRSQYVVIYAHTNGEDLGDSIVHAHMISRTLNVDVLAFE
YSGYGLSERPSRRLFHQNVPRPGQRVAPSLLDHDRKRAEPSEKAICADIM
AVYTFLTDTCAVAPENILVFGRSIGSGPAVYCAINRPIRGLVLIAPIASA
VRVPLKRLNVTLPFIDTFPNIDRAAKIQCPVLVIHGDIDDIVPKLHGEKL
FRKLNRNGYAVNPLWVPNARHNNVVEDFSSLVFGRYQTFLDELKLIPISA
TPNHSCEHQHYHPDRLPSSQIKMDPTTIKIEPHDRSFHTTSRWLKDYHSP
TQIKTRSTHGSHPHLSIYTGL*
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spliced messenger RNA

>Gvermi12403.t1 ID=Gvermi12403.t1|Name=Gvermi12403.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1116bp|location=Sequence derived from alignment at ScGOVlb_3404:4570844..4571959+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGCAACTCTACTCGCATCTCGTTTTTCGCCCCCCTCAAGTTTGTTC
TTACCAATGCGTACAAGGTAGCATCAAATACGTCGTGCCCGATGAGGACG
GCTTACCCACCGTGCACTCAGCCGACCTGTTCTGGCTCCAAACCTCCTTA
AATTTTCGCATCCCCTGTGCGTTCATTCGCCATCCCCGTTCTCAATACGT
CGTTATCTATGCACACACCAACGGAGAGGATCTGGGGGATAGTATTGTAC
ATGCCCACATGATCTCACGAACGTTAAACGTCGATGTGCTCGCATTTGAA
TACTCTGGATACGGTCTCTCCGAACGCCCATCACGGCGCTTGTTCCATCA
AAATGTCCCACGCCCTGGTCAGCGCGTTGCCCCGTCGCTTTTGGACCATG
ATCGGAAGCGAGCAGAGCCTTCTGAGAAGGCAATATGCGCTGACATCATG
GCTGTGTATACCTTTCTCACCGACACTTGTGCCGTAGCACCGGAGAACAT
CCTCGTGTTTGGCCGCAGTATCGGAAGCGGTCCTGCTGTGTATTGTGCAA
TCAATAGACCCATTCGCGGTCTCGTTCTCATTGCTCCCATCGCCTCTGCT
GTGCGGGTTCCGCTGAAGCGACTTAACGTCACGCTACCGTTCATCGACAC
TTTCCCGAACATAGATAGAGCCGCCAAAATTCAATGTCCCGTGCTCGTCA
TACACGGCGATATTGACGACATCGTTCCAAAGCTGCACGGAGAGAAACTG
TTCAGGAAGCTCAATCGCAACGGTTATGCTGTTAACCCACTCTGGGTCCC
AAACGCTCGTCACAACAATGTCGTCGAGGACTTTTCTTCACTTGTGTTTG
GTCGTTACCAAACGTTTCTGGATGAGCTCAAGCTAATACCAATTTCTGCC
ACACCAAATCATTCTTGTGAGCACCAACACTATCACCCGGACCGACTGCC
ATCCAGTCAAATCAAGATGGACCCTACAACGATAAAAATAGAACCACACG
ACCGCTCTTTCCACACAACTTCCAGATGGCTAAAAGACTATCACAGTCCG
ACCCAAATCAAGACAAGATCTACACATGGCTCTCATCCACACTTGAGTAT
TTATACCGGTCTGTAG
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protein sequence of Gvermi12403.t1

>Gvermi12403.t1 ID=Gvermi12403.t1|Name=Gvermi12403.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=372bp
MGQLYSHLVFRPPQVCSYQCVQGSIKYVVPDEDGLPTVHSADLFWLQTSL
NFRIPCAFIRHPRSQYVVIYAHTNGEDLGDSIVHAHMISRTLNVDVLAFE
YSGYGLSERPSRRLFHQNVPRPGQRVAPSLLDHDRKRAEPSEKAICADIM
AVYTFLTDTCAVAPENILVFGRSIGSGPAVYCAINRPIRGLVLIAPIASA
VRVPLKRLNVTLPFIDTFPNIDRAAKIQCPVLVIHGDIDDIVPKLHGEKL
FRKLNRNGYAVNPLWVPNARHNNVVEDFSSLVFGRYQTFLDELKLIPISA
TPNHSCEHQHYHPDRLPSSQIKMDPTTIKIEPHDRSFHTTSRWLKDYHSP
TQIKTRSTHGSHPHLSIYTGL*
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mRNA from alignment at ScGOVlb_3404:4570844..4571959+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12403.t1 ID=Gvermi12403.t1|Name=Gvermi12403.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1116bp|location=Sequence derived from alignment at ScGOVlb_3404:4570844..4571959+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGGCAACTCTACTCGCATCTCGTTTTTCGCCCCCCTCAAGTTTGTTC
TTACCAATGCGTACAAGGTAGCATCAAATACGTCGTGCCCGATGAGGACG
GCTTACCCACCGTGCACTCAGCCGACCTGTTCTGGCTCCAAACCTCCTTA
AATTTTCGCATCCCCTGTGCGTTCATTCGCCATCCCCGTTCTCAATACGT
CGTTATCTATGCACACACCAACGGAGAGGATCTGGGGGATAGTATTGTAC
ATGCCCACATGATCTCACGAACGTTAAACGTCGATGTGCTCGCATTTGAA
TACTCTGGATACGGTCTCTCCGAACGCCCATCACGGCGCTTGTTCCATCA
AAATGTCCCACGCCCTGGTCAGCGCGTTGCCCCGTCGCTTTTGGACCATG
ATCGGAAGCGAGCAGAGCCTTCTGAGAAGGCAATATGCGCTGACATCATG
GCTGTGTATACCTTTCTCACCGACACTTGTGCCGTAGCACCGGAGAACAT
CCTCGTGTTTGGCCGCAGTATCGGAAGCGGTCCTGCTGTGTATTGTGCAA
TCAATAGACCCATTCGCGGTCTCGTTCTCATTGCTCCCATCGCCTCTGCT
GTGCGGGTTCCGCTGAAGCGACTTAACGTCACGCTACCGTTCATCGACAC
TTTCCCGAACATAGATAGAGCCGCCAAAATTCAATGTCCCGTGCTCGTCA
TACACGGCGATATTGACGACATCGTTCCAAAGCTGCACGGAGAGAAACTG
TTCAGGAAGCTCAATCGCAACGGTTATGCTGTTAACCCACTCTGGGTCCC
AAACGCTCGTCACAACAATGTCGTCGAGGACTTTTCTTCACTTGTGTTTG
GTCGTTACCAAACGTTTCTGGATGAGCTCAAGCTAATACCAATTTCTGCC
ACACCAAATCATTCTTGTGAGCACCAACACTATCACCCGGACCGACTGCC
ATCCAGTCAAATCAAGATGGACCCTACAACGATAAAAATAGAACCACACG
ACCGCTCTTTCCACACAACTTCCAGATGGCTAAAAGACTATCACAGTCCG
ACCCAAATCAAGACAAGATCTACACATGGCTCTCATCCACACTTGAGTAT
TTATACCGGTCTGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4570844..4571959+

>Gvermi12403.t1 ID=Gvermi12403.t1|Name=Gvermi12403.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1116bp|location=Sequence derived from alignment at ScGOVlb_3404:4570844..4571959+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGGCAACTCTACTCGCATCTCGTTTTTCGCCCCCCTCAAGTTTGTTC
TTACCAATGCGTACAAGGTAGCATCAAATACGTCGTGCCCGATGAGGACG
GCTTACCCACCGTGCACTCAGCCGACCTGTTCTGGCTCCAAACCTCCTTA
AATTTTCGCATCCCCTGTGCGTTCATTCGCCATCCCCGTTCTCAATACGT
CGTTATCTATGCACACACCAACGGAGAGGATCTGGGGGATAGTATTGTAC
ATGCCCACATGATCTCACGAACGTTAAACGTCGATGTGCTCGCATTTGAA
TACTCTGGATACGGTCTCTCCGAACGCCCATCACGGCGCTTGTTCCATCA
AAATGTCCCACGCCCTGGTCAGCGCGTTGCCCCGTCGCTTTTGGACCATG
ATCGGAAGCGAGCAGAGCCTTCTGAGAAGGCAATATGCGCTGACATCATG
GCTGTGTATACCTTTCTCACCGACACTTGTGCCGTAGCACCGGAGAACAT
CCTCGTGTTTGGCCGCAGTATCGGAAGCGGTCCTGCTGTGTATTGTGCAA
TCAATAGACCCATTCGCGGTCTCGTTCTCATTGCTCCCATCGCCTCTGCT
GTGCGGGTTCCGCTGAAGCGACTTAACGTCACGCTACCGTTCATCGACAC
TTTCCCGAACATAGATAGAGCCGCCAAAATTCAATGTCCCGTGCTCGTCA
TACACGGCGATATTGACGACATCGTTCCAAAGCTGCACGGAGAGAAACTG
TTCAGGAAGCTCAATCGCAACGGTTATGCTGTTAACCCACTCTGGGTCCC
AAACGCTCGTCACAACAATGTCGTCGAGGACTTTTCTTCACTTGTGTTTG
GTCGTTACCAAACGTTTCTGGATGAGCTCAAGCTAATACCAATTTCTGCC
ACACCAAATCATTCTTGTGAGCACCAACACTATCACCCGGACCGACTGCC
ATCCAGTCAAATCAAGATGGACCCTACAACGATAAAAATAGAACCACACG
ACCGCTCTTTCCACACAACTTCCAGATGGCTAAAAGACTATCACAGTCCG
ACCCAAATCAAGACAAGATCTACACATGGCTCTCATCCACACTTGAGTAT
TTATACCGGTCTGTAG
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