Gvermi12400.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12400.t1
Unique Name	Gvermi12400.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	289

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:4562560..4563426 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3711.Bra004158.1-P
PFAMs	FoP_duplication,RRM_1
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K12881
KEGG Pathway	ko03013,ko03015,ko03040,ko05168,map03013,map03015,map03040,map05168
KEGG Module	M00406,M00430
GOs	GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0070013,GO:0097159,GO:1901363
Evalue	3.68e-11
EggNOG OGs	KOG0533@1\|root,KOG0533@2759\|Eukaryota,37MMS@33090\|Viridiplantae,3GG6X@35493\|Streptophyta,3HXVP@3699\|Brassicales
Description	Tho complex subunit
COG category	A
BRITE	ko00000,ko00001,ko00002,ko03019,ko03041

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12400	Gvermi12400	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3404 4562560..4563426 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12400.t1.stop1	Gvermi12400.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_3404 4562560..4562562 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12400.t1.CDS1	Gvermi12400.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3404 4562560..4563426 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12400.t1.exon1	Gvermi12400.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3404 4562560..4563426 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12400.t1.start1	Gvermi12400.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_3404 4563424..4563426 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12400.t1	Gvermi12400.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3404 4562560..4563426 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3404:4562560..4563426-
coding sequence from alignment at ScGOVlb_3404:4562560..4563426-

mRNA sequence

>Gvermi12400.t1 ID=Gvermi12400.t1|Name=Gvermi12400.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=289bp
MLEHHDSAAPPPPYPSSFRRRPIVVRDPKTGETRLVGGGNRRPSPGFPPP
PGAPPQPAPSPYRYRSGVDADYDRRPNAYSSFDDQGRAPIMKIVSGYRGR
QIVVRDPSRRMQPPAPAQGANLGVRGGVRKNYYDRRGTRSSPYSEEYEED
RRADYFEEENDGRLYSHGRDAEFERDHHMNEYERGFEAPHGYYRRNRSDV
QNDDEDLAGKVVFVDNLSDDVTTTGLADLFGMVGAVKELRLLYDREGNPN
GSADIVFQRRADAEAAIKTLDNVPLNNRPMHLSMGNGL*

spliced messenger RNA

>Gvermi12400.t1 ID=Gvermi12400.t1|Name=Gvermi12400.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=867bp|location=Sequence derived from alignment at ScGOVlb_3404:4562560..4563426- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCGAGCACCACGATTCCGCGGCTCCCCCCCCGCCGTACCCTTCTTC
CTTTCGCCGCCGCCCTATCGTGGTGCGCGACCCAAAAACCGGAGAGACGC
GTCTCGTAGGAGGGGGGAATCGGCGCCCTTCACCTGGCTTTCCACCGCCC
CCGGGCGCGCCTCCGCAACCCGCTCCCTCTCCGTACCGTTATCGTTCCGG
CGTCGACGCCGACTACGACCGCCGCCCAAACGCTTATTCCTCGTTCGATG
ACCAGGGGCGCGCACCGATCATGAAGATTGTGTCCGGATATCGCGGCCGT
CAGATTGTTGTGCGCGACCCCTCACGTAGAATGCAGCCACCAGCCCCGGC
TCAAGGCGCCAATCTCGGCGTCCGTGGCGGTGTCCGAAAGAATTATTACG
ACCGCAGAGGAACCAGATCCTCGCCGTATTCAGAAGAATACGAAGAGGAT
CGGCGAGCCGATTATTTCGAGGAGGAGAATGATGGTAGATTATACTCGCA
TGGAAGGGATGCCGAGTTTGAACGCGATCATCACATGAATGAGTATGAAC
GAGGATTTGAAGCGCCACACGGTTACTACAGGAGGAATCGCTCTGATGTC
CAGAACGATGATGAAGATCTTGCGGGAAAGGTTGTTTTTGTTGACAATCT
CAGTGACGATGTGACCACCACGGGATTGGCGGATCTGTTTGGAATGGTGG
GTGCTGTCAAAGAACTTCGCCTCTTGTATGATCGTGAAGGCAACCCGAAT
GGTTCGGCGGACATCGTCTTTCAGAGACGCGCAGATGCGGAAGCAGCCAT
CAAAACGTTAGACAACGTTCCGCTTAACAACCGTCCAATGCACCTTAGCA
TGGGCAATGGACTCTGA

protein sequence of Gvermi12400.t1

>Gvermi12400.t1 ID=Gvermi12400.t1|Name=Gvermi12400.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=289bp
MLEHHDSAAPPPPYPSSFRRRPIVVRDPKTGETRLVGGGNRRPSPGFPPP
PGAPPQPAPSPYRYRSGVDADYDRRPNAYSSFDDQGRAPIMKIVSGYRGR
QIVVRDPSRRMQPPAPAQGANLGVRGGVRKNYYDRRGTRSSPYSEEYEED
RRADYFEEENDGRLYSHGRDAEFERDHHMNEYERGFEAPHGYYRRNRSDV
QNDDEDLAGKVVFVDNLSDDVTTTGLADLFGMVGAVKELRLLYDREGNPN
GSADIVFQRRADAEAAIKTLDNVPLNNRPMHLSMGNGL*

mRNA from alignment at ScGOVlb_3404:4562560..4563426-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12400.t1 ID=Gvermi12400.t1|Name=Gvermi12400.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=867bp|location=Sequence derived from alignment at ScGOVlb_3404:4562560..4563426- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTCGAGCACCACGATTCCGCGGCTCCCCCCCCGCCGTACCCTTCTTC
CTTTCGCCGCCGCCCTATCGTGGTGCGCGACCCAAAAACCGGAGAGACGC
GTCTCGTAGGAGGGGGGAATCGGCGCCCTTCACCTGGCTTTCCACCGCCC
CCGGGCGCGCCTCCGCAACCCGCTCCCTCTCCGTACCGTTATCGTTCCGG
CGTCGACGCCGACTACGACCGCCGCCCAAACGCTTATTCCTCGTTCGATG
ACCAGGGGCGCGCACCGATCATGAAGATTGTGTCCGGATATCGCGGCCGT
CAGATTGTTGTGCGCGACCCCTCACGTAGAATGCAGCCACCAGCCCCGGC
TCAAGGCGCCAATCTCGGCGTCCGTGGCGGTGTCCGAAAGAATTATTACG
ACCGCAGAGGAACCAGATCCTCGCCGTATTCAGAAGAATACGAAGAGGAT
CGGCGAGCCGATTATTTCGAGGAGGAGAATGATGGTAGATTATACTCGCA
TGGAAGGGATGCCGAGTTTGAACGCGATCATCACATGAATGAGTATGAAC
GAGGATTTGAAGCGCCACACGGTTACTACAGGAGGAATCGCTCTGATGTC
CAGAACGATGATGAAGATCTTGCGGGAAAGGTTGTTTTTGTTGACAATCT
CAGTGACGATGTGACCACCACGGGATTGGCGGATCTGTTTGGAATGGTGG
GTGCTGTCAAAGAACTTCGCCTCTTGTATGATCGTGAAGGCAACCCGAAT
GGTTCGGCGGACATCGTCTTTCAGAGACGCGCAGATGCGGAAGCAGCCAT
CAAAACGTTAGACAACGTTCCGCTTAACAACCGTCCAATGCACCTTAGCA
TGGGCAATGGACTCTGA

Coding sequence (CDS) from alignment at ScGOVlb_3404:4562560..4563426-

>Gvermi12400.t1 ID=Gvermi12400.t1|Name=Gvermi12400.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=867bp|location=Sequence derived from alignment at ScGOVlb_3404:4562560..4563426- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTCGAGCACCACGATTCCGCGGCTCCCCCCCCGCCGTACCCTTCTTC
CTTTCGCCGCCGCCCTATCGTGGTGCGCGACCCAAAAACCGGAGAGACGC
GTCTCGTAGGAGGGGGGAATCGGCGCCCTTCACCTGGCTTTCCACCGCCC
CCGGGCGCGCCTCCGCAACCCGCTCCCTCTCCGTACCGTTATCGTTCCGG
CGTCGACGCCGACTACGACCGCCGCCCAAACGCTTATTCCTCGTTCGATG
ACCAGGGGCGCGCACCGATCATGAAGATTGTGTCCGGATATCGCGGCCGT
CAGATTGTTGTGCGCGACCCCTCACGTAGAATGCAGCCACCAGCCCCGGC
TCAAGGCGCCAATCTCGGCGTCCGTGGCGGTGTCCGAAAGAATTATTACG
ACCGCAGAGGAACCAGATCCTCGCCGTATTCAGAAGAATACGAAGAGGAT
CGGCGAGCCGATTATTTCGAGGAGGAGAATGATGGTAGATTATACTCGCA
TGGAAGGGATGCCGAGTTTGAACGCGATCATCACATGAATGAGTATGAAC
GAGGATTTGAAGCGCCACACGGTTACTACAGGAGGAATCGCTCTGATGTC
CAGAACGATGATGAAGATCTTGCGGGAAAGGTTGTTTTTGTTGACAATCT
CAGTGACGATGTGACCACCACGGGATTGGCGGATCTGTTTGGAATGGTGG
GTGCTGTCAAAGAACTTCGCCTCTTGTATGATCGTGAAGGCAACCCGAAT
GGTTCGGCGGACATCGTCTTTCAGAGACGCGCAGATGCGGAAGCAGCCAT
CAAAACGTTAGACAACGTTCCGCTTAACAACCGTCCAATGCACCTTAGCA
TGGGCAATGGACTCTGA