Gvermi12397.t2 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12397.t2
Unique NameGvermi12397.t2
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length501
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4555625..4557127 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12397Gvermi12397Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4555625..4557127 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12397.t2.start1Gvermi12397.t2.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4555625..4555627 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12397.t2.CDS1Gvermi12397.t2.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4555625..4557127 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12397.t2.exon1Gvermi12397.t2.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4555625..4557127 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12397.t2.stop1Gvermi12397.t2.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4557125..4557127 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12397.t2Gvermi12397.t2Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4555625..4557127 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12397.t2 ID=Gvermi12397.t2|Name=Gvermi12397.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=501bp
MTRLVRVRALCDGCSAAAATLFCVTLRNVLCETCDCVSSRSHLPHFTLTN
AITAIPFCEYCDDAPATVYCETEGAALCDKCNDTVHKAAPYSHCRTSIQN
TLRTRAVQFRSRSQSAAHKISVSQTNQQACMHKSPNANSRMDRKKQRAVS
QRAYTSSSFLSNPKLVPKPPREKQANVCDRQNGQFCPPLERSVPISRNSD
VSRNHLENTPEDLVLHQAVELQHLEPLHPLQSETDPPRHSLFHTDEYNPF
FYSRAPQSNVHVSVDTLPFSSMPSEIAEAAKSLCEPLLITEDSDIQPLET
DPLADSDSCSLDLSSVIPTTSLDPASDNTMPHVNLRPPPPSPYTSTLPGS
VPHDSTQPTSLPLDTSGDPSMWRNHTGSQSSKTATVAAAATAAAEMFLLK
SVPDAAAPKEKQNHASLMDACPEIDPRGVAAAATAAAASAAAAVNMNLGT
LSPRPPFPELSLKGRLPRHVSEPALPLRAAAQQHVFDEAMRRLDIDLVKH
*
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spliced messenger RNA

>Gvermi12397.t2 ID=Gvermi12397.t2|Name=Gvermi12397.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1503bp|location=Sequence derived from alignment at ScGOVlb_3404:4555625..4557127+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACACGTCTTGTGCGCGTGCGAGCCCTTTGCGACGGTTGCTCCGCCGC
CGCGGCCACTCTGTTTTGCGTCACCCTCCGCAACGTTCTGTGCGAAACAT
GCGACTGCGTGTCATCGCGATCCCATCTTCCGCACTTTACCCTTACTAAC
GCCATCACAGCGATCCCGTTCTGCGAGTATTGTGATGATGCGCCGGCCAC
TGTGTACTGCGAGACCGAGGGCGCAGCGCTTTGCGACAAGTGCAACGACA
CCGTGCACAAAGCTGCCCCGTATTCGCACTGCCGCACGTCTATTCAGAAC
ACTTTGCGCACCCGTGCGGTCCAGTTCCGCTCTCGGTCTCAATCAGCCGC
ACACAAGATTTCCGTCTCGCAAACCAATCAACAGGCATGCATGCACAAGT
CGCCTAACGCAAATTCGCGCATGGATCGCAAGAAGCAGCGTGCTGTTTCC
CAGCGTGCCTACACGTCCTCGTCGTTCTTAAGCAATCCAAAACTCGTTCC
GAAACCTCCACGTGAGAAACAGGCGAATGTCTGCGATCGACAGAACGGCC
AATTCTGTCCACCTCTCGAGCGAAGCGTCCCTATCTCGAGAAATTCCGAT
GTGTCCCGAAACCACCTCGAAAACACCCCTGAGGATCTTGTGCTCCATCA
GGCTGTCGAGTTACAGCACTTAGAACCCTTACACCCCTTGCAATCAGAAA
CTGACCCTCCACGCCATAGTCTCTTCCACACAGACGAATATAATCCCTTC
TTTTACTCCCGTGCTCCACAGTCTAACGTTCACGTGTCTGTTGATACTTT
ACCTTTTTCATCAATGCCCAGCGAGATAGCCGAGGCCGCCAAGTCATTAT
GTGAGCCGCTTCTGATCACCGAAGACTCAGATATCCAGCCGCTGGAGACA
GATCCTCTTGCCGATTCGGACTCGTGCTCTCTTGACCTTAGCAGCGTCAT
TCCTACTACGTCCTTGGACCCCGCATCGGATAATACTATGCCGCATGTCA
ACCTCAGGCCACCACCTCCATCTCCGTATACATCTACGCTTCCCGGATCT
GTTCCACACGATTCTACTCAACCTACCTCCCTTCCTCTCGATACTTCAGG
TGACCCCTCCATGTGGCGAAACCACACCGGAAGCCAATCATCTAAAACCG
CTACAGTGGCGGCAGCCGCAACCGCAGCTGCAGAGATGTTTTTACTGAAA
AGTGTGCCTGACGCAGCTGCACCGAAAGAGAAACAAAATCATGCGTCCCT
CATGGACGCCTGTCCTGAGATTGATCCCAGGGGGGTGgccgcggccgcta
ctgcagccgctgcgtccgccgcagccgccgTCAATATGAATCTAGGAACG
CTCTCTCCTCGGCCCCCCTTTCCTGAACTGTCGCTCAAGGGTCGGCTGCC
CAGACATGTTTCGGAGCCGGCCCTCCCACTTCGAGCGGCAGCGCAGCAGC
ATGTGTTTGACGAGGCTATGAGGCGACTTGACATAGACTTGGTTAAACAT
TGA
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protein sequence of Gvermi12397.t2

>Gvermi12397.t2 ID=Gvermi12397.t2|Name=Gvermi12397.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=501bp
MTRLVRVRALCDGCSAAAATLFCVTLRNVLCETCDCVSSRSHLPHFTLTN
AITAIPFCEYCDDAPATVYCETEGAALCDKCNDTVHKAAPYSHCRTSIQN
TLRTRAVQFRSRSQSAAHKISVSQTNQQACMHKSPNANSRMDRKKQRAVS
QRAYTSSSFLSNPKLVPKPPREKQANVCDRQNGQFCPPLERSVPISRNSD
VSRNHLENTPEDLVLHQAVELQHLEPLHPLQSETDPPRHSLFHTDEYNPF
FYSRAPQSNVHVSVDTLPFSSMPSEIAEAAKSLCEPLLITEDSDIQPLET
DPLADSDSCSLDLSSVIPTTSLDPASDNTMPHVNLRPPPPSPYTSTLPGS
VPHDSTQPTSLPLDTSGDPSMWRNHTGSQSSKTATVAAAATAAAEMFLLK
SVPDAAAPKEKQNHASLMDACPEIDPRGVAAAATAAAASAAAAVNMNLGT
LSPRPPFPELSLKGRLPRHVSEPALPLRAAAQQHVFDEAMRRLDIDLVKH
*
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mRNA from alignment at ScGOVlb_3404:4555625..4557127+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12397.t2 ID=Gvermi12397.t2|Name=Gvermi12397.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1503bp|location=Sequence derived from alignment at ScGOVlb_3404:4555625..4557127+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACACGTCTTGTGCGCGTGCGAGCCCTTTGCGACGGTTGCTCCGCCGC
CGCGGCCACTCTGTTTTGCGTCACCCTCCGCAACGTTCTGTGCGAAACAT
GCGACTGCGTGTCATCGCGATCCCATCTTCCGCACTTTACCCTTACTAAC
GCCATCACAGCGATCCCGTTCTGCGAGTATTGTGATGATGCGCCGGCCAC
TGTGTACTGCGAGACCGAGGGCGCAGCGCTTTGCGACAAGTGCAACGACA
CCGTGCACAAAGCTGCCCCGTATTCGCACTGCCGCACGTCTATTCAGAAC
ACTTTGCGCACCCGTGCGGTCCAGTTCCGCTCTCGGTCTCAATCAGCCGC
ACACAAGATTTCCGTCTCGCAAACCAATCAACAGGCATGCATGCACAAGT
CGCCTAACGCAAATTCGCGCATGGATCGCAAGAAGCAGCGTGCTGTTTCC
CAGCGTGCCTACACGTCCTCGTCGTTCTTAAGCAATCCAAAACTCGTTCC
GAAACCTCCACGTGAGAAACAGGCGAATGTCTGCGATCGACAGAACGGCC
AATTCTGTCCACCTCTCGAGCGAAGCGTCCCTATCTCGAGAAATTCCGAT
GTGTCCCGAAACCACCTCGAAAACACCCCTGAGGATCTTGTGCTCCATCA
GGCTGTCGAGTTACAGCACTTAGAACCCTTACACCCCTTGCAATCAGAAA
CTGACCCTCCACGCCATAGTCTCTTCCACACAGACGAATATAATCCCTTC
TTTTACTCCCGTGCTCCACAGTCTAACGTTCACGTGTCTGTTGATACTTT
ACCTTTTTCATCAATGCCCAGCGAGATAGCCGAGGCCGCCAAGTCATTAT
GTGAGCCGCTTCTGATCACCGAAGACTCAGATATCCAGCCGCTGGAGACA
GATCCTCTTGCCGATTCGGACTCGTGCTCTCTTGACCTTAGCAGCGTCAT
TCCTACTACGTCCTTGGACCCCGCATCGGATAATACTATGCCGCATGTCA
ACCTCAGGCCACCACCTCCATCTCCGTATACATCTACGCTTCCCGGATCT
GTTCCACACGATTCTACTCAACCTACCTCCCTTCCTCTCGATACTTCAGG
TGACCCCTCCATGTGGCGAAACCACACCGGAAGCCAATCATCTAAAACCG
CTACAGTGGCGGCAGCCGCAACCGCAGCTGCAGAGATGTTTTTACTGAAA
AGTGTGCCTGACGCAGCTGCACCGAAAGAGAAACAAAATCATGCGTCCCT
CATGGACGCCTGTCCTGAGATTGATCCCAGGGGGGTGgccgcggccgcta
ctgcagccgctgcgtccgccgcagccgccgTCAATATGAATCTAGGAACG
CTCTCTCCTCGGCCCCCCTTTCCTGAACTGTCGCTCAAGGGTCGGCTGCC
CAGACATGTTTCGGAGCCGGCCCTCCCACTTCGAGCGGCAGCGCAGCAGC
ATGTGTTTGACGAGGCTATGAGGCGACTTGACATAGACTTGGTTAAACAT
TGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4555625..4557127+

>Gvermi12397.t2 ID=Gvermi12397.t2|Name=Gvermi12397.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1503bp|location=Sequence derived from alignment at ScGOVlb_3404:4555625..4557127+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACACGTCTTGTGCGCGTGCGAGCCCTTTGCGACGGTTGCTCCGCCGC
CGCGGCCACTCTGTTTTGCGTCACCCTCCGCAACGTTCTGTGCGAAACAT
GCGACTGCGTGTCATCGCGATCCCATCTTCCGCACTTTACCCTTACTAAC
GCCATCACAGCGATCCCGTTCTGCGAGTATTGTGATGATGCGCCGGCCAC
TGTGTACTGCGAGACCGAGGGCGCAGCGCTTTGCGACAAGTGCAACGACA
CCGTGCACAAAGCTGCCCCGTATTCGCACTGCCGCACGTCTATTCAGAAC
ACTTTGCGCACCCGTGCGGTCCAGTTCCGCTCTCGGTCTCAATCAGCCGC
ACACAAGATTTCCGTCTCGCAAACCAATCAACAGGCATGCATGCACAAGT
CGCCTAACGCAAATTCGCGCATGGATCGCAAGAAGCAGCGTGCTGTTTCC
CAGCGTGCCTACACGTCCTCGTCGTTCTTAAGCAATCCAAAACTCGTTCC
GAAACCTCCACGTGAGAAACAGGCGAATGTCTGCGATCGACAGAACGGCC
AATTCTGTCCACCTCTCGAGCGAAGCGTCCCTATCTCGAGAAATTCCGAT
GTGTCCCGAAACCACCTCGAAAACACCCCTGAGGATCTTGTGCTCCATCA
GGCTGTCGAGTTACAGCACTTAGAACCCTTACACCCCTTGCAATCAGAAA
CTGACCCTCCACGCCATAGTCTCTTCCACACAGACGAATATAATCCCTTC
TTTTACTCCCGTGCTCCACAGTCTAACGTTCACGTGTCTGTTGATACTTT
ACCTTTTTCATCAATGCCCAGCGAGATAGCCGAGGCCGCCAAGTCATTAT
GTGAGCCGCTTCTGATCACCGAAGACTCAGATATCCAGCCGCTGGAGACA
GATCCTCTTGCCGATTCGGACTCGTGCTCTCTTGACCTTAGCAGCGTCAT
TCCTACTACGTCCTTGGACCCCGCATCGGATAATACTATGCCGCATGTCA
ACCTCAGGCCACCACCTCCATCTCCGTATACATCTACGCTTCCCGGATCT
GTTCCACACGATTCTACTCAACCTACCTCCCTTCCTCTCGATACTTCAGG
TGACCCCTCCATGTGGCGAAACCACACCGGAAGCCAATCATCTAAAACCG
CTACAGTGGCGGCAGCCGCAACCGCAGCTGCAGAGATGTTTTTACTGAAA
AGTGTGCCTGACGCAGCTGCACCGAAAGAGAAACAAAATCATGCGTCCCT
CATGGACGCCTGTCCTGAGATTGATCCCAGGGGGGTGgccgcggccgcta
ctgcagccgctgcgtccgccgcagccgccgTCAATATGAATCTAGGAACG
CTCTCTCCTCGGCCCCCCTTTCCTGAACTGTCGCTCAAGGGTCGGCTGCC
CAGACATGTTTCGGAGCCGGCCCTCCCACTTCGAGCGGCAGCGCAGCAGC
ATGTGTTTGACGAGGCTATGAGGCGACTTGACATAGACTTGGTTAAACAT
TGA
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