Gvermi12396.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12396.t1
Unique Name	Gvermi12396.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	517

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:4495638..4497188 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMS220CT
PFAMs	PHO4
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K03306,ko:K14640
KEGG TC	2.A.20,2.A.20.2
Evalue	5.91e-125
EggNOG OGs	COG0306@1\|root,KOG2493@2759\|Eukaryota
Description	inorganic phosphate transmembrane transporter activity
COG category	U
BRITE	ko00000,ko02000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12396	Gvermi12396	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3404 4495638..4497188 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12396.t1.start1	Gvermi12396.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_3404 4495638..4495640 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12396.t1.CDS1	Gvermi12396.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3404 4495638..4497188 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12396.t1.exon1	Gvermi12396.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3404 4495638..4497188 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12396.t1.stop1	Gvermi12396.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_3404 4497186..4497188 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12396.t1	Gvermi12396.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3404 4495638..4497188 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3404:4495638..4497188+
coding sequence from alignment at ScGOVlb_3404:4495638..4497188+

mRNA sequence

>Gvermi12396.t1 ID=Gvermi12396.t1|Name=Gvermi12396.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=517bp
MQPAAPSSAFVRALPLAAGASATSSLCHARPSLRRSRFVVPLPRVRQPVL
PAPPPADSAAGATPMPAKCTPRAAILTPGLLVVAGGVVAFALSAALGAND
VANSLGTSVGTGAIKVPTALAIGAVMEFAGAVLFGSTVTKTISSGVVTIG
AATFAAPVSYMLGMLAVLFGCTVWMAVATKFGLPVSSTHSVVGALIGLGL
VSGWGINYGAVQRIVASWFLSPLIGGVIATMLYKIISIAIVDAKRPAQAT
RRFLPVLAGGASFVLTMFVLGKGVRFAQALTPDRVLYIALGVAFACSGVA
GALATAIHSRQYITRKFGINDDGSLSNSSLLEVSLSEQREDVERIFKVLQ
VVTACLLSFSHGSNDVSNAIGPFAAIFSMWKNNGRIDGLVMIPPWVLVLG
GLGISTGLGLFGKPVMETVGKKITKLKPTMGFAVELSTALTVLVASELGL
PVSTTHTLIGCIVAIGLSNGDSKAVNKNTLASIAGSWGVTLPFSALVTVV
FYVALRPFLPVVPALP*

spliced messenger RNA

>Gvermi12396.t1 ID=Gvermi12396.t1|Name=Gvermi12396.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1551bp|location=Sequence derived from alignment at ScGOVlb_3404:4495638..4497188+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCCCGCCGCCCCGTCGAGCGCCTTCGTGCGCGCGCTGCCGCTTGC
CGCCGGCGCCAGCGCCACCTCGTCCCTGTGCCACGCGCGCCCTTCGTTGC
GTCGCAGCCGCTTCGTTGTGCCCTTGCCACGCGTCAGGCAGCCCGTCTTG
CCTGCTCCCCCCCCCGCGGATAGCGCGGCCGGCGCCACGCCCATGCCCGC
CAAATGCACCCCCCGCGCCGCCATTCTTACTCCGGGACTCCTCGTGGTTG
CCGGCGGCGTCGTCGCGTTCGCGCTTAGTGCCGCGTTGGGTGCCAATGAT
GTGGCCAATTCGCTGGGCACCTCAGTCGGGACGGGCGCCATCAAGGTGCC
TACCGCCCTCGCCATTGGCGCCGTCATGGAGTTTGCCGGCGCTGTGTTGT
TCGGCAGCACCGTTACAAAGACCATTTCATCGGGTGTCGTCACAATTGGA
GCCGCCACGTTCGCCGCCCCTGTCAGCTACATGCTCGGCATGCTCGCCGT
GCTTTTCGGCTGTACCGTGTGGATGGCCGTGGCCACCAAGTTTGGTCTGC
CCGTGTCTTCGACGCACTCCGTCGTCGGTGCGCTAATCGGTTTGGGACTG
GTGTCCGGCTGGGGCATCAACTACGGCGCTGTGCAACGCATCGTGGCCAG
CTGGTTCCTGTCACCGCTTATCGGCGGCGTGATCGCCACGATGCTCTACA
AGATAATCAGCATCGCCATTGTAGACGCAAAGAGACCAGCGCAGGCTACG
CGCCGCTTTCTGCCTGTACTGGCCGGTGGCGCATCGTTTGTGCTCACTAT
GTTCGTTCTTGGAAAGGGCGTACGGTTCGCGCAAGCGCTCACGCCCGATC
GCGTGCTATACATCGCCCTGGGAGTTGCCTTTGCGTGTTCCGGAGTTGCA
GGCGCGTTGGCGACCGCAATACATTCCAGACAGTATATTACACGCAAGTT
TGGTATTAATGATGATGGATCTCTCTCCAACTCATCGCTGCTGGAAGTTT
CACTTTCCGAGCAGCGAGAAGACGTGGAGCGCATTTTCAAGGTATTGCAG
GTGGTGACGGCTTGCTTGCTGTCTTTCTCTCATGGATCAAATGATGTGTC
TAATGCCATTGGACCGTTCGCGGCGATATTTTCCATGTGGAAGAATAATG
GACGGATTGATGGCTTAGTGATGATTCCGCCATGGGTACTCGTACTGGGC
GGGCTGGGCATCTCCACTGGGCTTGGACTGTTTGGAAAGCCAGTGATGGA
AACAGTTGGCAAAAAAATTACAAAGTTGAAGCCGACTATGGGATTCGCTG
TGGAGCTGAGCACTGCACTGACGGTACTGGTTGCTTCGGAATTGGGACTG
CCCGTTTCAACTACTCATACGCTTATCGGTTGCATCGTGGCCATCGGGTT
GTCAAACGGTGATTCAAAGGCAGTGAACAAGAACACGTTGGCGAGTATTG
CGGGGTCGTGGGGAGTAACTTTGCCGTTTTCCGCGTTGGTTACTGTTGTC
TTTTACGTAGCTCTTCGGCCATTCCTACCCGTGGTTCCGGCGCTTCCATA
G

protein sequence of Gvermi12396.t1

>Gvermi12396.t1 ID=Gvermi12396.t1|Name=Gvermi12396.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=517bp
MQPAAPSSAFVRALPLAAGASATSSLCHARPSLRRSRFVVPLPRVRQPVL
PAPPPADSAAGATPMPAKCTPRAAILTPGLLVVAGGVVAFALSAALGAND
VANSLGTSVGTGAIKVPTALAIGAVMEFAGAVLFGSTVTKTISSGVVTIG
AATFAAPVSYMLGMLAVLFGCTVWMAVATKFGLPVSSTHSVVGALIGLGL
VSGWGINYGAVQRIVASWFLSPLIGGVIATMLYKIISIAIVDAKRPAQAT
RRFLPVLAGGASFVLTMFVLGKGVRFAQALTPDRVLYIALGVAFACSGVA
GALATAIHSRQYITRKFGINDDGSLSNSSLLEVSLSEQREDVERIFKVLQ
VVTACLLSFSHGSNDVSNAIGPFAAIFSMWKNNGRIDGLVMIPPWVLVLG
GLGISTGLGLFGKPVMETVGKKITKLKPTMGFAVELSTALTVLVASELGL
PVSTTHTLIGCIVAIGLSNGDSKAVNKNTLASIAGSWGVTLPFSALVTVV
FYVALRPFLPVVPALP*

mRNA from alignment at ScGOVlb_3404:4495638..4497188+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12396.t1 ID=Gvermi12396.t1|Name=Gvermi12396.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1551bp|location=Sequence derived from alignment at ScGOVlb_3404:4495638..4497188+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAGCCCGCCGCCCCGTCGAGCGCCTTCGTGCGCGCGCTGCCGCTTGC
CGCCGGCGCCAGCGCCACCTCGTCCCTGTGCCACGCGCGCCCTTCGTTGC
GTCGCAGCCGCTTCGTTGTGCCCTTGCCACGCGTCAGGCAGCCCGTCTTG
CCTGCTCCCCCCCCCGCGGATAGCGCGGCCGGCGCCACGCCCATGCCCGC
CAAATGCACCCCCCGCGCCGCCATTCTTACTCCGGGACTCCTCGTGGTTG
CCGGCGGCGTCGTCGCGTTCGCGCTTAGTGCCGCGTTGGGTGCCAATGAT
GTGGCCAATTCGCTGGGCACCTCAGTCGGGACGGGCGCCATCAAGGTGCC
TACCGCCCTCGCCATTGGCGCCGTCATGGAGTTTGCCGGCGCTGTGTTGT
TCGGCAGCACCGTTACAAAGACCATTTCATCGGGTGTCGTCACAATTGGA
GCCGCCACGTTCGCCGCCCCTGTCAGCTACATGCTCGGCATGCTCGCCGT
GCTTTTCGGCTGTACCGTGTGGATGGCCGTGGCCACCAAGTTTGGTCTGC
CCGTGTCTTCGACGCACTCCGTCGTCGGTGCGCTAATCGGTTTGGGACTG
GTGTCCGGCTGGGGCATCAACTACGGCGCTGTGCAACGCATCGTGGCCAG
CTGGTTCCTGTCACCGCTTATCGGCGGCGTGATCGCCACGATGCTCTACA
AGATAATCAGCATCGCCATTGTAGACGCAAAGAGACCAGCGCAGGCTACG
CGCCGCTTTCTGCCTGTACTGGCCGGTGGCGCATCGTTTGTGCTCACTAT
GTTCGTTCTTGGAAAGGGCGTACGGTTCGCGCAAGCGCTCACGCCCGATC
GCGTGCTATACATCGCCCTGGGAGTTGCCTTTGCGTGTTCCGGAGTTGCA
GGCGCGTTGGCGACCGCAATACATTCCAGACAGTATATTACACGCAAGTT
TGGTATTAATGATGATGGATCTCTCTCCAACTCATCGCTGCTGGAAGTTT
CACTTTCCGAGCAGCGAGAAGACGTGGAGCGCATTTTCAAGGTATTGCAG
GTGGTGACGGCTTGCTTGCTGTCTTTCTCTCATGGATCAAATGATGTGTC
TAATGCCATTGGACCGTTCGCGGCGATATTTTCCATGTGGAAGAATAATG
GACGGATTGATGGCTTAGTGATGATTCCGCCATGGGTACTCGTACTGGGC
GGGCTGGGCATCTCCACTGGGCTTGGACTGTTTGGAAAGCCAGTGATGGA
AACAGTTGGCAAAAAAATTACAAAGTTGAAGCCGACTATGGGATTCGCTG
TGGAGCTGAGCACTGCACTGACGGTACTGGTTGCTTCGGAATTGGGACTG
CCCGTTTCAACTACTCATACGCTTATCGGTTGCATCGTGGCCATCGGGTT
GTCAAACGGTGATTCAAAGGCAGTGAACAAGAACACGTTGGCGAGTATTG
CGGGGTCGTGGGGAGTAACTTTGCCGTTTTCCGCGTTGGTTACTGTTGTC
TTTTACGTAGCTCTTCGGCCATTCCTACCCGTGGTTCCGGCGCTTCCATA
G

Coding sequence (CDS) from alignment at ScGOVlb_3404:4495638..4497188+

>Gvermi12396.t1 ID=Gvermi12396.t1|Name=Gvermi12396.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1551bp|location=Sequence derived from alignment at ScGOVlb_3404:4495638..4497188+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAGCCCGCCGCCCCGTCGAGCGCCTTCGTGCGCGCGCTGCCGCTTGC
CGCCGGCGCCAGCGCCACCTCGTCCCTGTGCCACGCGCGCCCTTCGTTGC
GTCGCAGCCGCTTCGTTGTGCCCTTGCCACGCGTCAGGCAGCCCGTCTTG
CCTGCTCCCCCCCCCGCGGATAGCGCGGCCGGCGCCACGCCCATGCCCGC
CAAATGCACCCCCCGCGCCGCCATTCTTACTCCGGGACTCCTCGTGGTTG
CCGGCGGCGTCGTCGCGTTCGCGCTTAGTGCCGCGTTGGGTGCCAATGAT
GTGGCCAATTCGCTGGGCACCTCAGTCGGGACGGGCGCCATCAAGGTGCC
TACCGCCCTCGCCATTGGCGCCGTCATGGAGTTTGCCGGCGCTGTGTTGT
TCGGCAGCACCGTTACAAAGACCATTTCATCGGGTGTCGTCACAATTGGA
GCCGCCACGTTCGCCGCCCCTGTCAGCTACATGCTCGGCATGCTCGCCGT
GCTTTTCGGCTGTACCGTGTGGATGGCCGTGGCCACCAAGTTTGGTCTGC
CCGTGTCTTCGACGCACTCCGTCGTCGGTGCGCTAATCGGTTTGGGACTG
GTGTCCGGCTGGGGCATCAACTACGGCGCTGTGCAACGCATCGTGGCCAG
CTGGTTCCTGTCACCGCTTATCGGCGGCGTGATCGCCACGATGCTCTACA
AGATAATCAGCATCGCCATTGTAGACGCAAAGAGACCAGCGCAGGCTACG
CGCCGCTTTCTGCCTGTACTGGCCGGTGGCGCATCGTTTGTGCTCACTAT
GTTCGTTCTTGGAAAGGGCGTACGGTTCGCGCAAGCGCTCACGCCCGATC
GCGTGCTATACATCGCCCTGGGAGTTGCCTTTGCGTGTTCCGGAGTTGCA
GGCGCGTTGGCGACCGCAATACATTCCAGACAGTATATTACACGCAAGTT
TGGTATTAATGATGATGGATCTCTCTCCAACTCATCGCTGCTGGAAGTTT
CACTTTCCGAGCAGCGAGAAGACGTGGAGCGCATTTTCAAGGTATTGCAG
GTGGTGACGGCTTGCTTGCTGTCTTTCTCTCATGGATCAAATGATGTGTC
TAATGCCATTGGACCGTTCGCGGCGATATTTTCCATGTGGAAGAATAATG
GACGGATTGATGGCTTAGTGATGATTCCGCCATGGGTACTCGTACTGGGC
GGGCTGGGCATCTCCACTGGGCTTGGACTGTTTGGAAAGCCAGTGATGGA
AACAGTTGGCAAAAAAATTACAAAGTTGAAGCCGACTATGGGATTCGCTG
TGGAGCTGAGCACTGCACTGACGGTACTGGTTGCTTCGGAATTGGGACTG
CCCGTTTCAACTACTCATACGCTTATCGGTTGCATCGTGGCCATCGGGTT
GTCAAACGGTGATTCAAAGGCAGTGAACAAGAACACGTTGGCGAGTATTG
CGGGGTCGTGGGGAGTAACTTTGCCGTTTTCCGCGTTGGTTACTGTTGTC
TTTTACGTAGCTCTTCGGCCATTCCTACCCGTGGTTCCGGCGCTTCCATA
G