Gvermi12390.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12390.t1
Unique NameGvermi12390.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length297
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4471442..4472332 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705214.1
PFAMsDiphthami_syn_2,Ribonuc_L-PSP
Max annot lvl2759|Eukaryota
KEGG rclassRC00358,RC03275,RC03354
KEGG koko:K06927,ko:K09022
KEGG ReactionR03613,R11098,R11099
Evalue8.21e-82
EggNOG OGsCOG0251@1|root,KOG2317@2759|Eukaryota
EC3.5.99.10,6.3.1.14
Descriptionendoribonuclease L-PSP
COG categoryJ
BRITEko00000,ko01000,ko03012
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12390Gvermi12390Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4471442..4472332 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12390.t1.start1Gvermi12390.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4471442..4471444 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12390.t1.CDS1Gvermi12390.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4471442..4472332 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12390.t1.exon1Gvermi12390.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4471442..4472332 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12390.t1.stop1Gvermi12390.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4472330..4472332 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12390.t1Gvermi12390.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4471442..4472332 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12390.t1 ID=Gvermi12390.t1|Name=Gvermi12390.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=297bp
MTNIACTFVSSFTPNGAYRINKFSVSSPKIQHSFARRPRITSVMTDNVRQ
HSDIKRFLPGPRFNQIVVHGGVVYLAGQVARGTDGSVAGQTRAILQKIDS
LLEQAGTDKSRLLTTNIWISDMSKFSEMNAEWEKWVDKDNMPVRACVQST
LADGSITVEIQATAALPSPAKIISTEEAAAAVGPYNQGVVVDDGTIYVSG
CIGLMPRTAIMAGDTVEDQTKQALLNLKAIVEAAGATVQDIVKTTILLDD
IADFAAVNSIYSKFFEGGSVPARSCFAAKQLPKAALVEIEAIAKLQ*
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spliced messenger RNA

>Gvermi12390.t1 ID=Gvermi12390.t1|Name=Gvermi12390.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=891bp|location=Sequence derived from alignment at ScGOVlb_3404:4471442..4472332+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAAATATTGCTTGCACGTTTGTATCATCATTCACGCCCAACGGCGC
CTACCGAATCAATAAGTTTTCCGTGTCCTCCCCAAAAATACAGCACTCTT
TCGCACGCCGCCCAAGAATCACGTCTGTGATGACCGACAACGTTCGTCAG
CATTCTGATATCAAACGCTTTCTTCCTGGGCCTCGTTTCAATCAGATCGT
GGTTCATGGTGGAGTTGTGTACTTGGCTGGGCAAGTTGCTCGTGGCACAG
ATGGCTCTGTAGCGGGGCAGACGCGCGCCATTCTCCAGAAGATCGATAGT
CTGCTTGAACAAGCTGGTACCGACAAGTCTCGCTTGCTCACCACGAATAT
CTGGATCTCTGACATGTCAAAGTTCTCGGAGATGAACGCTGAATGGGAAA
AGTGGGTTGACAAGGACAATATGCCAGTGCGCGCCTGCGTTCAGTCCACC
CTTGCTGACGGTTCAATAACCGTTGAAATTCAGGCCACTGCAGCATTGCC
ATCGCCGGCAAAAATCATCAGCACGGAGGAAGCAGCCGCGGCCGTTGGAC
CCTACAATCAAGGAGTGGTGGTTGACGATGGCACTATCTACGTCAGTGGC
TGCATCGGCCTCATGCCCCGAACTGCCATTATGGCGGGTGACACTGTTGA
AGACCAAACAAAGCAAGCTCTACTAAACCTCAAAGCAATTGTTGAAGCGG
CTGGCGCCACCGTGCAGGATATCGTCAAGACGACTATACTATTGGACGAC
ATCGCTGATTTTGCCGCTGTAAATTCCATTTACTCTAAGTTCTTTGAAGG
AGGCTCAGTGCCAGCACGATCTTGCTTTGCTGCAAAACAATTGCCAAAAG
CAGCCTTGGTAGAGATCGAAGCTATAGCAAAGCTGCAGTGA
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protein sequence of Gvermi12390.t1

>Gvermi12390.t1 ID=Gvermi12390.t1|Name=Gvermi12390.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=297bp
MTNIACTFVSSFTPNGAYRINKFSVSSPKIQHSFARRPRITSVMTDNVRQ
HSDIKRFLPGPRFNQIVVHGGVVYLAGQVARGTDGSVAGQTRAILQKIDS
LLEQAGTDKSRLLTTNIWISDMSKFSEMNAEWEKWVDKDNMPVRACVQST
LADGSITVEIQATAALPSPAKIISTEEAAAAVGPYNQGVVVDDGTIYVSG
CIGLMPRTAIMAGDTVEDQTKQALLNLKAIVEAAGATVQDIVKTTILLDD
IADFAAVNSIYSKFFEGGSVPARSCFAAKQLPKAALVEIEAIAKLQ*
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mRNA from alignment at ScGOVlb_3404:4471442..4472332+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12390.t1 ID=Gvermi12390.t1|Name=Gvermi12390.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=891bp|location=Sequence derived from alignment at ScGOVlb_3404:4471442..4472332+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACAAATATTGCTTGCACGTTTGTATCATCATTCACGCCCAACGGCGC
CTACCGAATCAATAAGTTTTCCGTGTCCTCCCCAAAAATACAGCACTCTT
TCGCACGCCGCCCAAGAATCACGTCTGTGATGACCGACAACGTTCGTCAG
CATTCTGATATCAAACGCTTTCTTCCTGGGCCTCGTTTCAATCAGATCGT
GGTTCATGGTGGAGTTGTGTACTTGGCTGGGCAAGTTGCTCGTGGCACAG
ATGGCTCTGTAGCGGGGCAGACGCGCGCCATTCTCCAGAAGATCGATAGT
CTGCTTGAACAAGCTGGTACCGACAAGTCTCGCTTGCTCACCACGAATAT
CTGGATCTCTGACATGTCAAAGTTCTCGGAGATGAACGCTGAATGGGAAA
AGTGGGTTGACAAGGACAATATGCCAGTGCGCGCCTGCGTTCAGTCCACC
CTTGCTGACGGTTCAATAACCGTTGAAATTCAGGCCACTGCAGCATTGCC
ATCGCCGGCAAAAATCATCAGCACGGAGGAAGCAGCCGCGGCCGTTGGAC
CCTACAATCAAGGAGTGGTGGTTGACGATGGCACTATCTACGTCAGTGGC
TGCATCGGCCTCATGCCCCGAACTGCCATTATGGCGGGTGACACTGTTGA
AGACCAAACAAAGCAAGCTCTACTAAACCTCAAAGCAATTGTTGAAGCGG
CTGGCGCCACCGTGCAGGATATCGTCAAGACGACTATACTATTGGACGAC
ATCGCTGATTTTGCCGCTGTAAATTCCATTTACTCTAAGTTCTTTGAAGG
AGGCTCAGTGCCAGCACGATCTTGCTTTGCTGCAAAACAATTGCCAAAAG
CAGCCTTGGTAGAGATCGAAGCTATAGCAAAGCTGCAGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4471442..4472332+

>Gvermi12390.t1 ID=Gvermi12390.t1|Name=Gvermi12390.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=891bp|location=Sequence derived from alignment at ScGOVlb_3404:4471442..4472332+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACAAATATTGCTTGCACGTTTGTATCATCATTCACGCCCAACGGCGC
CTACCGAATCAATAAGTTTTCCGTGTCCTCCCCAAAAATACAGCACTCTT
TCGCACGCCGCCCAAGAATCACGTCTGTGATGACCGACAACGTTCGTCAG
CATTCTGATATCAAACGCTTTCTTCCTGGGCCTCGTTTCAATCAGATCGT
GGTTCATGGTGGAGTTGTGTACTTGGCTGGGCAAGTTGCTCGTGGCACAG
ATGGCTCTGTAGCGGGGCAGACGCGCGCCATTCTCCAGAAGATCGATAGT
CTGCTTGAACAAGCTGGTACCGACAAGTCTCGCTTGCTCACCACGAATAT
CTGGATCTCTGACATGTCAAAGTTCTCGGAGATGAACGCTGAATGGGAAA
AGTGGGTTGACAAGGACAATATGCCAGTGCGCGCCTGCGTTCAGTCCACC
CTTGCTGACGGTTCAATAACCGTTGAAATTCAGGCCACTGCAGCATTGCC
ATCGCCGGCAAAAATCATCAGCACGGAGGAAGCAGCCGCGGCCGTTGGAC
CCTACAATCAAGGAGTGGTGGTTGACGATGGCACTATCTACGTCAGTGGC
TGCATCGGCCTCATGCCCCGAACTGCCATTATGGCGGGTGACACTGTTGA
AGACCAAACAAAGCAAGCTCTACTAAACCTCAAAGCAATTGTTGAAGCGG
CTGGCGCCACCGTGCAGGATATCGTCAAGACGACTATACTATTGGACGAC
ATCGCTGATTTTGCCGCTGTAAATTCCATTTACTCTAAGTTCTTTGAAGG
AGGCTCAGTGCCAGCACGATCTTGCTTTGCTGCAAAACAATTGCCAAAAG
CAGCCTTGGTAGAGATCGAAGCTATAGCAAAGCTGCAGTGA
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