Gvermi12389.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12389.t1
Unique NameGvermi12389.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length496
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4466506..4467993 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog36080.S2K1G5
Preferred nameMCA1
PFAMsPeptidase_C14
Max annot lvl4751|Fungi
GOsGO:0003674,GO:0003824,GO:0004175,GO:0004197,GO:0004198,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006508,GO:0006515,GO:0006807,GO:0006915,GO:0008150,GO:0008152,GO:0008219,GO:0008233,GO:0008234,GO:0009056,GO:0009057,GO:0009987,GO:0012501,GO:0016787,GO:0019538,GO:0030163,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0051603,GO:0070011,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575
Evalue7.59e-62
EggNOG OGsKOG1546@1|root,KOG1546@2759|Eukaryota,38EI0@33154|Opisthokonta,3NW3X@4751|Fungi,1GV2T@112252|Fungi incertae sedis
DescriptionMortierella verticillata NRRL 6337
COG categoryDO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12389Gvermi12389Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4466506..4467993 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12389.t1.start1Gvermi12389.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4466506..4466508 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12389.t1.CDS1Gvermi12389.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4466506..4467993 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12389.t1.exon1Gvermi12389.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4466506..4467993 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12389.t1.stop1Gvermi12389.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4467991..4467993 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12389.t1Gvermi12389.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4466506..4467993 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12389.t1 ID=Gvermi12389.t1|Name=Gvermi12389.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=496bp
MLPSSRPSLRTSASVSNPGVLHDFSPRPDYRLANPNRLLPDGLSMPSFPP
PPPPFYSFYPTGPYPSPPIAALHHPTPNMPPPYQQPPNHPYHPPPPQYQY
ASPVPAQFAHQSYRPIEPPHHHQPQPHLQQQQHHHYQPTPPPHQSYSTAR
SFRPPQHARSSASSSAHAAPRYYSDPHAPAVSSFRPSGRKRAVLIGINYV
GTRDELRGCVRDVTFVHHLLKHRFNFRDRDFVVLTDVETNIPNVRKGRPD
RRTILSSLKWLVDSSTPGESLWFSFSGHGSQVLDTSGDESDGYDETLLPV
DYKVAGPIIDDELFKIVKRVARGARLTVLLDACHSGTGLDLPYQHDVFGA
NTGQKVSSGGRPMSLTTGLFNLTSHIITGNPTAALQTGLHLMNRRKKPKP
PQGPDPNAGEVLLFAGCKDNQTAADTSKFAKGLTTGAMTYALIEAVEHST
VGDWRNYNYRKLLQTMRQKLRGNQMSQTPQFSTSHPFDLSSPFVL*
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spliced messenger RNA

>Gvermi12389.t1 ID=Gvermi12389.t1|Name=Gvermi12389.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1488bp|location=Sequence derived from alignment at ScGOVlb_3404:4466506..4467993+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTACCCTCTTCTCGCCCGTCCCTGCGCACCAGCGCGTCCGTGTCGAA
TCCCGGCGTGCTTCACGACTTCTCGCCACGCCCCGACTACCGTCTCGCCA
ACCCCAACCGACTGCTGCCCGACGGCCTCTCAATGCCCTCCTTCCCCCCC
CCCCCACCCCCCTTCTACTCCTTCTACCCCACCGGCCCGTACCCCTCCCC
CCCCATCGCCGCGCTTCACCACCCCACCCCCAACATGCCGCCGCCGTACC
AGCAACCCCCCAACCACCCTTACCACCCCCCTCCCCCTCAATACCAATAC
GCGTCACCCGTGCCCGCCCAGTTCGCGCATCAAAGCTACCGCCCCATCGA
GCCTCCGcaccaccaccagccccaaccgcacttacagcaacaacagcacc
accactaccagccgaccccccccccgcaccaGTCGTACTCCACCGCGCGC
AGCTTCCGCCCCCCCCAGCACGCGCGCTCCTCCGCGTCGTCGTCCGCCCA
CGCCGCCCCGCGCTACTACTCCGACCCGCACGCCCCCGCCGTCAGCTCCT
TCCGCCCCAGCGGCCGCAAGCGCGCCGTGCTCATCGGCATCAACTACGTT
GGCACCCGCGACGAGCTGCGCGGCTGCGTGCGCGACGTCACCTTCGTGCA
CCACCTACTCAAGCACCGCTTCAACTTTCGCGACCGTGACTTTGTCGTCC
TCACCGACGTTGAGACGAACATCCCCAACGTGCGCAAGGGAAGGCCTGAC
CGCCGCACCATTCTCTCGTCGCTCAAGTGGCTCGTCGACAGCTCCACCCC
GGGCGAGTCGCTGTGGTTTTCGTTCTCGGGCCACGGCTCGCAGGTGCTGG
ACACCAGCGGCGACGAGAGTGACGGCTACGACGAGACGCTGCTGCCCGTC
GACTACAAGGTTGCCGGGCCCATCATCGACGACGAACTTTTCAAAATCGT
GAAAAGGGTCGCCCGCGGCGCGCGCCTCACCGTCTTGTTGGACGCCTGCC
ATTCCGGCACCGGCCTGGATCTCCCCTACCAACATGACGTCTTTGGCGCC
AACACCGGGCAGAAGGTCAGCTCGGGCGGACGCCCGATGAGCCTCACCAC
CGGCCTTTTCAACCTCACTAGCCACATTATCACCGGCAACCCCACGGCCG
CCCTGCAGACCGGTCTCCATCTCATGAACCGCAGGAAGAAGCCCAAGCCG
CCACAGGGGCCGGACCCCAACGCCGGCGAGGTTCTGCTCTTCGCCGGTTG
TAAGGATAACCAGACGGCCGCCGACACCTCCAAGTTTGCAAAGGGGCTTA
CAACGGGCGCCATGACTTATGCGCTCATTGAAGCTGTTGAACACTCTACC
GTGGGCGACTGGCGCAACTACAACTATCGCAAGCTGCTTCAAACCATGAG
GCAAAAACTGCGCGGGAATCAGATGTCGCAAACGCCCCAGTTTTCTACGT
CTCATCCGTTTGACTTGTCTTCCCCTTTTGTTCTGTAG
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protein sequence of Gvermi12389.t1

>Gvermi12389.t1 ID=Gvermi12389.t1|Name=Gvermi12389.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=496bp
MLPSSRPSLRTSASVSNPGVLHDFSPRPDYRLANPNRLLPDGLSMPSFPP
PPPPFYSFYPTGPYPSPPIAALHHPTPNMPPPYQQPPNHPYHPPPPQYQY
ASPVPAQFAHQSYRPIEPPHHHQPQPHLQQQQHHHYQPTPPPHQSYSTAR
SFRPPQHARSSASSSAHAAPRYYSDPHAPAVSSFRPSGRKRAVLIGINYV
GTRDELRGCVRDVTFVHHLLKHRFNFRDRDFVVLTDVETNIPNVRKGRPD
RRTILSSLKWLVDSSTPGESLWFSFSGHGSQVLDTSGDESDGYDETLLPV
DYKVAGPIIDDELFKIVKRVARGARLTVLLDACHSGTGLDLPYQHDVFGA
NTGQKVSSGGRPMSLTTGLFNLTSHIITGNPTAALQTGLHLMNRRKKPKP
PQGPDPNAGEVLLFAGCKDNQTAADTSKFAKGLTTGAMTYALIEAVEHST
VGDWRNYNYRKLLQTMRQKLRGNQMSQTPQFSTSHPFDLSSPFVL*
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mRNA from alignment at ScGOVlb_3404:4466506..4467993+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12389.t1 ID=Gvermi12389.t1|Name=Gvermi12389.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1488bp|location=Sequence derived from alignment at ScGOVlb_3404:4466506..4467993+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTACCCTCTTCTCGCCCGTCCCTGCGCACCAGCGCGTCCGTGTCGAA
TCCCGGCGTGCTTCACGACTTCTCGCCACGCCCCGACTACCGTCTCGCCA
ACCCCAACCGACTGCTGCCCGACGGCCTCTCAATGCCCTCCTTCCCCCCC
CCCCCACCCCCCTTCTACTCCTTCTACCCCACCGGCCCGTACCCCTCCCC
CCCCATCGCCGCGCTTCACCACCCCACCCCCAACATGCCGCCGCCGTACC
AGCAACCCCCCAACCACCCTTACCACCCCCCTCCCCCTCAATACCAATAC
GCGTCACCCGTGCCCGCCCAGTTCGCGCATCAAAGCTACCGCCCCATCGA
GCCTCCGcaccaccaccagccccaaccgcacttacagcaacaacagcacc
accactaccagccgaccccccccccgcaccaGTCGTACTCCACCGCGCGC
AGCTTCCGCCCCCCCCAGCACGCGCGCTCCTCCGCGTCGTCGTCCGCCCA
CGCCGCCCCGCGCTACTACTCCGACCCGCACGCCCCCGCCGTCAGCTCCT
TCCGCCCCAGCGGCCGCAAGCGCGCCGTGCTCATCGGCATCAACTACGTT
GGCACCCGCGACGAGCTGCGCGGCTGCGTGCGCGACGTCACCTTCGTGCA
CCACCTACTCAAGCACCGCTTCAACTTTCGCGACCGTGACTTTGTCGTCC
TCACCGACGTTGAGACGAACATCCCCAACGTGCGCAAGGGAAGGCCTGAC
CGCCGCACCATTCTCTCGTCGCTCAAGTGGCTCGTCGACAGCTCCACCCC
GGGCGAGTCGCTGTGGTTTTCGTTCTCGGGCCACGGCTCGCAGGTGCTGG
ACACCAGCGGCGACGAGAGTGACGGCTACGACGAGACGCTGCTGCCCGTC
GACTACAAGGTTGCCGGGCCCATCATCGACGACGAACTTTTCAAAATCGT
GAAAAGGGTCGCCCGCGGCGCGCGCCTCACCGTCTTGTTGGACGCCTGCC
ATTCCGGCACCGGCCTGGATCTCCCCTACCAACATGACGTCTTTGGCGCC
AACACCGGGCAGAAGGTCAGCTCGGGCGGACGCCCGATGAGCCTCACCAC
CGGCCTTTTCAACCTCACTAGCCACATTATCACCGGCAACCCCACGGCCG
CCCTGCAGACCGGTCTCCATCTCATGAACCGCAGGAAGAAGCCCAAGCCG
CCACAGGGGCCGGACCCCAACGCCGGCGAGGTTCTGCTCTTCGCCGGTTG
TAAGGATAACCAGACGGCCGCCGACACCTCCAAGTTTGCAAAGGGGCTTA
CAACGGGCGCCATGACTTATGCGCTCATTGAAGCTGTTGAACACTCTACC
GTGGGCGACTGGCGCAACTACAACTATCGCAAGCTGCTTCAAACCATGAG
GCAAAAACTGCGCGGGAATCAGATGTCGCAAACGCCCCAGTTTTCTACGT
CTCATCCGTTTGACTTGTCTTCCCCTTTTGTTCTGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4466506..4467993+

>Gvermi12389.t1 ID=Gvermi12389.t1|Name=Gvermi12389.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1488bp|location=Sequence derived from alignment at ScGOVlb_3404:4466506..4467993+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTACCCTCTTCTCGCCCGTCCCTGCGCACCAGCGCGTCCGTGTCGAA
TCCCGGCGTGCTTCACGACTTCTCGCCACGCCCCGACTACCGTCTCGCCA
ACCCCAACCGACTGCTGCCCGACGGCCTCTCAATGCCCTCCTTCCCCCCC
CCCCCACCCCCCTTCTACTCCTTCTACCCCACCGGCCCGTACCCCTCCCC
CCCCATCGCCGCGCTTCACCACCCCACCCCCAACATGCCGCCGCCGTACC
AGCAACCCCCCAACCACCCTTACCACCCCCCTCCCCCTCAATACCAATAC
GCGTCACCCGTGCCCGCCCAGTTCGCGCATCAAAGCTACCGCCCCATCGA
GCCTCCGcaccaccaccagccccaaccgcacttacagcaacaacagcacc
accactaccagccgaccccccccccgcaccaGTCGTACTCCACCGCGCGC
AGCTTCCGCCCCCCCCAGCACGCGCGCTCCTCCGCGTCGTCGTCCGCCCA
CGCCGCCCCGCGCTACTACTCCGACCCGCACGCCCCCGCCGTCAGCTCCT
TCCGCCCCAGCGGCCGCAAGCGCGCCGTGCTCATCGGCATCAACTACGTT
GGCACCCGCGACGAGCTGCGCGGCTGCGTGCGCGACGTCACCTTCGTGCA
CCACCTACTCAAGCACCGCTTCAACTTTCGCGACCGTGACTTTGTCGTCC
TCACCGACGTTGAGACGAACATCCCCAACGTGCGCAAGGGAAGGCCTGAC
CGCCGCACCATTCTCTCGTCGCTCAAGTGGCTCGTCGACAGCTCCACCCC
GGGCGAGTCGCTGTGGTTTTCGTTCTCGGGCCACGGCTCGCAGGTGCTGG
ACACCAGCGGCGACGAGAGTGACGGCTACGACGAGACGCTGCTGCCCGTC
GACTACAAGGTTGCCGGGCCCATCATCGACGACGAACTTTTCAAAATCGT
GAAAAGGGTCGCCCGCGGCGCGCGCCTCACCGTCTTGTTGGACGCCTGCC
ATTCCGGCACCGGCCTGGATCTCCCCTACCAACATGACGTCTTTGGCGCC
AACACCGGGCAGAAGGTCAGCTCGGGCGGACGCCCGATGAGCCTCACCAC
CGGCCTTTTCAACCTCACTAGCCACATTATCACCGGCAACCCCACGGCCG
CCCTGCAGACCGGTCTCCATCTCATGAACCGCAGGAAGAAGCCCAAGCCG
CCACAGGGGCCGGACCCCAACGCCGGCGAGGTTCTGCTCTTCGCCGGTTG
TAAGGATAACCAGACGGCCGCCGACACCTCCAAGTTTGCAAAGGGGCTTA
CAACGGGCGCCATGACTTATGCGCTCATTGAAGCTGTTGAACACTCTACC
GTGGGCGACTGGCGCAACTACAACTATCGCAAGCTGCTTCAAACCATGAG
GCAAAAACTGCGCGGGAATCAGATGTCGCAAACGCCCCAGTTTTCTACGT
CTCATCCGTTTGACTTGTCTTCCCCTTTTGTTCTGTAG
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