Gvermi12385.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12385.t1
Unique NameGvermi12385.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length212
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4461075..4461710 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog10224.XP_006813234.1
Preferred nameWDSUB1
PFAMsSAM_1,SAM_2,U-box,WD40
Max annot lvl33208|Metazoa
Evalue5.88e-08
EggNOG OGsKOG4155@1|root,KOG4155@2759|Eukaryota,38F9N@33154|Opisthokonta,3BHBH@33208|Metazoa
Descriptionubiquitin-protein transferase activity
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12385Gvermi12385Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4461075..4461710 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12385.t1.start1Gvermi12385.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4461075..4461077 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12385.t1.CDS1Gvermi12385.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4461075..4461710 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12385.t1.exon1Gvermi12385.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4461075..4461710 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12385.t1.stop1Gvermi12385.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4461708..4461710 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12385.t1Gvermi12385.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4461075..4461710 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12385.t1 ID=Gvermi12385.t1|Name=Gvermi12385.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=212bp
MPAPHPYPLPSVLAQAAGGTTVSKVSTVADVQKWITDLGFSQYAQDFLSN
EVDGEILKTLTSEELRDDLLVTNLRHRREILAAVNRLLQEEVAPAVQKLP
EHGRILDHLSNVRTYHSWIRVGIQFLGFAVVTLRLSPNFRNSHLITASSL
YFAAIGIAALIYGVYRYKVVIDMIESSGPSTNNFSPDRMGVVFMLILAFA
AFVLTLTILAL*
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spliced messenger RNA

>Gvermi12385.t1 ID=Gvermi12385.t1|Name=Gvermi12385.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=636bp|location=Sequence derived from alignment at ScGOVlb_3404:4461075..4461710+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTGCGCCGCACCCATACCCATTGCCGAGCGTTCTCGCACAAGCCGC
GGGGGGCACCACAGTTTCGAAAGTGTCCACCGTCGCAGATGTCCAAAAGT
GGATAACTGACCTCGGCTTCTCTCAATACGCCCAAGACTTCCTCTCTAAC
GAAGTCGACGGCGAAATTCTCAAAACTCTCACATCAGAAGAGCTGCGAGA
TGATTTACTCGTGACCAACCTCCGCCACCGACGCGAGATTCTTGCCGCCG
TCAACCGTCTGCTCCAGGAGGAGGTCGCTCCTGCCGTGCAGAAACTTCCC
GAGCACGGTCGCATCTTAGACCATCTGTCCAATGTTCGCACCTATCACAG
CTGGATACGCGTTGGCATTCAGTTTCTTGGCTTCGCCGTCGTAACCCTCA
GGCTCTCACCAAATTTTCGTAATTCGCATCTTATCACCGCCTCCTCCTTG
TACTTCGCTGCCATAGGCATTGCGGCCTTAATTTACGGTGTGTATCGCTA
CAAAGTTGTTATTGACATGATCGAGTCATCTGGTCCTTCCACCAATAACT
TCAGTCCAGACCGAATGGGCGTTGTCTTCATGCTCATCTTGGCATTCGCA
GCTTTTGTCCTGACACTCACAATACTTGCTTTATGA
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protein sequence of Gvermi12385.t1

>Gvermi12385.t1 ID=Gvermi12385.t1|Name=Gvermi12385.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=212bp
MPAPHPYPLPSVLAQAAGGTTVSKVSTVADVQKWITDLGFSQYAQDFLSN
EVDGEILKTLTSEELRDDLLVTNLRHRREILAAVNRLLQEEVAPAVQKLP
EHGRILDHLSNVRTYHSWIRVGIQFLGFAVVTLRLSPNFRNSHLITASSL
YFAAIGIAALIYGVYRYKVVIDMIESSGPSTNNFSPDRMGVVFMLILAFA
AFVLTLTILAL*
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mRNA from alignment at ScGOVlb_3404:4461075..4461710+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12385.t1 ID=Gvermi12385.t1|Name=Gvermi12385.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=636bp|location=Sequence derived from alignment at ScGOVlb_3404:4461075..4461710+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCTGCGCCGCACCCATACCCATTGCCGAGCGTTCTCGCACAAGCCGC
GGGGGGCACCACAGTTTCGAAAGTGTCCACCGTCGCAGATGTCCAAAAGT
GGATAACTGACCTCGGCTTCTCTCAATACGCCCAAGACTTCCTCTCTAAC
GAAGTCGACGGCGAAATTCTCAAAACTCTCACATCAGAAGAGCTGCGAGA
TGATTTACTCGTGACCAACCTCCGCCACCGACGCGAGATTCTTGCCGCCG
TCAACCGTCTGCTCCAGGAGGAGGTCGCTCCTGCCGTGCAGAAACTTCCC
GAGCACGGTCGCATCTTAGACCATCTGTCCAATGTTCGCACCTATCACAG
CTGGATACGCGTTGGCATTCAGTTTCTTGGCTTCGCCGTCGTAACCCTCA
GGCTCTCACCAAATTTTCGTAATTCGCATCTTATCACCGCCTCCTCCTTG
TACTTCGCTGCCATAGGCATTGCGGCCTTAATTTACGGTGTGTATCGCTA
CAAAGTTGTTATTGACATGATCGAGTCATCTGGTCCTTCCACCAATAACT
TCAGTCCAGACCGAATGGGCGTTGTCTTCATGCTCATCTTGGCATTCGCA
GCTTTTGTCCTGACACTCACAATACTTGCTTTATGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4461075..4461710+

>Gvermi12385.t1 ID=Gvermi12385.t1|Name=Gvermi12385.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=636bp|location=Sequence derived from alignment at ScGOVlb_3404:4461075..4461710+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCTGCGCCGCACCCATACCCATTGCCGAGCGTTCTCGCACAAGCCGC
GGGGGGCACCACAGTTTCGAAAGTGTCCACCGTCGCAGATGTCCAAAAGT
GGATAACTGACCTCGGCTTCTCTCAATACGCCCAAGACTTCCTCTCTAAC
GAAGTCGACGGCGAAATTCTCAAAACTCTCACATCAGAAGAGCTGCGAGA
TGATTTACTCGTGACCAACCTCCGCCACCGACGCGAGATTCTTGCCGCCG
TCAACCGTCTGCTCCAGGAGGAGGTCGCTCCTGCCGTGCAGAAACTTCCC
GAGCACGGTCGCATCTTAGACCATCTGTCCAATGTTCGCACCTATCACAG
CTGGATACGCGTTGGCATTCAGTTTCTTGGCTTCGCCGTCGTAACCCTCA
GGCTCTCACCAAATTTTCGTAATTCGCATCTTATCACCGCCTCCTCCTTG
TACTTCGCTGCCATAGGCATTGCGGCCTTAATTTACGGTGTGTATCGCTA
CAAAGTTGTTATTGACATGATCGAGTCATCTGGTCCTTCCACCAATAACT
TCAGTCCAGACCGAATGGGCGTTGTCTTCATGCTCATCTTGGCATTCGCA
GCTTTTGTCCTGACACTCACAATACTTGCTTTATGA
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