Gvermi12384.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12384.t1
Unique NameGvermi12384.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length541
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4458827..4460553 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704290.1
Preferred nameATPB
PFAMsATP-synt_ab,ATP-synt_ab_N,Synthase_beta
Max annot lvl2759|Eukaryota
KEGG koko:K02133
KEGG TC3.A.2.1
KEGG Pathwayko00190,ko01100,ko04714,ko05010,ko05012,ko05016,map00190,map01100,map04714,map05010,map05012,map05016
KEGG ModuleM00158
GOsGO:0000166,GO:0000275,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0005488,GO:0005507,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0005753,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008144,GO:0008150,GO:0008152,GO:0008187,GO:0008266,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009507,GO:0009526,GO:0009536,GO:0009941,GO:0009987,GO:0010035,GO:0010038,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016469,GO:0017076,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019866,GO:0030554,GO:0030964,GO:0031090,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033178,GO:0034220,GO:0034641,GO:0034654,GO:0035639,GO:0036094,GO:0042221,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045259,GO:0045261,GO:0045271,GO:0046034,GO:0046390,GO:0046483,GO:0046686,GO:0046872,GO:0046914,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0070013,GO:0070469,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0097159,GO:0097367,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1902600,GO:1990204
Evalue1.72e-274
EggNOG OGsCOG0055@1|root,KOG1350@2759|Eukaryota
EC3.6.3.14
Descriptionproton-transporting ATP synthase activity, rotational mechanism
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12384Gvermi12384Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4458827..4460553 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12384.t1Gvermi12384.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4458827..4460553 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12384.t1.stop1Gvermi12384.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4458827..4458829 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12384.t1.CDS1Gvermi12384.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4458827..4460199 -
Gvermi12384.t1.CDS2Gvermi12384.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4460304..4460553 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12384.t1.exon1Gvermi12384.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4458827..4460199 -
Gvermi12384.t1.exon2Gvermi12384.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4460304..4460553 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12384.t1.intron1Gvermi12384.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 4460200..4460303 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12384.t1.start1Gvermi12384.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4460551..4460553 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12384.t1 ID=Gvermi12384.t1|Name=Gvermi12384.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=541bp
MLRLATTAGRAASRAVRLLPRSASPAAATAARRLAHAALAPTAPTAVKAS
TAAPAAAETDASPAALPAGKISQVIGAVVDVHFESGSLPPILNALEVKDH
DIRLVLEVAQHLGESTVRTIAMDATEGLVRGQAVVDTGNPIMVPVGRETL
GRIINVIGEPIDERGPVKTDKFYPIHREAPEFTDQDTTASILQTGIKVVD
LLAPYARGGKIGLFGGAGVGKTVFIMELINNIAKAHGGYSVFTGVGERTR
EGNDLYHEMIVSGVIKLDSDESKAALVYGQMNEPPGARARVGLTGLAIAE
YFRDEEGQDVLLFVDNIFRFTQANAEVSALLGRIPSAVGYQPTLATDLGA
LQERITTTRLGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQIAE
LGIYPAVDPLDSTSRMLSPLILGEEHYGVARSVQEILQSYKQLTDIIAIL
GMDELSEDDKLTVARARKVQRFLSQPFHVAEVFTGIDGRFVETEKTLAGF
KDLVAGSFDDLPENAFYMVGDIDEVVSNARKMAADVEEAA*
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spliced messenger RNA

>Gvermi12384.t1 ID=Gvermi12384.t1|Name=Gvermi12384.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1623bp|location=Sequence derived from alignment at ScGOVlb_3404:4458827..4460553- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGAGACTCGCCACAACCGCCGGTCGCGCCGCCTCGCGCGCTGTGCG
CCTCCTCCCGCGATCCGCCTCGCCCGCCGCCGCGACTGCGGCGCGCCGCC
TCGCGCATGCGGCCTTGGCGCCCACGGCTCCCACCGCCGTCAAGGCCTCT
ACTGCCGCTCCCGCGGCGGCCGAAACCGATGCCTCTCCGGCTGCGCTTCC
CGCCGGCAAGATTTCTCAGGTCATCGGTGCCGTTGTGGATGTTCATTTCG
AATCTGGATCCTTGCCGCCAATTCTGAATGCGTTGGAGGTCAAGGACCAT
GACATCCGCCTTGTGTTGGAGGTTGCTCAGCATTTGGGAGAGAGCACCGT
GCGTACCATTGCCATGGATGCCACCGAAGGTCTCGTCCGCGGCCAGGCCG
TCGTAGATACCGGAAACCCCATTATGGTTCCCGTCGGTCGTGAGACTCTC
GGTCGCATCATTAATGTTATCGGCGAGCCCATTGATGAGCGCGGCCCGGT
GAAGACCGACAAATTCTATCCGATCCATCGCGAAGCCCCAGAGTTCACTG
ATCAGGACACCACCGCTTCCATTCTGCAGACTGGTATCAAGGTTGTCGAT
TTGCTAGCACCGTACGCTCGTGGCGGTAAGATTGGTCTCTTCGGTGGTGC
TGGCGTAGGAAAGACTGTCTTTATTATGGAACTCATCAACAACATTGCAA
AAGCACACGGTGGTTATTCCGTCTTCACTGGTGTCGGTGAGCGTACCCGT
GAGGGTAATGATCTGTACCATGAAATGATTGTATCTGGCGTTATCAAACT
CGACAGTGATGAATCCAAGGCCGCTCTTGTGTACGGGCAGATGAACGAGC
CTCCAGGTGCCCGTGCCCGTGTGGGTCTCACCGGTCTTGCTATTGCCGAG
TATTTCCGTGATGAAGAGGGTCAGGATGTGCTTCTCTTCGTCGACAATAT
CTTCCGCTTTACACAAGCCAACGCTGAGGTGTCTGCGCTTCTTGGACGTA
TCCCGTCTGCTGTCGGATACCAACCGACCCTTGCCACTGATCTTGGTGCT
CTGCAAGAACGTATCACCACCACCCGTCTCGGATCCATTACATCTGTACA
AGCCATCTACGTGCCAGCAGATGATCTCACAGATCCGGCCCCGGCTACCA
CTTTTGCGCATCTTGACGCCACCACTGTGCTTTCTCGTCAGATTGCCGAG
CTTGGCATTTACCCAGCTGTCGATCCGCTCGACTCCACCTCTCGAATGCT
TTCGCCTCTCATCCTCGGAGAAGAGCACTATGGCGTTGCGCGTTCCGTGC
AGGAGATTCTTCAATCATACAAGCAGCTTACTGATATTATTGCCATCCTT
GGTATGGACGAGCTCAGCGAAGATGATAAGCTTACGGTTGCTCGTGCGCG
GAAGGTGCAACGTTTCCTGTCCCAGCCATTCCACGTTGCAGAAGTGTTTA
CTGGCATCGATGGCCGCTTTGTCGAAACTGAGAAGACACTGGCTGGATTC
AAGGACCTTGTTGCTGGCAGCTTCGACGATCTGCCAGAGAACGCTTTCTA
TATGGTTGGTGACATTGACGAGGTTGTTTCAAATGCCCGTAAGATGGCAG
CAGATGTGGAAGAAGCCGCGTAG
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protein sequence of Gvermi12384.t1

>Gvermi12384.t1 ID=Gvermi12384.t1|Name=Gvermi12384.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=541bp
MLRLATTAGRAASRAVRLLPRSASPAAATAARRLAHAALAPTAPTAVKAS
TAAPAAAETDASPAALPAGKISQVIGAVVDVHFESGSLPPILNALEVKDH
DIRLVLEVAQHLGESTVRTIAMDATEGLVRGQAVVDTGNPIMVPVGRETL
GRIINVIGEPIDERGPVKTDKFYPIHREAPEFTDQDTTASILQTGIKVVD
LLAPYARGGKIGLFGGAGVGKTVFIMELINNIAKAHGGYSVFTGVGERTR
EGNDLYHEMIVSGVIKLDSDESKAALVYGQMNEPPGARARVGLTGLAIAE
YFRDEEGQDVLLFVDNIFRFTQANAEVSALLGRIPSAVGYQPTLATDLGA
LQERITTTRLGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQIAE
LGIYPAVDPLDSTSRMLSPLILGEEHYGVARSVQEILQSYKQLTDIIAIL
GMDELSEDDKLTVARARKVQRFLSQPFHVAEVFTGIDGRFVETEKTLAGF
KDLVAGSFDDLPENAFYMVGDIDEVVSNARKMAADVEEAA*
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mRNA from alignment at ScGOVlb_3404:4458827..4460553-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12384.t1 ID=Gvermi12384.t1|Name=Gvermi12384.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1727bp|location=Sequence derived from alignment at ScGOVlb_3404:4458827..4460553- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTGAGACTCGCCACAACCGCCGGTCGCGCCGCCTCGCGCGCTGTGCG
CCTCCTCCCGCGATCCGCCTCGCCCGCCGCCGCGACTGCGGCGCGCCGCC
TCGCGCATGCGGCCTTGGCGCCCACGGCTCCCACCGCCGTCAAGGCCTCT
ACTGCCGCTCCCGCGGCGGCCGAAACCGATGCCTCTCCGGCTGCGCTTCC
CGCCGGCAAGATTTCTCAGGTCATCGGTGCCGTTGTGGATGTTCATTTCG
GTTCGTTCCACCGCCCTCTACCGTTCCTCGCGTGCATTTTTCTCGTTCGC
TGACCGTCATTTCGCCGCCATTCCCTCCAATTCCATCCGATTTCCTTTGC
ATAGAATCTGGATCCTTGCCGCCAATTCTGAATGCGTTGGAGGTCAAGGA
CCATGACATCCGCCTTGTGTTGGAGGTTGCTCAGCATTTGGGAGAGAGCA
CCGTGCGTACCATTGCCATGGATGCCACCGAAGGTCTCGTCCGCGGCCAG
GCCGTCGTAGATACCGGAAACCCCATTATGGTTCCCGTCGGTCGTGAGAC
TCTCGGTCGCATCATTAATGTTATCGGCGAGCCCATTGATGAGCGCGGCC
CGGTGAAGACCGACAAATTCTATCCGATCCATCGCGAAGCCCCAGAGTTC
ACTGATCAGGACACCACCGCTTCCATTCTGCAGACTGGTATCAAGGTTGT
CGATTTGCTAGCACCGTACGCTCGTGGCGGTAAGATTGGTCTCTTCGGTG
GTGCTGGCGTAGGAAAGACTGTCTTTATTATGGAACTCATCAACAACATT
GCAAAAGCACACGGTGGTTATTCCGTCTTCACTGGTGTCGGTGAGCGTAC
CCGTGAGGGTAATGATCTGTACCATGAAATGATTGTATCTGGCGTTATCA
AACTCGACAGTGATGAATCCAAGGCCGCTCTTGTGTACGGGCAGATGAAC
GAGCCTCCAGGTGCCCGTGCCCGTGTGGGTCTCACCGGTCTTGCTATTGC
CGAGTATTTCCGTGATGAAGAGGGTCAGGATGTGCTTCTCTTCGTCGACA
ATATCTTCCGCTTTACACAAGCCAACGCTGAGGTGTCTGCGCTTCTTGGA
CGTATCCCGTCTGCTGTCGGATACCAACCGACCCTTGCCACTGATCTTGG
TGCTCTGCAAGAACGTATCACCACCACCCGTCTCGGATCCATTACATCTG
TACAAGCCATCTACGTGCCAGCAGATGATCTCACAGATCCGGCCCCGGCT
ACCACTTTTGCGCATCTTGACGCCACCACTGTGCTTTCTCGTCAGATTGC
CGAGCTTGGCATTTACCCAGCTGTCGATCCGCTCGACTCCACCTCTCGAA
TGCTTTCGCCTCTCATCCTCGGAGAAGAGCACTATGGCGTTGCGCGTTCC
GTGCAGGAGATTCTTCAATCATACAAGCAGCTTACTGATATTATTGCCAT
CCTTGGTATGGACGAGCTCAGCGAAGATGATAAGCTTACGGTTGCTCGTG
CGCGGAAGGTGCAACGTTTCCTGTCCCAGCCATTCCACGTTGCAGAAGTG
TTTACTGGCATCGATGGCCGCTTTGTCGAAACTGAGAAGACACTGGCTGG
ATTCAAGGACCTTGTTGCTGGCAGCTTCGACGATCTGCCAGAGAACGCTT
TCTATATGGTTGGTGACATTGACGAGGTTGTTTCAAATGCCCGTAAGATG
GCAGCAGATGTGGAAGAAGCCGCGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4458827..4460553-

>Gvermi12384.t1 ID=Gvermi12384.t1|Name=Gvermi12384.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1623bp|location=Sequence derived from alignment at ScGOVlb_3404:4458827..4460553- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTGAGACTCGCCACAACCGCCGGTCGCGCCGCCTCGCGCGCTGTGCG
CCTCCTCCCGCGATCCGCCTCGCCCGCCGCCGCGACTGCGGCGCGCCGCC
TCGCGCATGCGGCCTTGGCGCCCACGGCTCCCACCGCCGTCAAGGCCTCT
ACTGCCGCTCCCGCGGCGGCCGAAACCGATGCCTCTCCGGCTGCGCTTCC
CGCCGGCAAGATTTCTCAGGTCATCGGTGCCGTTGTGGATGTTCATTTCG
AATCTGGATCCTTGCCGCCAATTCTGAATGCGTTGGAGGTCAAGGACCAT
GACATCCGCCTTGTGTTGGAGGTTGCTCAGCATTTGGGAGAGAGCACCGT
GCGTACCATTGCCATGGATGCCACCGAAGGTCTCGTCCGCGGCCAGGCCG
TCGTAGATACCGGAAACCCCATTATGGTTCCCGTCGGTCGTGAGACTCTC
GGTCGCATCATTAATGTTATCGGCGAGCCCATTGATGAGCGCGGCCCGGT
GAAGACCGACAAATTCTATCCGATCCATCGCGAAGCCCCAGAGTTCACTG
ATCAGGACACCACCGCTTCCATTCTGCAGACTGGTATCAAGGTTGTCGAT
TTGCTAGCACCGTACGCTCGTGGCGGTAAGATTGGTCTCTTCGGTGGTGC
TGGCGTAGGAAAGACTGTCTTTATTATGGAACTCATCAACAACATTGCAA
AAGCACACGGTGGTTATTCCGTCTTCACTGGTGTCGGTGAGCGTACCCGT
GAGGGTAATGATCTGTACCATGAAATGATTGTATCTGGCGTTATCAAACT
CGACAGTGATGAATCCAAGGCCGCTCTTGTGTACGGGCAGATGAACGAGC
CTCCAGGTGCCCGTGCCCGTGTGGGTCTCACCGGTCTTGCTATTGCCGAG
TATTTCCGTGATGAAGAGGGTCAGGATGTGCTTCTCTTCGTCGACAATAT
CTTCCGCTTTACACAAGCCAACGCTGAGGTGTCTGCGCTTCTTGGACGTA
TCCCGTCTGCTGTCGGATACCAACCGACCCTTGCCACTGATCTTGGTGCT
CTGCAAGAACGTATCACCACCACCCGTCTCGGATCCATTACATCTGTACA
AGCCATCTACGTGCCAGCAGATGATCTCACAGATCCGGCCCCGGCTACCA
CTTTTGCGCATCTTGACGCCACCACTGTGCTTTCTCGTCAGATTGCCGAG
CTTGGCATTTACCCAGCTGTCGATCCGCTCGACTCCACCTCTCGAATGCT
TTCGCCTCTCATCCTCGGAGAAGAGCACTATGGCGTTGCGCGTTCCGTGC
AGGAGATTCTTCAATCATACAAGCAGCTTACTGATATTATTGCCATCCTT
GGTATGGACGAGCTCAGCGAAGATGATAAGCTTACGGTTGCTCGTGCGCG
GAAGGTGCAACGTTTCCTGTCCCAGCCATTCCACGTTGCAGAAGTGTTTA
CTGGCATCGATGGCCGCTTTGTCGAAACTGAGAAGACACTGGCTGGATTC
AAGGACCTTGTTGCTGGCAGCTTCGACGATCTGCCAGAGAACGCTTTCTA
TATGGTTGGTGACATTGACGAGGTTGTTTCAAATGCCCGTAAGATGGCAG
CAGATGTGGAAGAAGCCGCGTAG
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