Gvermi12381.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12381.t1
Unique NameGvermi12381.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length122
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4442507..4442941 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707473.1
PFAMsPrefoldin_2
Max annot lvl2759|Eukaryota
KEGG koko:K09549
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006457,GO:0008150,GO:0009987,GO:0010638,GO:0033043,GO:0044183,GO:0044424,GO:0044464,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051493,GO:0051495,GO:0065007
Evalue3.23e-18
EggNOG OGsKOG4098@1|root,KOG4098@2759|Eukaryota
Descriptionprotein binding involved in protein folding
COG categoryQ
BRITEko00000,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12381Gvermi12381Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4442507..4442941 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12381.t1Gvermi12381.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4442507..4442941 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12381.t1.start1Gvermi12381.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4442507..4442509 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12381.t1.CDS1Gvermi12381.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4442507..4442755 +
Gvermi12381.t1.CDS2Gvermi12381.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4442825..4442941 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12381.t1.exon1Gvermi12381.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4442507..4442755 +
Gvermi12381.t1.exon2Gvermi12381.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4442825..4442941 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12381.t1.intron1Gvermi12381.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 4442756..4442824 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12381.t1.stop1Gvermi12381.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4442939..4442941 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12381.t1 ID=Gvermi12381.t1|Name=Gvermi12381.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=122bp
MAASISPQQQKQILTQYQQLREQIDRNYAKLAQLNTDRNEHELVISQLQD
LDASTRCWHQIGAVLAEKNVSQVVPVLTLTRDKLAETVRQLSDSISDLEQ
KAQQLQTKYSIREASPHSVPR*
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spliced messenger RNA

>Gvermi12381.t1 ID=Gvermi12381.t1|Name=Gvermi12381.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=366bp|location=Sequence derived from alignment at ScGOVlb_3404:4442507..4442941+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGCCTCCATCTCCCCACAACAGCAGAAACAAATCCTCACTCAGTA
CCAACAACTTCGCGAACAAATCGACCGCAATTATGCAAAGCTCGCCCAGC
TCAACACCGATCGCAACGAGCACGAACTAGTCATCTCGCAGTTGCAAGAT
CTTGACGCCTCCACTCGGTGCTGGCATCAGATAGGCGCCGTGCTCGCTGA
GAAGAACGTCTCGCAGGTCGTCCCCGTTCTCACGCTCACCAGAGACAAGC
TTGCTGAGACTGTCCGACAGCTTTCTGATAGTATCTCCGACTTGGAGCAA
AAGGCCCAACAGTTGCAGACAAAGTACTCGATACGAGAGGCCTCGCCGCA
TTCTGTTCCGCGCTGA
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protein sequence of Gvermi12381.t1

>Gvermi12381.t1 ID=Gvermi12381.t1|Name=Gvermi12381.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=122bp
MAASISPQQQKQILTQYQQLREQIDRNYAKLAQLNTDRNEHELVISQLQD
LDASTRCWHQIGAVLAEKNVSQVVPVLTLTRDKLAETVRQLSDSISDLEQ
KAQQLQTKYSIREASPHSVPR*
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mRNA from alignment at ScGOVlb_3404:4442507..4442941+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12381.t1 ID=Gvermi12381.t1|Name=Gvermi12381.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=435bp|location=Sequence derived from alignment at ScGOVlb_3404:4442507..4442941+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCGCCTCCATCTCCCCACAACAGCAGAAACAAATCCTCACTCAGTA
CCAACAACTTCGCGAACAAATCGACCGCAATTATGCAAAGCTCGCCCAGC
TCAACACCGATCGCAACGAGCACGAACTAGTCATCTCGCAGTTGCAAGAT
CTTGACGCCTCCACTCGGTGCTGGCATCAGATAGGCGCCGTGCTCGCTGA
GAAGAACGTCTCGCAGGTCGTCCCCGTTCTCACGCTCACCAGAGACAAGG
TTTGTTCCCCCTTCTCCCCCGCGTCCTTCTTCTTGCTTGCCTGCCTTGCT
CACCAATCTTTTTCGTAGCTTGCTGAGACTGTCCGACAGCTTTCTGATAG
TATCTCCGACTTGGAGCAAAAGGCCCAACAGTTGCAGACAAAGTACTCGA
TACGAGAGGCCTCGCCGCATTCTGTTCCGCGCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4442507..4442941+

>Gvermi12381.t1 ID=Gvermi12381.t1|Name=Gvermi12381.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=366bp|location=Sequence derived from alignment at ScGOVlb_3404:4442507..4442941+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCGCCTCCATCTCCCCACAACAGCAGAAACAAATCCTCACTCAGTA
CCAACAACTTCGCGAACAAATCGACCGCAATTATGCAAAGCTCGCCCAGC
TCAACACCGATCGCAACGAGCACGAACTAGTCATCTCGCAGTTGCAAGAT
CTTGACGCCTCCACTCGGTGCTGGCATCAGATAGGCGCCGTGCTCGCTGA
GAAGAACGTCTCGCAGGTCGTCCCCGTTCTCACGCTCACCAGAGACAAGC
TTGCTGAGACTGTCCGACAGCTTTCTGATAGTATCTCCGACTTGGAGCAA
AAGGCCCAACAGTTGCAGACAAAGTACTCGATACGAGAGGCCTCGCCGCA
TTCTGTTCCGCGCTGA
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