Gvermi12378.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12378.t1
Unique Name	Gvermi12378.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	595

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:4435616..4437400 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005704213.1
Preferred name	MSM1
PFAMs	Anticodon_1,tRNA-synt_1g
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00055,RC00523
KEGG ko	ko:K01874
KEGG Reaction	R03659,R04773
KEGG Pathway	ko00450,ko00970,map00450,map00970
KEGG Module	M00359,M00360
GOs	GO:0000003,GO:0000166,GO:0003006,GO:0003674,GO:0003824,GO:0004812,GO:0004825,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006431,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0007275,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009791,GO:0009908,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0022414,GO:0030554,GO:0031974,GO:0032501,GO:0032502,GO:0032543,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0035670,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048367,GO:0048437,GO:0048438,GO:0048440,GO:0048467,GO:0048481,GO:0048608,GO:0048731,GO:0048827,GO:0048856,GO:0061458,GO:0070013,GO:0071704,GO:0090304,GO:0090567,GO:0097159,GO:0097367,GO:0099402,GO:0140053,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576
Evalue	2.55e-193
EggNOG OGs	COG0143@1\|root,KOG0436@2759\|Eukaryota
EC	6.1.1.10
Description	methionyl-tRNA aminoacylation
COG category	J
BRITE	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12378	Gvermi12378	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3404 4435616..4437400 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12378.t1.start1	Gvermi12378.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_3404 4435616..4435618 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12378.t1.CDS1	Gvermi12378.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3404 4435616..4437400 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12378.t1.exon1	Gvermi12378.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3404 4435616..4437400 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12378.t1.stop1	Gvermi12378.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_3404 4437398..4437400 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12378.t1	Gvermi12378.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3404 4435616..4437400 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3404:4435616..4437400+
coding sequence from alignment at ScGOVlb_3404:4435616..4437400+

mRNA sequence

>Gvermi12378.t1 ID=Gvermi12378.t1|Name=Gvermi12378.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=595bp
MQPAFAPALALRSALRRQPPRRLPPRRALATRPRIRACAPAAPSLTGRKL
VVSTPLYYVNAPPHMGSAYTAMAADALVRFYRMAGAHPTLVTGTDEHGEK
IAAAAAAAAAAAESPEHPASPQPFCDRVSDQFRHLWRVLQLSPHSFVRTT
SHHHQAVVRLFMERVWQNGDIYKSQYQGLYCTGCEEYKDVKDLLPGNVCP
THQTPCPTRHEDNYFFALSKYQHRLQTFLERNPAFVQPPERRNEVLAWVH
AGLRDFSVSRANNPWGIPVPRDHSHTIYVWFDALVGYLSALLPHDAAAAA
AAAHPPSLDLLHTHGWPAHVHIIGKDILRFHAVYWPAMLMSAGLPLPRTV
FGHGFLTKDGMKMGKSLRNVLDPVQLVRAYGTDAVRYYFLKALHFGSDGD
FSEQRFVDVVNADLANSFGNLLNRALNLLHRHCAGALPVSAAQLGLPHAP
AHERALRLAAEHASQRAYAQYDALDFDGACQTLMAITFEANSYIDRVAPW
TKFKSRDAADVQAATTCVVNVLEACRVVAVGLNPVVPQLAQHVYHALGLA
HHYDRGLMWHHITWGALTQGMSFAKPKPVFPRLHFAAPEAAELS*

spliced messenger RNA

>Gvermi12378.t1 ID=Gvermi12378.t1|Name=Gvermi12378.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1785bp|location=Sequence derived from alignment at ScGOVlb_3404:4435616..4437400+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCCCGCGTTCGCGCCGGCGCTGGCGCTGCGATCCGCCCTGCGCCG
CCAGCCGCCCCGCCGCCTCCCGCCCCGCCGCGCCCTCGCCACGCGCCCCC
GCATCCGCGCCTGCGCCCCCGCCGCTCCCTCGCTCACCGGCCGAAAGCTC
GTCGTGTCCACCCCGCTGTACTACGTCAACGCCCCCCCGCACATGGGCTC
CGCCTACACCGCCATGGCCGCCGACGCCCTCGTGCGCTTCTACCGCATGG
CCGGCGCCCACCCCACCCTCGTCACCGGCACCGACGAGCACGGCGAGAAG
ATcgccgccgccgccgccgccgccgccgccgccgccgAGTCGCCGGAGCA
CCCCGCGTCGCCGCAGCCCTTCTGCGATCGCGTGTCGGACCAGTTCCGCC
ACCTGTGGCGCGTCCTGCAACTTTCGCCCCACTCCTTTGTGCGCACCACG
TCGCACCACCACCAGGCCGTCGTGCGCCTCTTCATGGAGCGCGTGTGGCA
GAACGGCGACATCTACAAGAGCCAGTACCAAGGCTTGTACTGCACCGGCT
GCGAGGAGTACAAGGACGTCAAAGACCTGCTCCCGGGCAACGTGTGCCCA
ACGCACCAAACGCCCTGCCCCACCCGCCACGAGGACAACTACTTCTTCGC
CCTGTCCAAGTACCAGCACCGCCTGCAAACCTTCTTGGAGCGCAACCCCG
CGTTTGTGCAGCCGCCCGAGCGCCGCAACGAGGTGCTGGCCTGGGTGCAC
GCCGGCCTGCGCGACTTTAGCGTGTCGAGGGCCAACAACCCGTGGGGCAT
CCCCGTCCCCCGTGACCACTCCCACACGATCTACGTCTGGTTTGACGCCC
TCGTCGGCTACCTCAGCGCCCTGCTCCCGCACGAcgccgccgccgccgcc
gccgccgccCACCCGCCCTCGCTCGACCTGCTGCACACCCACGGCTGGCC
GGCCCACGTCCACATCATCGGCAAGGACATTCTGCGCTTCCACGCCGTGT
ACTGGCCCGCCATGCTCATGTCGGCGGGGCTGCCGCTGCCGCGCACCGTC
TTTGGCCACGGCTTTCTCACCAAGGACGGCATGAAGATGGGCAAGAGCCT
GCGCAACGTCCTGGACCCCGTGCAGCTCGTGCGCGCCTACGGCACCGACG
CCGTGCGCTACTACTTTCTCAAGGCGCTCCACTTTGGCAGCGACGGCGAC
TTTTCCGAGCAGCGCTTTGTGGACGTCGTCAACGCCGACCTGGCCAACTC
GTTTGGCAACCTGCTCAACCGCGCGCTCAACCTGCTGCACCGCCACTGCG
CCGGCGCCCTCCCCGTCTCGGCCGCGCAGCTGGGGCTGCcgcacgccccc
gcgcacgagcgcgcgctgcgcctggccgcggagcacgccagccagcgcgc
gTACGCCCAGTACGACGCGCTCGACTTTGATGGCGCCTGCCAAACGCTCA
TGGCCATCACCTTTGAGGCCAATTCCTACATCGACCGCGTGGCGCCCTGG
ACAAAGTTCAAGTCGCGCGATGCCGCCGACGTGCAAGCCGCCACCACGTG
CGTTGTCAACGTGCTGGAGGCCTGCAGGGTGGTTGCCGTCGGCTTGAACC
CCGTCGTGCCGCAACTTGCACAGCACGTCTACCACGCCCTGGGCCTGGCC
CACCACTACGACCGCGGCCTCATGTGGCACCACATCACGTGGGGGGCACT
CACGCAGGGCATGTCGTTTGCAAAGCCCAAGCCCGTCTTTCCGCGCCTCC
ACTTTGCTGCACCCGAGGCCGCCGAGCTTTCATAG

protein sequence of Gvermi12378.t1

>Gvermi12378.t1 ID=Gvermi12378.t1|Name=Gvermi12378.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=595bp
MQPAFAPALALRSALRRQPPRRLPPRRALATRPRIRACAPAAPSLTGRKL
VVSTPLYYVNAPPHMGSAYTAMAADALVRFYRMAGAHPTLVTGTDEHGEK
IAAAAAAAAAAAESPEHPASPQPFCDRVSDQFRHLWRVLQLSPHSFVRTT
SHHHQAVVRLFMERVWQNGDIYKSQYQGLYCTGCEEYKDVKDLLPGNVCP
THQTPCPTRHEDNYFFALSKYQHRLQTFLERNPAFVQPPERRNEVLAWVH
AGLRDFSVSRANNPWGIPVPRDHSHTIYVWFDALVGYLSALLPHDAAAAA
AAAHPPSLDLLHTHGWPAHVHIIGKDILRFHAVYWPAMLMSAGLPLPRTV
FGHGFLTKDGMKMGKSLRNVLDPVQLVRAYGTDAVRYYFLKALHFGSDGD
FSEQRFVDVVNADLANSFGNLLNRALNLLHRHCAGALPVSAAQLGLPHAP
AHERALRLAAEHASQRAYAQYDALDFDGACQTLMAITFEANSYIDRVAPW
TKFKSRDAADVQAATTCVVNVLEACRVVAVGLNPVVPQLAQHVYHALGLA
HHYDRGLMWHHITWGALTQGMSFAKPKPVFPRLHFAAPEAAELS*

mRNA from alignment at ScGOVlb_3404:4435616..4437400+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12378.t1 ID=Gvermi12378.t1|Name=Gvermi12378.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1785bp|location=Sequence derived from alignment at ScGOVlb_3404:4435616..4437400+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAGCCCGCGTTCGCGCCGGCGCTGGCGCTGCGATCCGCCCTGCGCCG
CCAGCCGCCCCGCCGCCTCCCGCCCCGCCGCGCCCTCGCCACGCGCCCCC
GCATCCGCGCCTGCGCCCCCGCCGCTCCCTCGCTCACCGGCCGAAAGCTC
GTCGTGTCCACCCCGCTGTACTACGTCAACGCCCCCCCGCACATGGGCTC
CGCCTACACCGCCATGGCCGCCGACGCCCTCGTGCGCTTCTACCGCATGG
CCGGCGCCCACCCCACCCTCGTCACCGGCACCGACGAGCACGGCGAGAAG
ATcgccgccgccgccgccgccgccgccgccgccgccgAGTCGCCGGAGCA
CCCCGCGTCGCCGCAGCCCTTCTGCGATCGCGTGTCGGACCAGTTCCGCC
ACCTGTGGCGCGTCCTGCAACTTTCGCCCCACTCCTTTGTGCGCACCACG
TCGCACCACCACCAGGCCGTCGTGCGCCTCTTCATGGAGCGCGTGTGGCA
GAACGGCGACATCTACAAGAGCCAGTACCAAGGCTTGTACTGCACCGGCT
GCGAGGAGTACAAGGACGTCAAAGACCTGCTCCCGGGCAACGTGTGCCCA
ACGCACCAAACGCCCTGCCCCACCCGCCACGAGGACAACTACTTCTTCGC
CCTGTCCAAGTACCAGCACCGCCTGCAAACCTTCTTGGAGCGCAACCCCG
CGTTTGTGCAGCCGCCCGAGCGCCGCAACGAGGTGCTGGCCTGGGTGCAC
GCCGGCCTGCGCGACTTTAGCGTGTCGAGGGCCAACAACCCGTGGGGCAT
CCCCGTCCCCCGTGACCACTCCCACACGATCTACGTCTGGTTTGACGCCC
TCGTCGGCTACCTCAGCGCCCTGCTCCCGCACGAcgccgccgccgccgcc
gccgccgccCACCCGCCCTCGCTCGACCTGCTGCACACCCACGGCTGGCC
GGCCCACGTCCACATCATCGGCAAGGACATTCTGCGCTTCCACGCCGTGT
ACTGGCCCGCCATGCTCATGTCGGCGGGGCTGCCGCTGCCGCGCACCGTC
TTTGGCCACGGCTTTCTCACCAAGGACGGCATGAAGATGGGCAAGAGCCT
GCGCAACGTCCTGGACCCCGTGCAGCTCGTGCGCGCCTACGGCACCGACG
CCGTGCGCTACTACTTTCTCAAGGCGCTCCACTTTGGCAGCGACGGCGAC
TTTTCCGAGCAGCGCTTTGTGGACGTCGTCAACGCCGACCTGGCCAACTC
GTTTGGCAACCTGCTCAACCGCGCGCTCAACCTGCTGCACCGCCACTGCG
CCGGCGCCCTCCCCGTCTCGGCCGCGCAGCTGGGGCTGCcgcacgccccc
gcgcacgagcgcgcgctgcgcctggccgcggagcacgccagccagcgcgc
gTACGCCCAGTACGACGCGCTCGACTTTGATGGCGCCTGCCAAACGCTCA
TGGCCATCACCTTTGAGGCCAATTCCTACATCGACCGCGTGGCGCCCTGG
ACAAAGTTCAAGTCGCGCGATGCCGCCGACGTGCAAGCCGCCACCACGTG
CGTTGTCAACGTGCTGGAGGCCTGCAGGGTGGTTGCCGTCGGCTTGAACC
CCGTCGTGCCGCAACTTGCACAGCACGTCTACCACGCCCTGGGCCTGGCC
CACCACTACGACCGCGGCCTCATGTGGCACCACATCACGTGGGGGGCACT
CACGCAGGGCATGTCGTTTGCAAAGCCCAAGCCCGTCTTTCCGCGCCTCC
ACTTTGCTGCACCCGAGGCCGCCGAGCTTTCATAG

Coding sequence (CDS) from alignment at ScGOVlb_3404:4435616..4437400+

>Gvermi12378.t1 ID=Gvermi12378.t1|Name=Gvermi12378.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1785bp|location=Sequence derived from alignment at ScGOVlb_3404:4435616..4437400+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAGCCCGCGTTCGCGCCGGCGCTGGCGCTGCGATCCGCCCTGCGCCG
CCAGCCGCCCCGCCGCCTCCCGCCCCGCCGCGCCCTCGCCACGCGCCCCC
GCATCCGCGCCTGCGCCCCCGCCGCTCCCTCGCTCACCGGCCGAAAGCTC
GTCGTGTCCACCCCGCTGTACTACGTCAACGCCCCCCCGCACATGGGCTC
CGCCTACACCGCCATGGCCGCCGACGCCCTCGTGCGCTTCTACCGCATGG
CCGGCGCCCACCCCACCCTCGTCACCGGCACCGACGAGCACGGCGAGAAG
ATcgccgccgccgccgccgccgccgccgccgccgccgAGTCGCCGGAGCA
CCCCGCGTCGCCGCAGCCCTTCTGCGATCGCGTGTCGGACCAGTTCCGCC
ACCTGTGGCGCGTCCTGCAACTTTCGCCCCACTCCTTTGTGCGCACCACG
TCGCACCACCACCAGGCCGTCGTGCGCCTCTTCATGGAGCGCGTGTGGCA
GAACGGCGACATCTACAAGAGCCAGTACCAAGGCTTGTACTGCACCGGCT
GCGAGGAGTACAAGGACGTCAAAGACCTGCTCCCGGGCAACGTGTGCCCA
ACGCACCAAACGCCCTGCCCCACCCGCCACGAGGACAACTACTTCTTCGC
CCTGTCCAAGTACCAGCACCGCCTGCAAACCTTCTTGGAGCGCAACCCCG
CGTTTGTGCAGCCGCCCGAGCGCCGCAACGAGGTGCTGGCCTGGGTGCAC
GCCGGCCTGCGCGACTTTAGCGTGTCGAGGGCCAACAACCCGTGGGGCAT
CCCCGTCCCCCGTGACCACTCCCACACGATCTACGTCTGGTTTGACGCCC
TCGTCGGCTACCTCAGCGCCCTGCTCCCGCACGAcgccgccgccgccgcc
gccgccgccCACCCGCCCTCGCTCGACCTGCTGCACACCCACGGCTGGCC
GGCCCACGTCCACATCATCGGCAAGGACATTCTGCGCTTCCACGCCGTGT
ACTGGCCCGCCATGCTCATGTCGGCGGGGCTGCCGCTGCCGCGCACCGTC
TTTGGCCACGGCTTTCTCACCAAGGACGGCATGAAGATGGGCAAGAGCCT
GCGCAACGTCCTGGACCCCGTGCAGCTCGTGCGCGCCTACGGCACCGACG
CCGTGCGCTACTACTTTCTCAAGGCGCTCCACTTTGGCAGCGACGGCGAC
TTTTCCGAGCAGCGCTTTGTGGACGTCGTCAACGCCGACCTGGCCAACTC
GTTTGGCAACCTGCTCAACCGCGCGCTCAACCTGCTGCACCGCCACTGCG
CCGGCGCCCTCCCCGTCTCGGCCGCGCAGCTGGGGCTGCcgcacgccccc
gcgcacgagcgcgcgctgcgcctggccgcggagcacgccagccagcgcgc
gTACGCCCAGTACGACGCGCTCGACTTTGATGGCGCCTGCCAAACGCTCA
TGGCCATCACCTTTGAGGCCAATTCCTACATCGACCGCGTGGCGCCCTGG
ACAAAGTTCAAGTCGCGCGATGCCGCCGACGTGCAAGCCGCCACCACGTG
CGTTGTCAACGTGCTGGAGGCCTGCAGGGTGGTTGCCGTCGGCTTGAACC
CCGTCGTGCCGCAACTTGCACAGCACGTCTACCACGCCCTGGGCCTGGCC
CACCACTACGACCGCGGCCTCATGTGGCACCACATCACGTGGGGGGCACT
CACGCAGGGCATGTCGTTTGCAAAGCCCAAGCCCGTCTTTCCGCGCCTCC
ACTTTGCTGCACCCGAGGCCGCCGAGCTTTCATAG