Gvermi12375.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12375.t1
Unique NameGvermi12375.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length474
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4399441..4400951 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703500.1
Preferred nameDCAF11
PFAMsWD40
Max annot lvl2759|Eukaryota
KEGG koko:K10770,ko:K11801
GOsGO:0000122,GO:0000151,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0006355,GO:0006357,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007275,GO:0007568,GO:0008021,GO:0008134,GO:0008150,GO:0008152,GO:0008340,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010259,GO:0010468,GO:0010498,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0010941,GO:0010942,GO:0012505,GO:0016020,GO:0019219,GO:0019222,GO:0019538,GO:0019867,GO:0019941,GO:0030133,GO:0030163,GO:0030424,GO:0031090,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031410,GO:0031461,GO:0031966,GO:0031967,GO:0031968,GO:0031974,GO:0031975,GO:0031981,GO:0031982,GO:0032501,GO:0032502,GO:0032991,GO:0036211,GO:0036477,GO:0040008,GO:0040014,GO:0040018,GO:0042995,GO:0043005,GO:0043025,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043292,GO:0043412,GO:0043632,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044297,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044449,GO:0044456,GO:0044464,GO:0045202,GO:0045892,GO:0045927,GO:0045934,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048638,GO:0048639,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0051094,GO:0051171,GO:0051172,GO:0051239,GO:0051240,GO:0051252,GO:0051253,GO:0051603,GO:0055120,GO:0060255,GO:0065007,GO:0070013,GO:0070382,GO:0071704,GO:0080008,GO:0080090,GO:0080134,GO:0080135,GO:0097458,GO:0097708,GO:0098588,GO:0098793,GO:0098805,GO:0099080,GO:0099081,GO:0099503,GO:0099512,GO:0120025,GO:1901214,GO:1901216,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1905802,GO:1905803,GO:1990234,GO:2000112,GO:2000113,GO:2001141
Evalue1.87e-79
EggNOG OGsKOG0266@1|root,KOG0266@2759|Eukaryota
EC2.1.1.229
DescriptionWD repeat-containing protein
COG categoryB
BRITEko00000,ko01000,ko03016,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12375Gvermi12375Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4399441..4400951 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12375.t1Gvermi12375.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4399441..4400951 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12375.t1.stop1Gvermi12375.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4399441..4399443 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12375.t1.CDS1Gvermi12375.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4399441..4400039 -
Gvermi12375.t1.CDS2Gvermi12375.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4400129..4400951 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12375.t1.exon1Gvermi12375.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4399441..4400039 -
Gvermi12375.t1.exon2Gvermi12375.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4400129..4400951 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12375.t1.intron1Gvermi12375.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 4400040..4400128 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12375.t1.start1Gvermi12375.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4400949..4400951 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12375.t1 ID=Gvermi12375.t1|Name=Gvermi12375.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=474bp
MDLNQGARLQSSTMLIRELNRLVPYERLPRRSRPRRSTPSQSPSLIDLEL
CILQQVCLPNSRKPVSRHRALDAASKGFDVRPAVMQHAVLPTVRHHTVES
QAYRVYGARFVGDDGNMFVTTSQGSMIHVYSTSMSEHEAAWTKTHTIRAR
NVRWTITDFAVSPDGRWLAYASINSYIYLVDLRNPHLPQSVVNMAESREE
GLNIWSIIWSHDGRQLIAATGASDRLGPGSIVIYDIPSGSTAAFISAHAD
DVNSVCHLQTGNENLLLSASDDVMVKMWDKRETKYMSGRDMNRACAIFVG
HQYGLTHVSSKNDGRFLISNGKDQFIKLWDARKCTGTDNLDKVRKPPRDL
SFDYRMNPRPLVRQSRSFHDDSVATYAGSHETLQTLIKAHFSPMYSTGQK
YIYCGSSDGCCVIYDVLSGEAVEVLRGHRDVVRDVSWHPYGGFLTTGSWD
GEVALWSSHGDPKAETACGERES*
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spliced messenger RNA

>Gvermi12375.t1 ID=Gvermi12375.t1|Name=Gvermi12375.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1422bp|location=Sequence derived from alignment at ScGOVlb_3404:4399441..4400951- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATTTGAACCAGGGCGCGCGCCTCCAGAGTTCTACTATGTTAATTCG
TGAGCTTAACAGACTGGTTCCGTACGAGCGCTTGCCACGGCGTTCCCGTC
CTCGACGAAGCACCCCCTCTCAGTCACCCTCTCTGATAGACTTGGAGCTA
TGTATTTTACAACAGGTTTGTCTTCCTAACTCTCGAAAACCGGTTTCTCG
CCATCGTGCCTTGGATGCTGCTTCGAAGGGATTCGATGTGCGGCCTGCTG
TTATGCAACACGCAGTGCTTCCCACGGTTAGGCATCATACCGTCGAGTCG
CAAGCATACCGTGTCTACGGTGCCCGTTTTGTCGGGGATGATGGTAACAT
GTTCGTAACCACAAGTCAGGGTTCCATGATTCATGTTTACTCTACCTCTA
TGTCTGAACACGAAGCCGCATGGACGAAGACCCATACAATTCGCGCTCGG
AACGTCAGGTGGACTATCACTGATTTTGCAGTTAGTCCTGATGGGCGCTG
GCTAGCGTACGCTTCTATAAATTCATACATCTATCTGGTTGATCTTCGAA
ACCCACACTTGCCTCAATCCGTTGTCAATATGGCCGAGAGTCGAGAGGAG
GGACTTAACATTTGGAGCATCATATGGAGTCACGACGGTAGACAGCTTAT
TGCCGCAACGGGTGCATCTGATAGGTTGGGGCCCGGTAGTATTGTTATTT
ATGACATTCCTTCCGGCTCTACAGCTGCATTCATATCAGCCCACGCTGAT
GACGTGAACTCGGTGTGTCACCTACAGACTGGCAATGAAAATCTACTCTT
GTCAGCGTCAGACGATGTCATGGTGAAAATGTGGGACAAGAGAGAAACAA
AGTATATGTCTGGCAGAGACATGAACCGAGCATGCGCGATTTTTGTAGGC
CACCAATACGGGCTCACACATGTATCCTCGAAGAATGATGGGCGCTTTCT
AATAAGCAACGGAAAAGACCAGTTCATCAAATTGTGGGACGCTCGCAAAT
GCACTGGAACAGATAATTTGGACAAGGTAAGGAAGCCACCACGTGACCTG
AGCTTTGATTACAGAATGAATCCACGTCCTTTGGTACGTCAATCACGAAG
CTTTCATGATGATTCGGTCGCAACATACGCCGGGTCGCACGAAACGCTTC
AAACCTTGATCAAGGCTCACTTCAGTCCTATGTACAGTACAGGTCAAAAG
TATATATACTGCGGCTCAAGTGATGGCTGTTGTGTGATCTATGATGTTTT
GTCTGGGGAGGCAGTTGAGGTGTTGAGAGGCCATCGGGATGTGGTGAGAG
ATGTATCATGGCATCCATATGGAGGATTTCTGACTACAGGGTCATGGGAT
GGAGAGGTTGCACTGTGGTCCAGCCATGGCGATCCAAAGGCAGAAACGGC
TTGCGGGGAGAGGGAATCATGA
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protein sequence of Gvermi12375.t1

>Gvermi12375.t1 ID=Gvermi12375.t1|Name=Gvermi12375.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=474bp
MDLNQGARLQSSTMLIRELNRLVPYERLPRRSRPRRSTPSQSPSLIDLEL
CILQQVCLPNSRKPVSRHRALDAASKGFDVRPAVMQHAVLPTVRHHTVES
QAYRVYGARFVGDDGNMFVTTSQGSMIHVYSTSMSEHEAAWTKTHTIRAR
NVRWTITDFAVSPDGRWLAYASINSYIYLVDLRNPHLPQSVVNMAESREE
GLNIWSIIWSHDGRQLIAATGASDRLGPGSIVIYDIPSGSTAAFISAHAD
DVNSVCHLQTGNENLLLSASDDVMVKMWDKRETKYMSGRDMNRACAIFVG
HQYGLTHVSSKNDGRFLISNGKDQFIKLWDARKCTGTDNLDKVRKPPRDL
SFDYRMNPRPLVRQSRSFHDDSVATYAGSHETLQTLIKAHFSPMYSTGQK
YIYCGSSDGCCVIYDVLSGEAVEVLRGHRDVVRDVSWHPYGGFLTTGSWD
GEVALWSSHGDPKAETACGERES*
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mRNA from alignment at ScGOVlb_3404:4399441..4400951-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12375.t1 ID=Gvermi12375.t1|Name=Gvermi12375.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1511bp|location=Sequence derived from alignment at ScGOVlb_3404:4399441..4400951- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGATTTGAACCAGGGCGCGCGCCTCCAGAGTTCTACTATGTTAATTCG
TGAGCTTAACAGACTGGTTCCGTACGAGCGCTTGCCACGGCGTTCCCGTC
CTCGACGAAGCACCCCCTCTCAGTCACCCTCTCTGATAGACTTGGAGCTA
TGTATTTTACAACAGGTTTGTCTTCCTAACTCTCGAAAACCGGTTTCTCG
CCATCGTGCCTTGGATGCTGCTTCGAAGGGATTCGATGTGCGGCCTGCTG
TTATGCAACACGCAGTGCTTCCCACGGTTAGGCATCATACCGTCGAGTCG
CAAGCATACCGTGTCTACGGTGCCCGTTTTGTCGGGGATGATGGTAACAT
GTTCGTAACCACAAGTCAGGGTTCCATGATTCATGTTTACTCTACCTCTA
TGTCTGAACACGAAGCCGCATGGACGAAGACCCATACAATTCGCGCTCGG
AACGTCAGGTGGACTATCACTGATTTTGCAGTTAGTCCTGATGGGCGCTG
GCTAGCGTACGCTTCTATAAATTCATACATCTATCTGGTTGATCTTCGAA
ACCCACACTTGCCTCAATCCGTTGTCAATATGGCCGAGAGTCGAGAGGAG
GGACTTAACATTTGGAGCATCATATGGAGTCACGACGGTAGACAGCTTAT
TGCCGCAACGGGTGCATCTGATAGGTTGGGGCCCGGTAGTATTGTTATTT
ATGACATTCCTTCCGGCTCTACAGCTGCATTCATATCAGCCCACGCTGAT
GACGTGAACTCGGTGTGTCACCTACAGACTGGCAATGAAAATCTACTCTT
GTCAGCGTCAGACGATGTCATGGGTACGTAGCTATCATCGTTTATTGTGT
ATATCCAGTTCCTCACATCTAACCTCAGTTCTCCTTTCCTTGATTCGCCC
GTTGCCGAGTAGTGAAAATGTGGGACAAGAGAGAAACAAAGTATATGTCT
GGCAGAGACATGAACCGAGCATGCGCGATTTTTGTAGGCCACCAATACGG
GCTCACACATGTATCCTCGAAGAATGATGGGCGCTTTCTAATAAGCAACG
GAAAAGACCAGTTCATCAAATTGTGGGACGCTCGCAAATGCACTGGAACA
GATAATTTGGACAAGGTAAGGAAGCCACCACGTGACCTGAGCTTTGATTA
CAGAATGAATCCACGTCCTTTGGTACGTCAATCACGAAGCTTTCATGATG
ATTCGGTCGCAACATACGCCGGGTCGCACGAAACGCTTCAAACCTTGATC
AAGGCTCACTTCAGTCCTATGTACAGTACAGGTCAAAAGTATATATACTG
CGGCTCAAGTGATGGCTGTTGTGTGATCTATGATGTTTTGTCTGGGGAGG
CAGTTGAGGTGTTGAGAGGCCATCGGGATGTGGTGAGAGATGTATCATGG
CATCCATATGGAGGATTTCTGACTACAGGGTCATGGGATGGAGAGGTTGC
ACTGTGGTCCAGCCATGGCGATCCAAAGGCAGAAACGGCTTGCGGGGAGA
GGGAATCATGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4399441..4400951-

>Gvermi12375.t1 ID=Gvermi12375.t1|Name=Gvermi12375.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1422bp|location=Sequence derived from alignment at ScGOVlb_3404:4399441..4400951- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGATTTGAACCAGGGCGCGCGCCTCCAGAGTTCTACTATGTTAATTCG
TGAGCTTAACAGACTGGTTCCGTACGAGCGCTTGCCACGGCGTTCCCGTC
CTCGACGAAGCACCCCCTCTCAGTCACCCTCTCTGATAGACTTGGAGCTA
TGTATTTTACAACAGGTTTGTCTTCCTAACTCTCGAAAACCGGTTTCTCG
CCATCGTGCCTTGGATGCTGCTTCGAAGGGATTCGATGTGCGGCCTGCTG
TTATGCAACACGCAGTGCTTCCCACGGTTAGGCATCATACCGTCGAGTCG
CAAGCATACCGTGTCTACGGTGCCCGTTTTGTCGGGGATGATGGTAACAT
GTTCGTAACCACAAGTCAGGGTTCCATGATTCATGTTTACTCTACCTCTA
TGTCTGAACACGAAGCCGCATGGACGAAGACCCATACAATTCGCGCTCGG
AACGTCAGGTGGACTATCACTGATTTTGCAGTTAGTCCTGATGGGCGCTG
GCTAGCGTACGCTTCTATAAATTCATACATCTATCTGGTTGATCTTCGAA
ACCCACACTTGCCTCAATCCGTTGTCAATATGGCCGAGAGTCGAGAGGAG
GGACTTAACATTTGGAGCATCATATGGAGTCACGACGGTAGACAGCTTAT
TGCCGCAACGGGTGCATCTGATAGGTTGGGGCCCGGTAGTATTGTTATTT
ATGACATTCCTTCCGGCTCTACAGCTGCATTCATATCAGCCCACGCTGAT
GACGTGAACTCGGTGTGTCACCTACAGACTGGCAATGAAAATCTACTCTT
GTCAGCGTCAGACGATGTCATGGTGAAAATGTGGGACAAGAGAGAAACAA
AGTATATGTCTGGCAGAGACATGAACCGAGCATGCGCGATTTTTGTAGGC
CACCAATACGGGCTCACACATGTATCCTCGAAGAATGATGGGCGCTTTCT
AATAAGCAACGGAAAAGACCAGTTCATCAAATTGTGGGACGCTCGCAAAT
GCACTGGAACAGATAATTTGGACAAGGTAAGGAAGCCACCACGTGACCTG
AGCTTTGATTACAGAATGAATCCACGTCCTTTGGTACGTCAATCACGAAG
CTTTCATGATGATTCGGTCGCAACATACGCCGGGTCGCACGAAACGCTTC
AAACCTTGATCAAGGCTCACTTCAGTCCTATGTACAGTACAGGTCAAAAG
TATATATACTGCGGCTCAAGTGATGGCTGTTGTGTGATCTATGATGTTTT
GTCTGGGGAGGCAGTTGAGGTGTTGAGAGGCCATCGGGATGTGGTGAGAG
ATGTATCATGGCATCCATATGGAGGATTTCTGACTACAGGGTCATGGGAT
GGAGAGGTTGCACTGTGGTCCAGCCATGGCGATCCAAAGGCAGAAACGGC
TTGCGGGGAGAGGGAATCATGA
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