Gvermi12373.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12373.t1
Unique NameGvermi12373.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length650
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4393895..4395844 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704654.1
PFAMsGYR,YLP
Max annot lvl2759|Eukaryota
GOsGO:0003674,GO:0005488,GO:0005515
Evalue1.07e-18
EggNOG OGs2CKD8@1|root,2QVCG@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12373Gvermi12373Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4393895..4395844 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12373.t1.stop1Gvermi12373.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4393895..4393897 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12373.t1.CDS1Gvermi12373.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4393895..4395844 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12373.t1.exon1Gvermi12373.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4393895..4395844 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12373.t1.start1Gvermi12373.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4395842..4395844 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12373.t1Gvermi12373.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4393895..4395844 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12373.t1 ID=Gvermi12373.t1|Name=Gvermi12373.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=650bp
MCSSIVFLRATRVFVLTSLVITLFTHPVFSRETSDNSLSGASAPQSFVLR
RTLQQIQPNGDDSLDGDLKGSQRLAEAALQRQGIEEAQTAPENEQKEKGV
TKKPDEDDLNDVDAQIQEIAKRVGITEEELKQANILQSDTNNAAEVDGRL
DHHDMAEKQQSKNDAGREDILDARDKVDQLPPPPEEDVRQPAQAPPEMVA
PGQPLLRKVQKPGSIGKPQKPQDDKKGSPDSSIQSEASELTAQLETYKKR
LNSLLQSEQEARENERAARIEADELQKKMKSMKKEKKNAEQLVSERNADL
AKLRDSLPQIVKEAKDEERGEIEEMKETIEEQKRAFDELFEEKQMLSKML
ADEQRKLDELQEKIQHPDLGQWVRQRAERAAILVEGPETDAIKYYASQYM
APKVTKMKHRLQMLENRVEQTVDHLLPAKYGSVVAMLLSIGLVGFPIFVT
LSTVVSLTKGVSLRQYVLLGNVFLTAFAVGLGGVGLLLRQDPLQTLYEAN
GGMFIVLQLCIGVGYPLFLGVLMLTVMRCKDRLDMLVFGCELLFYVVIGM
NYRARVWRPAMLGENIDCGTMMYVVYTMDFFAMTALTVASSRSTGVGALG
GGVVDIEKGRGVEVGDGSGRADAGSKGIGTLGSNLIQMAVGSKRVEKAE*
back to top

spliced messenger RNA

>Gvermi12373.t1 ID=Gvermi12373.t1|Name=Gvermi12373.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1950bp|location=Sequence derived from alignment at ScGOVlb_3404:4393895..4395844- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCTCATCAATTGTTTTCCTACGAGCTACCAGGGTTTTCGTTTTGAC
ATCACTTGTGATAACTCTTTTCACCCATCCCGTGTTCTCTCGCGAAACGA
GCGATAATAGCCTCAGTGGAGCTTCTGCACCGCAAAGTTTTGTTCTGCGG
AGAACATTACAACAAATTCAACCCAATGGTGACGATTCACTCGATGGCGA
CTTGAAGGGCTCGCAACGCCTCGCGGAGGCTGCCCTACAAAGACAGGGGA
TAGAGGAGGCGCAGACAGCACCGGAAAATGAACAAAAGGAAAAAGGAGTC
ACAAAAAAACCGGACGAGGACGATCTCAATGATGTGGATGCCCAAATTCA
AGAGATTGCCAAACGAGTGGGAATTACTGAAGAAGAGCTCAAACAAGCAA
ATATTCTACAATCTGATACGAATAATGCAGCGGAGGTCGATGGAAGGTTA
GATCACCATGATATGGCGGAGAAACAACAAAGCAAGAATGATGCAGGTCG
GGAAGACATTTTGGATGCCAGAGATAAGGTTGATCAACTGCCTCCTCCTC
CAGAGGAGGATGTTCGGCAACCCGCGCAGGCTCCACCAGAAATGGTTGCG
CCTGGACAGCCCCTCTTGAGGAAAGTTCAGAAGCCAGGGAGCATCGGAAA
ACCGCAGAAGCCCCAGGATGATAAAAAGGGAAGCCCAGACAGCTCTATTC
AATCAGAAGCTTCTGAGCTTACTGCACAGTTGGAGACGTATAAGAAACGT
CTCAACAGTCTTTTGCAAAGCGAACAAGAGGCACGCGAGAACGAGAGGGC
CGCGAGAATTGAGGCGGATGAGTTGCAGAAAAAAATGAAATCAATGAAGA
AGGAAAAGAAAAATGCGGAACAACTCGTATCGGAACGAAACGCTGATCTT
GCTAAACTTCGTGATAGTTTACCACAGATTGTAAAGGAAGCAAAAGATGA
AGAGAGAGGAGAAATTGAGGAGATGAAGGAGACAATCGAAGAACAAAAAA
GAGCGTTTGACGAACTATTTGAAGAGAAGCAAATGCTGTCCAAAATGCTC
GCCGATGAACAACGTAAGCTAGACGAGCTTCAGGAGAAAATTCAACATCC
GGATCTGGGTCAGTGGGTGAGACAGCGTGCTGAAAGGGCGGCGATTCTCG
TTGAAGGTCCCGAAACAGATGCTATCAAGTATTATGCAAGTCAGTATATG
GCTCCGAAAGTTACTAAGATGAAACATCGATTACAAATGCTTGAGAATCG
GGTAGAACAAACCGTTGACCATCTATTACCGGCAAAGTATGGGAGTGTCG
TAGCCATGTTGTTGTCGATTGGACTGGTTGGGTTCCCCATATTTGTTACA
CTGTCGACCGTAGTTTCTCTGACGAAAGGAGTGTCGTTACGTCAATATGT
GCTTCTCGGAAATGTATTCCTAACGGCGTTTGCGGTTGGCCTGGGAGGTG
TGGGACTTTTACTTAGACAAGACCCGCTTCAAACTTTGTACGAAGCCAAT
GGTGGGATGTTCATTGTGCTTCAGTTGTGTATTGGAGTGGGATACCCGTT
GTTTTTGGGGGTTTTGATGCTCACAGTAATGCGTTGTAAGGATCGGTTGG
ATATGCTTGTGTTTGGATGCGAACTGCTTTTTTACGTAGTTATCGGAATG
AATTATCGTGCACGTGTGTGGAGACCTGCAATGTTGGGTGAGAATATTGA
CTGTGGAACCATGATGTACGTGGTGTACACAATGGACTTCTTCGCAATGA
CGGCACTGACTGTGGCTTCGTCGCGATCCACTGGGGTAGGGGCCCTTGGT
GGTGGTGTGGTTGACATTGAAAAAGGGCGTGGTGTGGAAGTCGGGGACGG
ATCTGGGAGAGCCGACGCGGGTTCGAAGGGGATTGGAACATTGGGGAGTA
ATTTGATCCAAATGGCTGTTGGGAGTAAACGAGTCGAAAAGGCTGAATAA
back to top

protein sequence of Gvermi12373.t1

>Gvermi12373.t1 ID=Gvermi12373.t1|Name=Gvermi12373.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=650bp
MCSSIVFLRATRVFVLTSLVITLFTHPVFSRETSDNSLSGASAPQSFVLR
RTLQQIQPNGDDSLDGDLKGSQRLAEAALQRQGIEEAQTAPENEQKEKGV
TKKPDEDDLNDVDAQIQEIAKRVGITEEELKQANILQSDTNNAAEVDGRL
DHHDMAEKQQSKNDAGREDILDARDKVDQLPPPPEEDVRQPAQAPPEMVA
PGQPLLRKVQKPGSIGKPQKPQDDKKGSPDSSIQSEASELTAQLETYKKR
LNSLLQSEQEARENERAARIEADELQKKMKSMKKEKKNAEQLVSERNADL
AKLRDSLPQIVKEAKDEERGEIEEMKETIEEQKRAFDELFEEKQMLSKML
ADEQRKLDELQEKIQHPDLGQWVRQRAERAAILVEGPETDAIKYYASQYM
APKVTKMKHRLQMLENRVEQTVDHLLPAKYGSVVAMLLSIGLVGFPIFVT
LSTVVSLTKGVSLRQYVLLGNVFLTAFAVGLGGVGLLLRQDPLQTLYEAN
GGMFIVLQLCIGVGYPLFLGVLMLTVMRCKDRLDMLVFGCELLFYVVIGM
NYRARVWRPAMLGENIDCGTMMYVVYTMDFFAMTALTVASSRSTGVGALG
GGVVDIEKGRGVEVGDGSGRADAGSKGIGTLGSNLIQMAVGSKRVEKAE*
back to top

mRNA from alignment at ScGOVlb_3404:4393895..4395844-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12373.t1 ID=Gvermi12373.t1|Name=Gvermi12373.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1950bp|location=Sequence derived from alignment at ScGOVlb_3404:4393895..4395844- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTGCTCATCAATTGTTTTCCTACGAGCTACCAGGGTTTTCGTTTTGAC
ATCACTTGTGATAACTCTTTTCACCCATCCCGTGTTCTCTCGCGAAACGA
GCGATAATAGCCTCAGTGGAGCTTCTGCACCGCAAAGTTTTGTTCTGCGG
AGAACATTACAACAAATTCAACCCAATGGTGACGATTCACTCGATGGCGA
CTTGAAGGGCTCGCAACGCCTCGCGGAGGCTGCCCTACAAAGACAGGGGA
TAGAGGAGGCGCAGACAGCACCGGAAAATGAACAAAAGGAAAAAGGAGTC
ACAAAAAAACCGGACGAGGACGATCTCAATGATGTGGATGCCCAAATTCA
AGAGATTGCCAAACGAGTGGGAATTACTGAAGAAGAGCTCAAACAAGCAA
ATATTCTACAATCTGATACGAATAATGCAGCGGAGGTCGATGGAAGGTTA
GATCACCATGATATGGCGGAGAAACAACAAAGCAAGAATGATGCAGGTCG
GGAAGACATTTTGGATGCCAGAGATAAGGTTGATCAACTGCCTCCTCCTC
CAGAGGAGGATGTTCGGCAACCCGCGCAGGCTCCACCAGAAATGGTTGCG
CCTGGACAGCCCCTCTTGAGGAAAGTTCAGAAGCCAGGGAGCATCGGAAA
ACCGCAGAAGCCCCAGGATGATAAAAAGGGAAGCCCAGACAGCTCTATTC
AATCAGAAGCTTCTGAGCTTACTGCACAGTTGGAGACGTATAAGAAACGT
CTCAACAGTCTTTTGCAAAGCGAACAAGAGGCACGCGAGAACGAGAGGGC
CGCGAGAATTGAGGCGGATGAGTTGCAGAAAAAAATGAAATCAATGAAGA
AGGAAAAGAAAAATGCGGAACAACTCGTATCGGAACGAAACGCTGATCTT
GCTAAACTTCGTGATAGTTTACCACAGATTGTAAAGGAAGCAAAAGATGA
AGAGAGAGGAGAAATTGAGGAGATGAAGGAGACAATCGAAGAACAAAAAA
GAGCGTTTGACGAACTATTTGAAGAGAAGCAAATGCTGTCCAAAATGCTC
GCCGATGAACAACGTAAGCTAGACGAGCTTCAGGAGAAAATTCAACATCC
GGATCTGGGTCAGTGGGTGAGACAGCGTGCTGAAAGGGCGGCGATTCTCG
TTGAAGGTCCCGAAACAGATGCTATCAAGTATTATGCAAGTCAGTATATG
GCTCCGAAAGTTACTAAGATGAAACATCGATTACAAATGCTTGAGAATCG
GGTAGAACAAACCGTTGACCATCTATTACCGGCAAAGTATGGGAGTGTCG
TAGCCATGTTGTTGTCGATTGGACTGGTTGGGTTCCCCATATTTGTTACA
CTGTCGACCGTAGTTTCTCTGACGAAAGGAGTGTCGTTACGTCAATATGT
GCTTCTCGGAAATGTATTCCTAACGGCGTTTGCGGTTGGCCTGGGAGGTG
TGGGACTTTTACTTAGACAAGACCCGCTTCAAACTTTGTACGAAGCCAAT
GGTGGGATGTTCATTGTGCTTCAGTTGTGTATTGGAGTGGGATACCCGTT
GTTTTTGGGGGTTTTGATGCTCACAGTAATGCGTTGTAAGGATCGGTTGG
ATATGCTTGTGTTTGGATGCGAACTGCTTTTTTACGTAGTTATCGGAATG
AATTATCGTGCACGTGTGTGGAGACCTGCAATGTTGGGTGAGAATATTGA
CTGTGGAACCATGATGTACGTGGTGTACACAATGGACTTCTTCGCAATGA
CGGCACTGACTGTGGCTTCGTCGCGATCCACTGGGGTAGGGGCCCTTGGT
GGTGGTGTGGTTGACATTGAAAAAGGGCGTGGTGTGGAAGTCGGGGACGG
ATCTGGGAGAGCCGACGCGGGTTCGAAGGGGATTGGAACATTGGGGAGTA
ATTTGATCCAAATGGCTGTTGGGAGTAAACGAGTCGAAAAGGCTGAATAA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_3404:4393895..4395844-

>Gvermi12373.t1 ID=Gvermi12373.t1|Name=Gvermi12373.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1950bp|location=Sequence derived from alignment at ScGOVlb_3404:4393895..4395844- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTGCTCATCAATTGTTTTCCTACGAGCTACCAGGGTTTTCGTTTTGAC
ATCACTTGTGATAACTCTTTTCACCCATCCCGTGTTCTCTCGCGAAACGA
GCGATAATAGCCTCAGTGGAGCTTCTGCACCGCAAAGTTTTGTTCTGCGG
AGAACATTACAACAAATTCAACCCAATGGTGACGATTCACTCGATGGCGA
CTTGAAGGGCTCGCAACGCCTCGCGGAGGCTGCCCTACAAAGACAGGGGA
TAGAGGAGGCGCAGACAGCACCGGAAAATGAACAAAAGGAAAAAGGAGTC
ACAAAAAAACCGGACGAGGACGATCTCAATGATGTGGATGCCCAAATTCA
AGAGATTGCCAAACGAGTGGGAATTACTGAAGAAGAGCTCAAACAAGCAA
ATATTCTACAATCTGATACGAATAATGCAGCGGAGGTCGATGGAAGGTTA
GATCACCATGATATGGCGGAGAAACAACAAAGCAAGAATGATGCAGGTCG
GGAAGACATTTTGGATGCCAGAGATAAGGTTGATCAACTGCCTCCTCCTC
CAGAGGAGGATGTTCGGCAACCCGCGCAGGCTCCACCAGAAATGGTTGCG
CCTGGACAGCCCCTCTTGAGGAAAGTTCAGAAGCCAGGGAGCATCGGAAA
ACCGCAGAAGCCCCAGGATGATAAAAAGGGAAGCCCAGACAGCTCTATTC
AATCAGAAGCTTCTGAGCTTACTGCACAGTTGGAGACGTATAAGAAACGT
CTCAACAGTCTTTTGCAAAGCGAACAAGAGGCACGCGAGAACGAGAGGGC
CGCGAGAATTGAGGCGGATGAGTTGCAGAAAAAAATGAAATCAATGAAGA
AGGAAAAGAAAAATGCGGAACAACTCGTATCGGAACGAAACGCTGATCTT
GCTAAACTTCGTGATAGTTTACCACAGATTGTAAAGGAAGCAAAAGATGA
AGAGAGAGGAGAAATTGAGGAGATGAAGGAGACAATCGAAGAACAAAAAA
GAGCGTTTGACGAACTATTTGAAGAGAAGCAAATGCTGTCCAAAATGCTC
GCCGATGAACAACGTAAGCTAGACGAGCTTCAGGAGAAAATTCAACATCC
GGATCTGGGTCAGTGGGTGAGACAGCGTGCTGAAAGGGCGGCGATTCTCG
TTGAAGGTCCCGAAACAGATGCTATCAAGTATTATGCAAGTCAGTATATG
GCTCCGAAAGTTACTAAGATGAAACATCGATTACAAATGCTTGAGAATCG
GGTAGAACAAACCGTTGACCATCTATTACCGGCAAAGTATGGGAGTGTCG
TAGCCATGTTGTTGTCGATTGGACTGGTTGGGTTCCCCATATTTGTTACA
CTGTCGACCGTAGTTTCTCTGACGAAAGGAGTGTCGTTACGTCAATATGT
GCTTCTCGGAAATGTATTCCTAACGGCGTTTGCGGTTGGCCTGGGAGGTG
TGGGACTTTTACTTAGACAAGACCCGCTTCAAACTTTGTACGAAGCCAAT
GGTGGGATGTTCATTGTGCTTCAGTTGTGTATTGGAGTGGGATACCCGTT
GTTTTTGGGGGTTTTGATGCTCACAGTAATGCGTTGTAAGGATCGGTTGG
ATATGCTTGTGTTTGGATGCGAACTGCTTTTTTACGTAGTTATCGGAATG
AATTATCGTGCACGTGTGTGGAGACCTGCAATGTTGGGTGAGAATATTGA
CTGTGGAACCATGATGTACGTGGTGTACACAATGGACTTCTTCGCAATGA
CGGCACTGACTGTGGCTTCGTCGCGATCCACTGGGGTAGGGGCCCTTGGT
GGTGGTGTGGTTGACATTGAAAAAGGGCGTGGTGTGGAAGTCGGGGACGG
ATCTGGGAGAGCCGACGCGGGTTCGAAGGGGATTGGAACATTGGGGAGTA
ATTTGATCCAAATGGCTGTTGGGAGTAAACGAGTCGAAAAGGCTGAATAA
back to top