Gvermi12368.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12368.t1
Unique NameGvermi12368.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length160
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4382814..4383293 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog28532.XP_010530026.1
PFAMsRibosomal_L21e
Max annot lvl35493|Streptophyta
KEGG koko:K02889
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
GOsGO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Evalue4.64e-50
EggNOG OGsCOG2139@1|root,KOG1732@2759|Eukaryota,37P3J@33090|Viridiplantae,3GBHC@35493|Streptophyta,3HYH2@3699|Brassicales
DescriptionRibosomal protein L21e
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12368Gvermi12368Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4382814..4383293 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12368.t1.start1Gvermi12368.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4382814..4382816 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12368.t1.CDS1Gvermi12368.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4382814..4383293 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12368.t1.exon1Gvermi12368.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4382814..4383293 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12368.t1.stop1Gvermi12368.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4383291..4383293 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12368.t1Gvermi12368.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4382814..4383293 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12368.t1 ID=Gvermi12368.t1|Name=Gvermi12368.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=160bp
MVRSNGKRTNTRHLFKKAFRKKGPEHLSTYLQTFKVGDFVDIHINPAVMK
GMPHKFYQGRTGRVFNISRTAVGVEVSKQVGNRIMMKRFHIRTEHVKKSR
CNEDFKHRAQQREKEAREAHKRGEKYVINKRTPVLPACAHVVDASTMELV
EPIPYEFVV*
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spliced messenger RNA

>Gvermi12368.t1 ID=Gvermi12368.t1|Name=Gvermi12368.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=480bp|location=Sequence derived from alignment at ScGOVlb_3404:4382814..4383293+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCCGCTCCAACGGAAAGCGCACCAATACGCGCCACCTCTTCAAGAA
GGCCTTCAGAAAGAAGGGGCCCGAGCACCTCTCCACGTACCTGCAGACCT
TCAAGGTGGGCGACTTTGTGGACATCCACATCAACCCCGCCGTCATGAAG
GGCATGCCGCACAAGTTTTACCAGGGCCGCACGGGGCGCGTGTTCAACAT
CTCGCGCACGGCCGTCGGCGTGGAGGTGTCCAAGCAGGTGGGTAACCGCA
TTATGATGAAGCGTTTCCACATCCGCACCGAGCACGTCAAGAAGAGCCGC
TGCAACGAGGACTTTAAGCACCGCGCCCAGCAGCGCGAGAAGGAGGCGAG
GGAGGCCCACAAGCGCGGCGAAAAGTATGTCATTAACAAGAGAACGCCTG
TTCTTCCAGCCTGTGCCCACGTTGTGGATGCTTCCACTATGGAACTCGTC
GAACCTATTCCGTACGAATTCGTTGTTTAA
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protein sequence of Gvermi12368.t1

>Gvermi12368.t1 ID=Gvermi12368.t1|Name=Gvermi12368.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=160bp
MVRSNGKRTNTRHLFKKAFRKKGPEHLSTYLQTFKVGDFVDIHINPAVMK
GMPHKFYQGRTGRVFNISRTAVGVEVSKQVGNRIMMKRFHIRTEHVKKSR
CNEDFKHRAQQREKEAREAHKRGEKYVINKRTPVLPACAHVVDASTMELV
EPIPYEFVV*
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mRNA from alignment at ScGOVlb_3404:4382814..4383293+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12368.t1 ID=Gvermi12368.t1|Name=Gvermi12368.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=480bp|location=Sequence derived from alignment at ScGOVlb_3404:4382814..4383293+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTCCGCTCCAACGGAAAGCGCACCAATACGCGCCACCTCTTCAAGAA
GGCCTTCAGAAAGAAGGGGCCCGAGCACCTCTCCACGTACCTGCAGACCT
TCAAGGTGGGCGACTTTGTGGACATCCACATCAACCCCGCCGTCATGAAG
GGCATGCCGCACAAGTTTTACCAGGGCCGCACGGGGCGCGTGTTCAACAT
CTCGCGCACGGCCGTCGGCGTGGAGGTGTCCAAGCAGGTGGGTAACCGCA
TTATGATGAAGCGTTTCCACATCCGCACCGAGCACGTCAAGAAGAGCCGC
TGCAACGAGGACTTTAAGCACCGCGCCCAGCAGCGCGAGAAGGAGGCGAG
GGAGGCCCACAAGCGCGGCGAAAAGTATGTCATTAACAAGAGAACGCCTG
TTCTTCCAGCCTGTGCCCACGTTGTGGATGCTTCCACTATGGAACTCGTC
GAACCTATTCCGTACGAATTCGTTGTTTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4382814..4383293+

>Gvermi12368.t1 ID=Gvermi12368.t1|Name=Gvermi12368.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=480bp|location=Sequence derived from alignment at ScGOVlb_3404:4382814..4383293+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTCCGCTCCAACGGAAAGCGCACCAATACGCGCCACCTCTTCAAGAA
GGCCTTCAGAAAGAAGGGGCCCGAGCACCTCTCCACGTACCTGCAGACCT
TCAAGGTGGGCGACTTTGTGGACATCCACATCAACCCCGCCGTCATGAAG
GGCATGCCGCACAAGTTTTACCAGGGCCGCACGGGGCGCGTGTTCAACAT
CTCGCGCACGGCCGTCGGCGTGGAGGTGTCCAAGCAGGTGGGTAACCGCA
TTATGATGAAGCGTTTCCACATCCGCACCGAGCACGTCAAGAAGAGCCGC
TGCAACGAGGACTTTAAGCACCGCGCCCAGCAGCGCGAGAAGGAGGCGAG
GGAGGCCCACAAGCGCGGCGAAAAGTATGTCATTAACAAGAGAACGCCTG
TTCTTCCAGCCTGTGCCCACGTTGTGGATGCTTCCACTATGGAACTCGTC
GAACCTATTCCGTACGAATTCGTTGTTTAA
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