Gvermi12365.t2 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12365.t2
Unique NameGvermi12365.t2
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length463
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4372361..4373749 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45351.EDO45438
PFAMsHis_Phos_2
Max annot lvl33208|Metazoa
KEGG rclassRC00017
KEGG koko:K14410,ko:K19283
KEGG ReactionR00548,R11527
KEGG Pathwayko00740,ko01100,ko04142,map00740,map01100,map04142
Evalue1.32e-19
EggNOG OGsKOG3720@1|root,KOG3720@2759|Eukaryota,38FTJ@33154|Opisthokonta,3B97H@33208|Metazoa
EC3.1.3.2,3.1.3.5
Descriptionacid phosphatase activity
COG categoryI
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12365Gvermi12365Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4372361..4373749 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12365.t2.stop1Gvermi12365.t2.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4372361..4372363 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12365.t2.CDS1Gvermi12365.t2.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4372361..4373749 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12365.t2.exon1Gvermi12365.t2.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4372361..4373749 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12365.t2.start1Gvermi12365.t2.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4373747..4373749 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12365.t2Gvermi12365.t2Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4372361..4373749 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12365.t2 ID=Gvermi12365.t2|Name=Gvermi12365.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=463bp
MRFSRFLLTLLLACFSCFVSARIIQVQVIHRHGARLPLKKSPTDPREEER
TGSIYRDGIEQLSRLGKYIRDQYIESDEGIEGIGASYDPPGYVGSFSSNF
ERTQFSARAFLHGLYPEHEHLIPTMVFNSSEFDWIIRGYAICPKLASLFQ
DFVKGSEFEIHEKKDNAFVAGLAKKLGHPKEEQNLEHVFNVYDEYNIINS
GYDKSERFANIEKLPESDMNRLREIVDWYETTKFSYATHKIHVAGGLLKE
ILSHANNIDSTSKKKNFRIVEYSAHYPTLLTLWATIRATIERESMPPANK
LPEFGAAIIIEVHQDNSSRGDRVLHFKWYQGGDGDPEVEPIAVGIPRCTD
VTKGCSLQNFQRITALDSMGKKKFCMDCEADLCDLDSRSIALATTTSDES
VFCSVGKRVTAGAIGACVGLTLGLLGAVLYIVLSGKKKRRDLESHARIVN
MEQSTFHGEVHA*
back to top

spliced messenger RNA

>Gvermi12365.t2 ID=Gvermi12365.t2|Name=Gvermi12365.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1389bp|location=Sequence derived from alignment at ScGOVlb_3404:4372361..4373749- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCTTCTCTCGCTTTCTTCTCACGCTTCTCCTCGCTTGCTTCTCGTG
CTTTGTGAGTGCGCGTATTATCCAGGTACAGGTTATTCATCGCCATGGTG
CGAGACTTCCTCTGAAGAAAAGCCCAACTGATCCGCGTGAAGAAGAGCGG
ACTGGCAGTATCTATAGGGATGGCATCGAACAGCTTTCTAGACTTGGAAA
ATATATTCGAGATCAATACATCGAATCTGATGAAGGCATCGAAGGTATAG
GGGCAAGTTACGATCCCCCCGGCTACGTTGGCTCATTCAGCTCAAATTTT
GAGCGCACGCAATTCAGTGCCCGTGCTTTCTTGCACGGACTGTATCCAGA
ACATGAACATCTTATCCCCACTATGGTTTTCAACAGCTCAGAATTTGACT
GGATCATTCGCGGCTACGCCATATGCCCGAAGTTGGCTTCGCTGTTTCAA
GATTTTGTAAAGGGCTCAGAATTTGAAATTCATGAGAAAAAGGACAATGC
TTTCGTCGCCGGCTTGGCAAAAAAGTTGGGTCATCCCAAGGAGGAACAGA
ACCTGGAGCATGTGTTTAATGTTTACGATGAATACAACATCATCAACAGT
GGTTATGACAAAAGTGAGAGATTTGCCAATATTGAAAAGCTTCCTGAATC
TGATATGAATCGTCTCAGAGAAATTGTGGACTGGTACGAGACCACCAAGT
TCTCGTATGCCACTCACAAAATTCACGTTGCAGGTGGTCTCCTAAAGGAA
ATTTTGAGTCATGCGAATAACATAGATTCCACGTCCAAGAAGAAAAATTT
TCGCATCGTCGAATACTCTGCGCATTATCCCACACTTCTCACCTTGTGGG
CAACCATTCGTGCCACCATCGAACGCGAATCAATGCCGCCTGCCAACAAA
CTCCCAGAATTTGGGGCCGCAATCATCATTGAAGTTCACCAAGACAATTC
ATCGAGAGGCGATCGCGTACTTCACTTCAAATGGTATCAAGGTGGCGATG
GCGATCCCGAAGTAGAGCCCATCGCTGTTGGTATTCCTCGTTGCACAGAT
GTCACAAAAGGATGTTCCCTTCAGAATTTTCAACGAATCACAGCTCTGGA
CTCTATGGGCAAGAAGAAGTTTTGCATGGATTGTGAGGCAGACTTGTGTG
ATCTTGACTCTCGGTCAATTGCGCTCGCAACAACTACCAGCGACGAATCC
GTGTTTTGTTCTGTTGGAAAGCGGGTTACAGCCGGCGCTATTGGTGCTTG
TGTAGGACTCACGCTTGGTTTGCTCGGCGCCGTGCTGTATATTGTTCTCA
GTGGCAAGAAAAAGAGGCGCGATCTTGAATCGCATGCAAGAATTGTGAAC
ATGGAGCAGTCCACTTTCCATGGTGAAGTTCACGCGTAA
back to top

protein sequence of Gvermi12365.t2

>Gvermi12365.t2 ID=Gvermi12365.t2|Name=Gvermi12365.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=463bp
MRFSRFLLTLLLACFSCFVSARIIQVQVIHRHGARLPLKKSPTDPREEER
TGSIYRDGIEQLSRLGKYIRDQYIESDEGIEGIGASYDPPGYVGSFSSNF
ERTQFSARAFLHGLYPEHEHLIPTMVFNSSEFDWIIRGYAICPKLASLFQ
DFVKGSEFEIHEKKDNAFVAGLAKKLGHPKEEQNLEHVFNVYDEYNIINS
GYDKSERFANIEKLPESDMNRLREIVDWYETTKFSYATHKIHVAGGLLKE
ILSHANNIDSTSKKKNFRIVEYSAHYPTLLTLWATIRATIERESMPPANK
LPEFGAAIIIEVHQDNSSRGDRVLHFKWYQGGDGDPEVEPIAVGIPRCTD
VTKGCSLQNFQRITALDSMGKKKFCMDCEADLCDLDSRSIALATTTSDES
VFCSVGKRVTAGAIGACVGLTLGLLGAVLYIVLSGKKKRRDLESHARIVN
MEQSTFHGEVHA*
back to top

mRNA from alignment at ScGOVlb_3404:4372361..4373749-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12365.t2 ID=Gvermi12365.t2|Name=Gvermi12365.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1389bp|location=Sequence derived from alignment at ScGOVlb_3404:4372361..4373749- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCTTCTCTCGCTTTCTTCTCACGCTTCTCCTCGCTTGCTTCTCGTG
CTTTGTGAGTGCGCGTATTATCCAGGTACAGGTTATTCATCGCCATGGTG
CGAGACTTCCTCTGAAGAAAAGCCCAACTGATCCGCGTGAAGAAGAGCGG
ACTGGCAGTATCTATAGGGATGGCATCGAACAGCTTTCTAGACTTGGAAA
ATATATTCGAGATCAATACATCGAATCTGATGAAGGCATCGAAGGTATAG
GGGCAAGTTACGATCCCCCCGGCTACGTTGGCTCATTCAGCTCAAATTTT
GAGCGCACGCAATTCAGTGCCCGTGCTTTCTTGCACGGACTGTATCCAGA
ACATGAACATCTTATCCCCACTATGGTTTTCAACAGCTCAGAATTTGACT
GGATCATTCGCGGCTACGCCATATGCCCGAAGTTGGCTTCGCTGTTTCAA
GATTTTGTAAAGGGCTCAGAATTTGAAATTCATGAGAAAAAGGACAATGC
TTTCGTCGCCGGCTTGGCAAAAAAGTTGGGTCATCCCAAGGAGGAACAGA
ACCTGGAGCATGTGTTTAATGTTTACGATGAATACAACATCATCAACAGT
GGTTATGACAAAAGTGAGAGATTTGCCAATATTGAAAAGCTTCCTGAATC
TGATATGAATCGTCTCAGAGAAATTGTGGACTGGTACGAGACCACCAAGT
TCTCGTATGCCACTCACAAAATTCACGTTGCAGGTGGTCTCCTAAAGGAA
ATTTTGAGTCATGCGAATAACATAGATTCCACGTCCAAGAAGAAAAATTT
TCGCATCGTCGAATACTCTGCGCATTATCCCACACTTCTCACCTTGTGGG
CAACCATTCGTGCCACCATCGAACGCGAATCAATGCCGCCTGCCAACAAA
CTCCCAGAATTTGGGGCCGCAATCATCATTGAAGTTCACCAAGACAATTC
ATCGAGAGGCGATCGCGTACTTCACTTCAAATGGTATCAAGGTGGCGATG
GCGATCCCGAAGTAGAGCCCATCGCTGTTGGTATTCCTCGTTGCACAGAT
GTCACAAAAGGATGTTCCCTTCAGAATTTTCAACGAATCACAGCTCTGGA
CTCTATGGGCAAGAAGAAGTTTTGCATGGATTGTGAGGCAGACTTGTGTG
ATCTTGACTCTCGGTCAATTGCGCTCGCAACAACTACCAGCGACGAATCC
GTGTTTTGTTCTGTTGGAAAGCGGGTTACAGCCGGCGCTATTGGTGCTTG
TGTAGGACTCACGCTTGGTTTGCTCGGCGCCGTGCTGTATATTGTTCTCA
GTGGCAAGAAAAAGAGGCGCGATCTTGAATCGCATGCAAGAATTGTGAAC
ATGGAGCAGTCCACTTTCCATGGTGAAGTTCACGCGTAA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_3404:4372361..4373749-

>Gvermi12365.t2 ID=Gvermi12365.t2|Name=Gvermi12365.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1389bp|location=Sequence derived from alignment at ScGOVlb_3404:4372361..4373749- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCTTCTCTCGCTTTCTTCTCACGCTTCTCCTCGCTTGCTTCTCGTG
CTTTGTGAGTGCGCGTATTATCCAGGTACAGGTTATTCATCGCCATGGTG
CGAGACTTCCTCTGAAGAAAAGCCCAACTGATCCGCGTGAAGAAGAGCGG
ACTGGCAGTATCTATAGGGATGGCATCGAACAGCTTTCTAGACTTGGAAA
ATATATTCGAGATCAATACATCGAATCTGATGAAGGCATCGAAGGTATAG
GGGCAAGTTACGATCCCCCCGGCTACGTTGGCTCATTCAGCTCAAATTTT
GAGCGCACGCAATTCAGTGCCCGTGCTTTCTTGCACGGACTGTATCCAGA
ACATGAACATCTTATCCCCACTATGGTTTTCAACAGCTCAGAATTTGACT
GGATCATTCGCGGCTACGCCATATGCCCGAAGTTGGCTTCGCTGTTTCAA
GATTTTGTAAAGGGCTCAGAATTTGAAATTCATGAGAAAAAGGACAATGC
TTTCGTCGCCGGCTTGGCAAAAAAGTTGGGTCATCCCAAGGAGGAACAGA
ACCTGGAGCATGTGTTTAATGTTTACGATGAATACAACATCATCAACAGT
GGTTATGACAAAAGTGAGAGATTTGCCAATATTGAAAAGCTTCCTGAATC
TGATATGAATCGTCTCAGAGAAATTGTGGACTGGTACGAGACCACCAAGT
TCTCGTATGCCACTCACAAAATTCACGTTGCAGGTGGTCTCCTAAAGGAA
ATTTTGAGTCATGCGAATAACATAGATTCCACGTCCAAGAAGAAAAATTT
TCGCATCGTCGAATACTCTGCGCATTATCCCACACTTCTCACCTTGTGGG
CAACCATTCGTGCCACCATCGAACGCGAATCAATGCCGCCTGCCAACAAA
CTCCCAGAATTTGGGGCCGCAATCATCATTGAAGTTCACCAAGACAATTC
ATCGAGAGGCGATCGCGTACTTCACTTCAAATGGTATCAAGGTGGCGATG
GCGATCCCGAAGTAGAGCCCATCGCTGTTGGTATTCCTCGTTGCACAGAT
GTCACAAAAGGATGTTCCCTTCAGAATTTTCAACGAATCACAGCTCTGGA
CTCTATGGGCAAGAAGAAGTTTTGCATGGATTGTGAGGCAGACTTGTGTG
ATCTTGACTCTCGGTCAATTGCGCTCGCAACAACTACCAGCGACGAATCC
GTGTTTTGTTCTGTTGGAAAGCGGGTTACAGCCGGCGCTATTGGTGCTTG
TGTAGGACTCACGCTTGGTTTGCTCGGCGCCGTGCTGTATATTGTTCTCA
GTGGCAAGAAAAAGAGGCGCGATCTTGAATCGCATGCAAGAATTGTGAAC
ATGGAGCAGTCCACTTTCCATGGTGAAGTTCACGCGTAA
back to top