Gvermi12364.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12364.t1
Unique NameGvermi12364.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length449
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4369380..4370985 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog313612.L8106_17024
Max annot lvl1117|Cyanobacteria
Evalue2.49e-10
EggNOG OGsCOG3319@1|root,COG3319@2|Bacteria,1G4RE@1117|Cyanobacteria,1H9Z4@1150|Oscillatoriales
Descriptionamino acid activation for nonribosomal peptide biosynthetic process
COG categoryQ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12364Gvermi12364Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4369380..4370985 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12364.t1Gvermi12364.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4369380..4370985 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12364.t1.start1Gvermi12364.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4369380..4369382 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12364.t1.CDS1Gvermi12364.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4369380..4369689 +
Gvermi12364.t1.CDS2Gvermi12364.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4369809..4370724 +
Gvermi12364.t1.CDS3Gvermi12364.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4370865..4370985 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12364.t1.exon1Gvermi12364.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4369380..4369689 +
Gvermi12364.t1.exon2Gvermi12364.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4369809..4370724 +
Gvermi12364.t1.exon3Gvermi12364.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4370865..4370985 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12364.t1.intron1Gvermi12364.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 4369690..4369808 +
Gvermi12364.t1.intron2Gvermi12364.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 4370725..4370864 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12364.t1.stop1Gvermi12364.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4370983..4370985 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12364.t1 ID=Gvermi12364.t1|Name=Gvermi12364.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=449bp
MGGTQSGEEVSEVVYDGDQAPEQPQEEEDTVHYEEMSEDMKALLDANTYM
PGDNAKYPYFLVQLAEREEREYEGQLVSDAIAEYIRTHRVTHIFAQTHGW
NTPPDKAVAVPFTEFMGGMQDDRAMPESSDDFQPIFIAFIWPAVPVDFIK
TDDALTKAELLASNERELEGDSDIAHACDAVKRAVENEDPDDDELKESMR
TLVSQSRDDDDDDDDDPDNILEREREVAREADYQVTSRGIGNVGDFFKIV
MRPMETFIFGRLMKRGQRVGEVMGSVIGKIMRASETRMKVCLMANSLGAH
VLVGLLNRPHTLPYKLHTVFFVQGAIAQEYFEDGGRFGHVKEFVAGPVVV
SHSEHDRMLRNVFGWFHGIAIGYSGTPAGASCRMKALSEIDEDPYSFECG
EWNNIDGSEFINEGNPVAGGHGDFKEDETTSLYWSAIKTEVDDSAYDI*
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spliced messenger RNA

>Gvermi12364.t1 ID=Gvermi12364.t1|Name=Gvermi12364.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1347bp|location=Sequence derived from alignment at ScGOVlb_3404:4369380..4370985+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTGGCACGCAAAGCGGAGAGGAAGTGTCAGAAGTCGTCTACGATGG
TGATCAAGCTCCCGAACAACCGCAGGAAGAAGAAGATACAGTACATTATG
AAGAAATGTCCGAGGATATGAAGGCACTTCTGGATGCCAATACGTACATG
CCCGGTGACAACGCCAAGTATCCGTACTTTCTTGTTCAACTCGCTGAAAG
AGAAGAACGTGAGTATGAAGGACAATTGGTATCTGATGCTATCGCCGAAT
ACATTCGAACCCATCGTGTAACTCACATTTTTGCTCAAACCCATGGATGG
AACACACCTCCGGATAAGGCTGTGGCTGTGCCATTCACAGAGTTCATGGG
GGGCATGCAAGACGACCGAGCTATGCCGGAATCATCAGACGATTTTCAGC
CCATCTTCATTGCCTTCATTTGGCCGGCAGTGCCTGTCGATTTCATAAAG
ACGGACGATGCCCTTACAAAGGCTGAGCTGCTCGCCAGCAATGAGCGTGA
GCTCGAAGGAGATTCTGATATTGCTCATGCATGTGATGCTGTCAAACGCG
CGGTAGAAAACGAAGATCCTGATGATGACGAACTCAAGGAATCCATGCGT
ACTTTGGTGAGTCAAAGCCGtgatgatgatgatgacgatgatgacgatCC
GGATAACATTCTTGAGAGAGAACGCGAAGTTGCAAGAGAGGCCGATTATC
AAGTGACGTCACGAGGTATAGGAAATGTTGGAGACTTCTTCAAAATTGTT
ATGCGGCCAATGGAGACCTTTATCTTCGGAAGACTCATGAAACGAGGACA
GCGTGTTGGTGAGGTAATGGGCTCAGTGATTGGAAAAATCATGAGAGCAT
CCGAGACGAGGATGAAAGTGTGTCTTATGGCGAATTCTCTGGGGGCTCAT
GTTCTGGTGGGTTTACTGAATAGACCTCACACCCTTCCTTACAAGTTGCA
TACGGTGTTCTTTGTGCAAGGAGCCATTGCTCAGGAGTATTTCGAAGATG
GTGGAAGGTTTGGTCACGTCAAAGAGTTTGTTGCTGGACCCGTTGTCGTG
TCGCACAGCGAACATGATCGAATGCTACGAAACGTGTTTGGTTGGTTCCA
CGGTATTGCCATAGGCTATAGTGGCACTCCAGCTGGAGCATCGTGCAGGA
TGAAGGCTTTGAGCGAAATAGATGAAGACCCTTACAGTTTTGAATGTGGT
GAATGGAACAATATTGACGGCTCAGAGTTCATCAATGAAGGAAATCCGGT
TGCCGGCGGACATGGTGATTTCAAAGAAGATGAAACCACAAGTTTGTATT
GGTCTGCCATTAAAACTGAAGTAGACGATTCGGCATACGATATCTAA
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protein sequence of Gvermi12364.t1

>Gvermi12364.t1 ID=Gvermi12364.t1|Name=Gvermi12364.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=449bp
MGGTQSGEEVSEVVYDGDQAPEQPQEEEDTVHYEEMSEDMKALLDANTYM
PGDNAKYPYFLVQLAEREEREYEGQLVSDAIAEYIRTHRVTHIFAQTHGW
NTPPDKAVAVPFTEFMGGMQDDRAMPESSDDFQPIFIAFIWPAVPVDFIK
TDDALTKAELLASNERELEGDSDIAHACDAVKRAVENEDPDDDELKESMR
TLVSQSRDDDDDDDDDPDNILEREREVAREADYQVTSRGIGNVGDFFKIV
MRPMETFIFGRLMKRGQRVGEVMGSVIGKIMRASETRMKVCLMANSLGAH
VLVGLLNRPHTLPYKLHTVFFVQGAIAQEYFEDGGRFGHVKEFVAGPVVV
SHSEHDRMLRNVFGWFHGIAIGYSGTPAGASCRMKALSEIDEDPYSFECG
EWNNIDGSEFINEGNPVAGGHGDFKEDETTSLYWSAIKTEVDDSAYDI*
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mRNA from alignment at ScGOVlb_3404:4369380..4370985+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12364.t1 ID=Gvermi12364.t1|Name=Gvermi12364.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1606bp|location=Sequence derived from alignment at ScGOVlb_3404:4369380..4370985+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGTGGCACGCAAAGCGGAGAGGAAGTGTCAGAAGTCGTCTACGATGG
TGATCAAGCTCCCGAACAACCGCAGGAAGAAGAAGATACAGTACATTATG
AAGAAATGTCCGAGGATATGAAGGCACTTCTGGATGCCAATACGTACATG
CCCGGTGACAACGCCAAGTATCCGTACTTTCTTGTTCAACTCGCTGAAAG
AGAAGAACGTGAGTATGAAGGACAATTGGTATCTGATGCTATCGCCGAAT
ACATTCGAACCCATCGTGTAACTCACATTTTTGCTCAAACCCATGGATGG
AACACACCTCGTGAGTTTAACTGTTTATGTCGCCCCCGTCATGCTCTTTT
GAATTCAGACAATCCACGCGTTTACTAACACTCATTGTGTGACGGTCCTG
ATTTCTTTAATTCCATGTATGTTATGCAGCGGATAAGGCTGTGGCTGTGC
CATTCACAGAGTTCATGGGGGGCATGCAAGACGACCGAGCTATGCCGGAA
TCATCAGACGATTTTCAGCCCATCTTCATTGCCTTCATTTGGCCGGCAGT
GCCTGTCGATTTCATAAAGACGGACGATGCCCTTACAAAGGCTGAGCTGC
TCGCCAGCAATGAGCGTGAGCTCGAAGGAGATTCTGATATTGCTCATGCA
TGTGATGCTGTCAAACGCGCGGTAGAAAACGAAGATCCTGATGATGACGA
ACTCAAGGAATCCATGCGTACTTTGGTGAGTCAAAGCCGtgatgatgatg
atgacgatgatgacgatCCGGATAACATTCTTGAGAGAGAACGCGAAGTT
GCAAGAGAGGCCGATTATCAAGTGACGTCACGAGGTATAGGAAATGTTGG
AGACTTCTTCAAAATTGTTATGCGGCCAATGGAGACCTTTATCTTCGGAA
GACTCATGAAACGAGGACAGCGTGTTGGTGAGGTAATGGGCTCAGTGATT
GGAAAAATCATGAGAGCATCCGAGACGAGGATGAAAGTGTGTCTTATGGC
GAATTCTCTGGGGGCTCATGTTCTGGTGGGTTTACTGAATAGACCTCACA
CCCTTCCTTACAAGTTGCATACGGTGTTCTTTGTGCAAGGAGCCATTGCT
CAGGAGTATTTCGAAGATGGTGGAAGGTTTGGTCACGTCAAAGAGTTTGT
TGCTGGACCCGTTGTCGTGTCGCACAGCGAACATGATCGAATGCTACGAA
ACGTGTTTGGTTGGTTCCACGGTATTGCCATAGGCTATAGTGGCACTCCA
GCTGGAGCATCGTGCAGGATGAAGGCTTTGAGCGAAATAGATGAAGACCC
TTACAGTTTTGAATGTGGTGAATGGAACAATATTGACGGCTCAGAGTACG
TTAGATGAGTTTCCTTTTCTTTGAACTTCCGGTATTTGCGAACTCTCTAC
GCCGAAGACGAACTAACCTTTTCGGACAAAATGCTGTCATGCCCGAATGT
CTTATTCTTGATTGCGACTCTTGTTCTTTTTATAGGTTCATCAATGAAGG
AAATCCGGTTGCCGGCGGACATGGTGATTTCAAAGAAGATGAAACCACAA
GTTTGTATTGGTCTGCCATTAAAACTGAAGTAGACGATTCGGCATACGAT
ATCTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4369380..4370985+

>Gvermi12364.t1 ID=Gvermi12364.t1|Name=Gvermi12364.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1347bp|location=Sequence derived from alignment at ScGOVlb_3404:4369380..4370985+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGTGGCACGCAAAGCGGAGAGGAAGTGTCAGAAGTCGTCTACGATGG
TGATCAAGCTCCCGAACAACCGCAGGAAGAAGAAGATACAGTACATTATG
AAGAAATGTCCGAGGATATGAAGGCACTTCTGGATGCCAATACGTACATG
CCCGGTGACAACGCCAAGTATCCGTACTTTCTTGTTCAACTCGCTGAAAG
AGAAGAACGTGAGTATGAAGGACAATTGGTATCTGATGCTATCGCCGAAT
ACATTCGAACCCATCGTGTAACTCACATTTTTGCTCAAACCCATGGATGG
AACACACCTCCGGATAAGGCTGTGGCTGTGCCATTCACAGAGTTCATGGG
GGGCATGCAAGACGACCGAGCTATGCCGGAATCATCAGACGATTTTCAGC
CCATCTTCATTGCCTTCATTTGGCCGGCAGTGCCTGTCGATTTCATAAAG
ACGGACGATGCCCTTACAAAGGCTGAGCTGCTCGCCAGCAATGAGCGTGA
GCTCGAAGGAGATTCTGATATTGCTCATGCATGTGATGCTGTCAAACGCG
CGGTAGAAAACGAAGATCCTGATGATGACGAACTCAAGGAATCCATGCGT
ACTTTGGTGAGTCAAAGCCGtgatgatgatgatgacgatgatgacgatCC
GGATAACATTCTTGAGAGAGAACGCGAAGTTGCAAGAGAGGCCGATTATC
AAGTGACGTCACGAGGTATAGGAAATGTTGGAGACTTCTTCAAAATTGTT
ATGCGGCCAATGGAGACCTTTATCTTCGGAAGACTCATGAAACGAGGACA
GCGTGTTGGTGAGGTAATGGGCTCAGTGATTGGAAAAATCATGAGAGCAT
CCGAGACGAGGATGAAAGTGTGTCTTATGGCGAATTCTCTGGGGGCTCAT
GTTCTGGTGGGTTTACTGAATAGACCTCACACCCTTCCTTACAAGTTGCA
TACGGTGTTCTTTGTGCAAGGAGCCATTGCTCAGGAGTATTTCGAAGATG
GTGGAAGGTTTGGTCACGTCAAAGAGTTTGTTGCTGGACCCGTTGTCGTG
TCGCACAGCGAACATGATCGAATGCTACGAAACGTGTTTGGTTGGTTCCA
CGGTATTGCCATAGGCTATAGTGGCACTCCAGCTGGAGCATCGTGCAGGA
TGAAGGCTTTGAGCGAAATAGATGAAGACCCTTACAGTTTTGAATGTGGT
GAATGGAACAATATTGACGGCTCAGAGTTCATCAATGAAGGAAATCCGGT
TGCCGGCGGACATGGTGATTTCAAAGAAGATGAAACCACAAGTTTGTATT
GGTCTGCCATTAAAACTGAAGTAGACGATTCGGCATACGATATCTAA
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