Gvermi12361.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12361.t1
Unique NameGvermi12361.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length146
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4363882..4364319 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1229205.BUPH_05690
PFAMsHSP20
Max annot lvl28216|Betaproteobacteria
Evalue1.51e-11
EggNOG OGsCOG0071@1|root,COG0071@2|Bacteria,1NA27@1224|Proteobacteria,2VTTZ@28216|Betaproteobacteria,1KH84@119060|Burkholderiaceae
DescriptionBelongs to the small heat shock protein (HSP20) family
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12361Gvermi12361Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4363882..4364319 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12361.t1.start1Gvermi12361.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4363882..4363884 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12361.t1.CDS1Gvermi12361.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4363882..4364319 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12361.t1.exon1Gvermi12361.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4363882..4364319 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12361.t1.stop1Gvermi12361.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4364317..4364319 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12361.t1Gvermi12361.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4363882..4364319 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12361.t1 ID=Gvermi12361.t1|Name=Gvermi12361.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=146bp
MVMFIAPFSMPSFTFFDVESMDCKSEHKDTQVNAAAYTKRADARGTTLQV
DLPGVEKDHVSIEVNGRQLMVTGKRYKVPTGSALDNRKTHNDSKNDKNCI
VYKRTFELGRDFDSEAIEAESFENGVLTLVIPKKEKLQPRRITVQ*
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spliced messenger RNA

>Gvermi12361.t1 ID=Gvermi12361.t1|Name=Gvermi12361.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=438bp|location=Sequence derived from alignment at ScGOVlb_3404:4363882..4364319+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCATGTTCATAGCTCCGTTTTCAATGCCGTCCTTCACTTTCTTCGA
TGTAGAGTCCATGGATTGCAAATCAGAACACAAAGATACTCAGGTGAACG
CTGCTGCTTATACGAAGCGGGCAGATGCTAGAGGAACAACTTTGCAAGTC
GACTTACCTGGCGTTGAAAAAGATCACGTCTCCATCGAAGTAAATGGACG
TCAGCTAATGGTGACAGGAAAAAGGTACAAAGTTCCAACAGGATCTGCAC
TGGATAACAGAAAGACACACAACGATTCCAAGAACGATAAAAATTGTATC
GTATATAAGAGGACGTTCGAGCTCGGCCGTGATTTTGATTCCGAGGCAAT
TGAAGCAGAGAGCTTTGAGAATGGGGTATTAACGCTTGTGATTCCAAAGA
AGGAAAAACTACAGCCGAGAAGAATCACCGTGCAATAA
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protein sequence of Gvermi12361.t1

>Gvermi12361.t1 ID=Gvermi12361.t1|Name=Gvermi12361.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=146bp
MVMFIAPFSMPSFTFFDVESMDCKSEHKDTQVNAAAYTKRADARGTTLQV
DLPGVEKDHVSIEVNGRQLMVTGKRYKVPTGSALDNRKTHNDSKNDKNCI
VYKRTFELGRDFDSEAIEAESFENGVLTLVIPKKEKLQPRRITVQ*
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mRNA from alignment at ScGOVlb_3404:4363882..4364319+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12361.t1 ID=Gvermi12361.t1|Name=Gvermi12361.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=438bp|location=Sequence derived from alignment at ScGOVlb_3404:4363882..4364319+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTCATGTTCATAGCTCCGTTTTCAATGCCGTCCTTCACTTTCTTCGA
TGTAGAGTCCATGGATTGCAAATCAGAACACAAAGATACTCAGGTGAACG
CTGCTGCTTATACGAAGCGGGCAGATGCTAGAGGAACAACTTTGCAAGTC
GACTTACCTGGCGTTGAAAAAGATCACGTCTCCATCGAAGTAAATGGACG
TCAGCTAATGGTGACAGGAAAAAGGTACAAAGTTCCAACAGGATCTGCAC
TGGATAACAGAAAGACACACAACGATTCCAAGAACGATAAAAATTGTATC
GTATATAAGAGGACGTTCGAGCTCGGCCGTGATTTTGATTCCGAGGCAAT
TGAAGCAGAGAGCTTTGAGAATGGGGTATTAACGCTTGTGATTCCAAAGA
AGGAAAAACTACAGCCGAGAAGAATCACCGTGCAATAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4363882..4364319+

>Gvermi12361.t1 ID=Gvermi12361.t1|Name=Gvermi12361.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=438bp|location=Sequence derived from alignment at ScGOVlb_3404:4363882..4364319+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTCATGTTCATAGCTCCGTTTTCAATGCCGTCCTTCACTTTCTTCGA
TGTAGAGTCCATGGATTGCAAATCAGAACACAAAGATACTCAGGTGAACG
CTGCTGCTTATACGAAGCGGGCAGATGCTAGAGGAACAACTTTGCAAGTC
GACTTACCTGGCGTTGAAAAAGATCACGTCTCCATCGAAGTAAATGGACG
TCAGCTAATGGTGACAGGAAAAAGGTACAAAGTTCCAACAGGATCTGCAC
TGGATAACAGAAAGACACACAACGATTCCAAGAACGATAAAAATTGTATC
GTATATAAGAGGACGTTCGAGCTCGGCCGTGATTTTGATTCCGAGGCAAT
TGAAGCAGAGAGCTTTGAGAATGGGGTATTAACGCTTGTGATTCCAAAGA
AGGAAAAACTACAGCCGAGAAGAATCACCGTGCAATAA
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