Gvermi12358.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12358.t1
Unique NameGvermi12358.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length167
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4335808..4336308 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1121926.AXWO01000007_gene164
PFAMsDUF1775
Max annot lvl201174|Actinobacteria
Evalue3.72e-10
EggNOG OGsCOG4549@1|root,COG4549@2|Bacteria,2GN9H@201174|Actinobacteria,4F06J@85014|Glycomycetales
DescriptionDomain of unkown function (DUF1775)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12358Gvermi12358Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4335808..4336308 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12358.t1.start1Gvermi12358.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4335808..4335810 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12358.t1.CDS1Gvermi12358.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4335808..4336308 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12358.t1.exon1Gvermi12358.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4335808..4336308 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12358.t1.stop1Gvermi12358.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4336306..4336308 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12358.t1Gvermi12358.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4335808..4336308 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12358.t1 ID=Gvermi12358.t1|Name=Gvermi12358.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=167bp
MVTKLVVAQLLLCSVLVLAHVTITPERIPAGKSSIIQIRVSHDCGDDTIG
TTNFTVVMPMKMGVTVEQDASWTVILNKDPEDKDHITSITYLGFLPDGFY
KLFGLRIRVAKEQAGSQLFFPSYQDCHNQGTSIAWDMIPSCDAHGGGELR
YPAPHVNVTAHEGSGH*
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spliced messenger RNA

>Gvermi12358.t1 ID=Gvermi12358.t1|Name=Gvermi12358.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=501bp|location=Sequence derived from alignment at ScGOVlb_3404:4335808..4336308+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTACGAAACTAGTTGTCGCTCAGCTCCTGCTATGTTCAGTGCTCGT
ATTAGCACACGTAACAATCACACCAGAGCGAATCCCAGCTGGAAAGTCGT
CAATCATTCAGATAAGAGTATCACACGACTGCGGGGATGACACGATTGGC
ACAACGAATTTCACTGTGGTGATGCCAATGAAAATGGGGGTAACCGTGGA
GCAGGACGCATCGTGGACGGTGATCTTGAACAAAGATCCCGAAGACAAAG
ATCATATAACGTCGATCACTTATCTTGGGTTTTTACCCGACGGTTTTTAT
AAGCTGTTTGGACTTCGTATACGTGTTGCAAAGGAGCAGGCTGGAAGTCA
ATTATTCTTCCCGAGCTATCAGGACTGCCACAATCAAGGAACTTCCATTG
CTTGGGATATGATCCCTTCGTGCGATGCGCATGGTGGTGGTGAGCTTAGG
TACCCCGCGCCACATGTGAATGTGACAGCGCACGAAGGCTCCGGTCACTG
A
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protein sequence of Gvermi12358.t1

>Gvermi12358.t1 ID=Gvermi12358.t1|Name=Gvermi12358.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=167bp
MVTKLVVAQLLLCSVLVLAHVTITPERIPAGKSSIIQIRVSHDCGDDTIG
TTNFTVVMPMKMGVTVEQDASWTVILNKDPEDKDHITSITYLGFLPDGFY
KLFGLRIRVAKEQAGSQLFFPSYQDCHNQGTSIAWDMIPSCDAHGGGELR
YPAPHVNVTAHEGSGH*
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mRNA from alignment at ScGOVlb_3404:4335808..4336308+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12358.t1 ID=Gvermi12358.t1|Name=Gvermi12358.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=501bp|location=Sequence derived from alignment at ScGOVlb_3404:4335808..4336308+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTTACGAAACTAGTTGTCGCTCAGCTCCTGCTATGTTCAGTGCTCGT
ATTAGCACACGTAACAATCACACCAGAGCGAATCCCAGCTGGAAAGTCGT
CAATCATTCAGATAAGAGTATCACACGACTGCGGGGATGACACGATTGGC
ACAACGAATTTCACTGTGGTGATGCCAATGAAAATGGGGGTAACCGTGGA
GCAGGACGCATCGTGGACGGTGATCTTGAACAAAGATCCCGAAGACAAAG
ATCATATAACGTCGATCACTTATCTTGGGTTTTTACCCGACGGTTTTTAT
AAGCTGTTTGGACTTCGTATACGTGTTGCAAAGGAGCAGGCTGGAAGTCA
ATTATTCTTCCCGAGCTATCAGGACTGCCACAATCAAGGAACTTCCATTG
CTTGGGATATGATCCCTTCGTGCGATGCGCATGGTGGTGGTGAGCTTAGG
TACCCCGCGCCACATGTGAATGTGACAGCGCACGAAGGCTCCGGTCACTG
A
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4335808..4336308+

>Gvermi12358.t1 ID=Gvermi12358.t1|Name=Gvermi12358.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=501bp|location=Sequence derived from alignment at ScGOVlb_3404:4335808..4336308+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTTACGAAACTAGTTGTCGCTCAGCTCCTGCTATGTTCAGTGCTCGT
ATTAGCACACGTAACAATCACACCAGAGCGAATCCCAGCTGGAAAGTCGT
CAATCATTCAGATAAGAGTATCACACGACTGCGGGGATGACACGATTGGC
ACAACGAATTTCACTGTGGTGATGCCAATGAAAATGGGGGTAACCGTGGA
GCAGGACGCATCGTGGACGGTGATCTTGAACAAAGATCCCGAAGACAAAG
ATCATATAACGTCGATCACTTATCTTGGGTTTTTACCCGACGGTTTTTAT
AAGCTGTTTGGACTTCGTATACGTGTTGCAAAGGAGCAGGCTGGAAGTCA
ATTATTCTTCCCGAGCTATCAGGACTGCCACAATCAAGGAACTTCCATTG
CTTGGGATATGATCCCTTCGTGCGATGCGCATGGTGGTGGTGAGCTTAGG
TACCCCGCGCCACATGTGAATGTGACAGCGCACGAAGGCTCCGGTCACTG
A
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