Gvermi12356.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12356.t1
Unique NameGvermi12356.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length273
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4326219..4327117 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12356Gvermi12356Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4326219..4327117 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12356.t1Gvermi12356.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4326219..4327117 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12356.t1.stop1Gvermi12356.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4326219..4326221 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12356.t1.CDS1Gvermi12356.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4326219..4326939 -
Gvermi12356.t1.CDS2Gvermi12356.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4327020..4327117 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12356.t1.exon1Gvermi12356.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4326219..4326939 -
Gvermi12356.t1.exon2Gvermi12356.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4327020..4327117 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12356.t1.intron1Gvermi12356.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 4326940..4327019 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12356.t1.start1Gvermi12356.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4327115..4327117 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12356.t1 ID=Gvermi12356.t1|Name=Gvermi12356.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=273bp
MAAKASDRILRTGQFKYASGFETEKYFIVVINGILRKHAVDRASLLSQAW
VSDKSRSERLLFQGTSSAICFRESESNIMLTQVIATRKRKRDKTDHTPNL
TRLRDFTRVSRSHHPYPSWRQPLKSNEWTKERNPLEFCTQLPNRNDPQYF
KQIAAYMFRRMAKFQWQNGLNIMTWDRDLVRISESYCRDTIELGAHIEGE
KYSPMLFEVKVTAENEGRYAESLLGQLTRSRDIFRQMRKCSHVGLAIYGN
EDRIVLVVLFNSRRFNQKLLVY*
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spliced messenger RNA

>Gvermi12356.t1 ID=Gvermi12356.t1|Name=Gvermi12356.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=819bp|location=Sequence derived from alignment at ScGOVlb_3404:4326219..4327117- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGCAAAGGCGAGCGATCGAATTTTGCGGACTGGTCAATTTAAGTA
CGCTTCTGGATTCGAGACAGAAAAATACTTCATCGTTGTCATTAATGGTA
TTCTTCGAAAACACGCGGTAGATCGTGCGAGTCTTCTGTCTCAGGCATGG
GTTTCCGATAAGAGTCGTTCAGAAAGGCTTTTATTTCAAGGTACGTCATC
TGCTATTTGTTTTCGAGAATCTGAGAGCAACATCATGCTCACTCAAGTTA
TAGCAACAAGAAAGCGAAAACGAGACAAAACAGATCACACTCCCAATCTT
ACCCGACTGCGTGATTTCACTCGTGTTTCCAGAAGTCACCACCCATATCC
TAGTTGGAGACAGCCGTTAAAATCGAACGAATGGACGAAAGAGCGTAATC
CTTTAGAATTTTGCACACAACTTCCAAATAGAAATGATCCACAATATTTC
AAACAGATTGCAGCTTACATGTTTAGAAGAATGGCTAAATTTCAATGGCA
AAATGGTTTGAATATCATGACGTGGGACAGAGATCTGGTTCGAATATCAG
AAAGCTATTGCCGAGATACAATTGAGCTCGGGGCGCATATTGAAGGAGAA
AAGTATAGCCCAATGCTTTTTGAGGTTAAAGTAACAGCAGAAAATGAAGG
GCGATACGCAGAGTCACTGCTCGGGCAACTTACTCGTTCAAGGGACATTT
TTCGCCAAATGAGGAAGTGCAGTCATGTAGGTCTAGCAATCTACGGAAAT
GAGGACCGAATAGTGCTAGTTGTATTGTTCAACAGTCGTCGATTTAATCA
AAAACTTTTGGTTTACTAA
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protein sequence of Gvermi12356.t1

>Gvermi12356.t1 ID=Gvermi12356.t1|Name=Gvermi12356.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=273bp
MAAKASDRILRTGQFKYASGFETEKYFIVVINGILRKHAVDRASLLSQAW
VSDKSRSERLLFQGTSSAICFRESESNIMLTQVIATRKRKRDKTDHTPNL
TRLRDFTRVSRSHHPYPSWRQPLKSNEWTKERNPLEFCTQLPNRNDPQYF
KQIAAYMFRRMAKFQWQNGLNIMTWDRDLVRISESYCRDTIELGAHIEGE
KYSPMLFEVKVTAENEGRYAESLLGQLTRSRDIFRQMRKCSHVGLAIYGN
EDRIVLVVLFNSRRFNQKLLVY*
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mRNA from alignment at ScGOVlb_3404:4326219..4327117-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12356.t1 ID=Gvermi12356.t1|Name=Gvermi12356.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=899bp|location=Sequence derived from alignment at ScGOVlb_3404:4326219..4327117- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCAGCAAAGGCGAGCGATCGAATTTTGCGGACTGGTCAATTTAAGTA
CGCTTCTGGATTCGAGACAGAAAAATACTTCATCGTTGTCATTAATGGGT
ATGTAATATTCTTTTTTCGCAAGTTTAGTATATGTTACATGTCTCAGAAG
GGCTAACTGTGACTTCTTTTTTATGCAGTATTCTTCGAAAACACGCGGTA
GATCGTGCGAGTCTTCTGTCTCAGGCATGGGTTTCCGATAAGAGTCGTTC
AGAAAGGCTTTTATTTCAAGGTACGTCATCTGCTATTTGTTTTCGAGAAT
CTGAGAGCAACATCATGCTCACTCAAGTTATAGCAACAAGAAAGCGAAAA
CGAGACAAAACAGATCACACTCCCAATCTTACCCGACTGCGTGATTTCAC
TCGTGTTTCCAGAAGTCACCACCCATATCCTAGTTGGAGACAGCCGTTAA
AATCGAACGAATGGACGAAAGAGCGTAATCCTTTAGAATTTTGCACACAA
CTTCCAAATAGAAATGATCCACAATATTTCAAACAGATTGCAGCTTACAT
GTTTAGAAGAATGGCTAAATTTCAATGGCAAAATGGTTTGAATATCATGA
CGTGGGACAGAGATCTGGTTCGAATATCAGAAAGCTATTGCCGAGATACA
ATTGAGCTCGGGGCGCATATTGAAGGAGAAAAGTATAGCCCAATGCTTTT
TGAGGTTAAAGTAACAGCAGAAAATGAAGGGCGATACGCAGAGTCACTGC
TCGGGCAACTTACTCGTTCAAGGGACATTTTTCGCCAAATGAGGAAGTGC
AGTCATGTAGGTCTAGCAATCTACGGAAATGAGGACCGAATAGTGCTAGT
TGTATTGTTCAACAGTCGTCGATTTAATCAAAAACTTTTGGTTTACTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4326219..4327117-

>Gvermi12356.t1 ID=Gvermi12356.t1|Name=Gvermi12356.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=819bp|location=Sequence derived from alignment at ScGOVlb_3404:4326219..4327117- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCAGCAAAGGCGAGCGATCGAATTTTGCGGACTGGTCAATTTAAGTA
CGCTTCTGGATTCGAGACAGAAAAATACTTCATCGTTGTCATTAATGGTA
TTCTTCGAAAACACGCGGTAGATCGTGCGAGTCTTCTGTCTCAGGCATGG
GTTTCCGATAAGAGTCGTTCAGAAAGGCTTTTATTTCAAGGTACGTCATC
TGCTATTTGTTTTCGAGAATCTGAGAGCAACATCATGCTCACTCAAGTTA
TAGCAACAAGAAAGCGAAAACGAGACAAAACAGATCACACTCCCAATCTT
ACCCGACTGCGTGATTTCACTCGTGTTTCCAGAAGTCACCACCCATATCC
TAGTTGGAGACAGCCGTTAAAATCGAACGAATGGACGAAAGAGCGTAATC
CTTTAGAATTTTGCACACAACTTCCAAATAGAAATGATCCACAATATTTC
AAACAGATTGCAGCTTACATGTTTAGAAGAATGGCTAAATTTCAATGGCA
AAATGGTTTGAATATCATGACGTGGGACAGAGATCTGGTTCGAATATCAG
AAAGCTATTGCCGAGATACAATTGAGCTCGGGGCGCATATTGAAGGAGAA
AAGTATAGCCCAATGCTTTTTGAGGTTAAAGTAACAGCAGAAAATGAAGG
GCGATACGCAGAGTCACTGCTCGGGCAACTTACTCGTTCAAGGGACATTT
TTCGCCAAATGAGGAAGTGCAGTCATGTAGGTCTAGCAATCTACGGAAAT
GAGGACCGAATAGTGCTAGTTGTATTGTTCAACAGTCGTCGATTTAATCA
AAAACTTTTGGTTTACTAA
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