Gvermi12349.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12349.t1
Unique NameGvermi12349.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length119
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4302815..4303289 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog109760.SPPG_05403T0
Preferred nameRPL31B
PFAMsRibosomal_L31e
Max annot lvl4751|Fungi
KEGG koko:K02910
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
GOsGO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006450,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065007,GO:0065008,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Evalue5.93e-45
EggNOG OGsCOG2097@1|root,KOG0893@2759|Eukaryota,3A3JD@33154|Opisthokonta,3P4B8@4751|Fungi
Descriptionribosomal protein
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12349Gvermi12349Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4302815..4303289 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12349.t1Gvermi12349.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4302815..4303289 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12349.t1.CDS1Gvermi12349.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4302815..4302817 +
Gvermi12349.t1.CDS2Gvermi12349.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4302936..4303289 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12349.t1.exon1Gvermi12349.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4302815..4302817 +
Gvermi12349.t1.exon2Gvermi12349.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4302936..4303289 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12349.t1.start1Gvermi12349.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4302815..4302817 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12349.t1.intron1Gvermi12349.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 4302818..4302935 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12349.t1.stop1Gvermi12349.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4303287..4303289 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12349.t1 ID=Gvermi12349.t1|Name=Gvermi12349.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=119bp
MAKDRKPRGSEVVTRDYTIHLHKRLYRYGFKRKAPRAIKVIREFATRTMG
TTDVRVDPKLNKEVWRTGVRNVPYRIRVRLSRKRNDDEDAKEPLYTLASF
VPVSNPHCKGLQTTTIEE*
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spliced messenger RNA

>Gvermi12349.t1 ID=Gvermi12349.t1|Name=Gvermi12349.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=357bp|location=Sequence derived from alignment at ScGOVlb_3404:4302815..4303289+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAAAAGACCGAAAGCCACGCGGATCTGAGGTAGTCACACGGGACTA
CACTATCCACCTACACAAGCGACTGTATCGATATGGTTTCAAGAGGAAGG
CTCCGCGCGCCATCAAAGTCATTCGCGAGTTTGCCACTAGGACGATGGGA
ACCACTGATGTGCGCGTCGATCCGAAGCTGAACAAGGAAGTCTGGAGGAC
GGGTGTTCGGAACGTGCCGTACCGCATCCGCGTTCGTCTGTCCCGGAAGC
GCAACGACGACGAGGATGCGAAGGAGCCTCTTTACACACTGGCCTCCTTT
GTGCCCGTTTCCAACCCGCACTGCAAGGGTTTGCAGACTACGACTATCGA
GGAGTAA
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protein sequence of Gvermi12349.t1

>Gvermi12349.t1 ID=Gvermi12349.t1|Name=Gvermi12349.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=119bp
MAKDRKPRGSEVVTRDYTIHLHKRLYRYGFKRKAPRAIKVIREFATRTMG
TTDVRVDPKLNKEVWRTGVRNVPYRIRVRLSRKRNDDEDAKEPLYTLASF
VPVSNPHCKGLQTTTIEE*
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mRNA from alignment at ScGOVlb_3404:4302815..4303289+

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12349.t1 ID=Gvermi12349.t1|Name=Gvermi12349.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=475bp|location=Sequence derived from alignment at ScGOVlb_3404:4302815..4303289+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTAAGTTATTGGCGATCACAACCCCAGCTCTCTCCTGTTGAGAGAAG
TGCTTCCCAACTAGCCGCTGTCCTGAAACGCAACATCACGTCTAACCACG
AGCACCTGCCACTATGCATAGGCAAAAGACCGAAAGCCACGCGGATCTGA
GGTAGTCACACGGGACTACACTATCCACCTACACAAGCGACTGTATCGAT
ATGGTTTCAAGAGGAAGGCTCCGCGCGCCATCAAAGTCATTCGCGAGTTT
GCCACTAGGACGATGGGAACCACTGATGTGCGCGTCGATCCGAAGCTGAA
CAAGGAAGTCTGGAGGACGGGTGTTCGGAACGTGCCGTACCGCATCCGCG
TTCGTCTGTCCCGGAAGCGCAACGACGACGAGGATGCGAAGGAGCCTCTT
TACACACTGGCCTCCTTTGTGCCCGTTTCCAACCCGCACTGCAAGGGTTT
GCAGACTACGACTATCGAGGAGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4302815..4303289+

>Gvermi12349.t1 ID=Gvermi12349.t1|Name=Gvermi12349.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=357bp|location=Sequence derived from alignment at ScGOVlb_3404:4302815..4303289+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCAAAAGACCGAAAGCCACGCGGATCTGAGGTAGTCACACGGGACTA
CACTATCCACCTACACAAGCGACTGTATCGATATGGTTTCAAGAGGAAGG
CTCCGCGCGCCATCAAAGTCATTCGCGAGTTTGCCACTAGGACGATGGGA
ACCACTGATGTGCGCGTCGATCCGAAGCTGAACAAGGAAGTCTGGAGGAC
GGGTGTTCGGAACGTGCCGTACCGCATCCGCGTTCGTCTGTCCCGGAAGC
GCAACGACGACGAGGATGCGAAGGAGCCTCTTTACACACTGGCCTCCTTT
GTGCCCGTTTCCAACCCGCACTGCAAGGGTTTGCAGACTACGACTATCGA
GGAGTAA
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