Gvermi12345.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12345.t1
Unique Name	Gvermi12345.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	702

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:4295395..4297500 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12345	Gvermi12345	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3404 4295395..4297500 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12345.t1.start1	Gvermi12345.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_3404 4295395..4295397 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12345.t1.CDS1	Gvermi12345.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3404 4295395..4297500 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12345.t1.exon1	Gvermi12345.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3404 4295395..4297500 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12345.t1.stop1	Gvermi12345.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_3404 4297498..4297500 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12345.t1	Gvermi12345.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3404 4295395..4297500 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3404:4295395..4297500+
coding sequence from alignment at ScGOVlb_3404:4295395..4297500+

mRNA sequence

>Gvermi12345.t1 ID=Gvermi12345.t1|Name=Gvermi12345.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=702bp
MHVRELAARFERPVPTQTTSSSNVVPVHQLSGSSVSELCERFEQTVIHQQ
KDVHRNDSIPIPNSDKLQLSSHPSAVSNEAPLLSAPTIATTPVTPLASQT
ADEISAILPVFDAPSHEDDQHHSAPISDAFPIANMQTALPPQKPIEETRD
QVRAEQQHSELKQSQRIPSEFTEASSTHSQSTSSGSTVPPISDFVPQSID
DVGIIPDVSEGELDDIDGIERVEDYDSQDENQSSHTSSDNQNDTFQRAET
LSDPHVSYRTEGGESLHIIDGSYSHHESDGTNSNSSDYEGDKNSEEADNI
IFSDRASTLIRQDQSHQTYSGYSCSPDTAPMSSFHTSTIHSQVLFSRATT
YSASEEYKSTNNDFIPASKHGSPMVQNNSNARKTLQAEMNASSNPSSGFP
LGASVPPAPSPPSSVLALEDSTSSVRPNHVLDEVASEPEAESEVYSQNRI
CPQGSIKRLPKAKVLIARKRGQSVNLDTRTTSGDSDRPERNAAASADEIG
RRRLVREISNPGDFFAGQVSMVQRTSDAYFREPEEAAEECDSPPSPRRKP
FGDLSTFHRKQLEQNPFRKRYDEYIDAEDFDRTPESQESSTSESNLLGEN
GASKMKYRPRMKLFGRKNAVVSKLEKDRLRAKRHEKRKEDIARRSTILSG
AIDRVSMAADPWIDFITDAKAMPVPEKTRGSLRRAVKRLFGGKGKQSLIK
E*

spliced messenger RNA

>Gvermi12345.t1 ID=Gvermi12345.t1|Name=Gvermi12345.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2106bp|location=Sequence derived from alignment at ScGOVlb_3404:4295395..4297500+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACGTCAGAGAGCTTGCTGCGCGCTTTGAGCGCCCCGTTCCCACGCA
AACAACCTCCTCCTCCAACGTCGTTCCGGTGCATCAGCTGTCAGGCTCGT
CCGTATCAGAATTATGCGAACGTTTTGAGCAAACCGTTATTCACCAACAA
AAAGATGTTCATCGCAATGACTCCATTCCTATACCAAATTCGGATAAGCT
ACAACTCTCGTCACACCCATCTGCTGTGAGCAACGAAGCGCCTCTTCTTT
CTGCCCCTACCATTGCCACAACTCCGGTGACTCCGTTGGCATCACAGACC
GCAGACGAAATTTCTGCCATCTTGCCAGTTTTTGACGCCCCATCCCATGA
AGACGACCAACATCATTCTGCACCAATCAGTGATGCATTTCCAATCGCAA
ATATGCAAACCGCGCTTCCTCCTCAAAAGCCAATCGAAGAGACTCGGgac
caggtcagagcagagcagcagcacagcGAACTGAAGCAATCACAACGCAT
ACCCTCTGAGTTTACTGAAGCTTCCTCGACACACTCGCAATCAACATCAT
CGGGCAGCACCGTTCCTCCAATCTCAGACTTTGTCCCTCAATCAATTGAT
GATGTAGGAATCATTCCGGATGTTAGCGAAGGCGAATTGGACGATATTGA
CGGCATTGAACGAGTGGAAGATTATGACTCACAAGACGAAAATCAATCCT
CCCACACCTCTTCTGACAATCAAAATGATACGTTTCAACGTGCGGAGACT
CTAAGCGATCCACATGTATCATATCGGACCGAAGGAGGGGAGTCATTGCA
CATAATTGATGGTTCATACTCACATCATGAGAGCGATGGTACAAATAGTA
ATAGTAGCGATTACGAAGGCGACAAGAATAGCGAGGAAGCCGACAACATC
ATTTTCTCAGACCGTGCAAGTACTTTGATAAGACAGGATCAATCGCACCA
AACGTACAGCGGCTATTCTTGTAGTCCTGACACCGCTCCTATGTCTTCGT
TTCACACTTCTACTATACATTCACAAGTACTGTTTTCGAGGGCAACTACA
TACTCCGCGAGTGAAGAATATAAGAGCACTAACAACGATTTTATACCTGC
TTCGAAACATGGGTCACCTATGGTTCAAAACAACTCTAATGCGCGAAAAA
CTTTACAAGCAGAAATGAACGCATCATCCAACCCAAGTAGTGGCTTTCCT
CTAGGGGCCAGTGTACCCCCGGCACCATCCCCTCCGTCGTCAGTGCTCGC
GCTCGAGGACAGCACCTCTTCGGTGAGACCAAATCATGTTCTGGACGAAG
TTGCTTCTGAACCGGAAGCGGAATCTGAAGTATACAGTCAAAACCGCATT
TGTCCACAGGGTTCTATCAAACGCCTTCCGAAAGCAAAAGTATTGATAGC
AAGGAAAAGGGGTCAGAGTGTCAATTTAGACACAAGAACTACAAGTGGTG
ATTCAGACCGGCCAGAAAGGAATGCGGCGGCCTCAGCGGACGAAATTGGA
CGACGGCGGCTGGTCCGCGAGATTTCGAACCCTGGAGATTTCTTCGCAGG
TCAAGTGAGCATGGTACAGCGAACATCGGATGCGTATTTCCGGGAGCCAG
AAGAGGCAGCGGAAGAATGTGACTCACCTCCTTCCCCTAGACGGAAGCCG
TTTGGAGACTTGAGCACATTTCATCGAAAACAGTTGGAGCAAAACCCTTT
TCGGAAGCGGTACGATGAATACATCGATGCTGAAGATTTTGACCGAACGC
CGGAGTCTCAAGAGTCCAGTACCTCTGAGTCTAATCTGCTTGGGGAGAAC
GGAGCAAGCAAAATGAAGTATCGCCCTCGAATGAAATTATTTGGGAGGAA
AAACGCTGTTGTCAGCAAACTGGAGAAGGATCGGTTACGAGCAAAGCGCC
ACGAGAAACGAAAGGAGGATATTGCACGTCGGAGCACTATTCTGAGTGGG
GCTATAGATCGGGTTTCGATGGCTGCTGACCCTTGGATCGACTTCATAAC
TGACGCAAAGGCCATGCCTGTTCCTGAAAAGACACGAGGCTCGCTGAGGC
GCGCTGTGAAGAGATTATTTGGGGGTAAGGGAAAGCAAAGCTTAATCAAA
GAGTAA

protein sequence of Gvermi12345.t1

>Gvermi12345.t1 ID=Gvermi12345.t1|Name=Gvermi12345.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=702bp
MHVRELAARFERPVPTQTTSSSNVVPVHQLSGSSVSELCERFEQTVIHQQ
KDVHRNDSIPIPNSDKLQLSSHPSAVSNEAPLLSAPTIATTPVTPLASQT
ADEISAILPVFDAPSHEDDQHHSAPISDAFPIANMQTALPPQKPIEETRD
QVRAEQQHSELKQSQRIPSEFTEASSTHSQSTSSGSTVPPISDFVPQSID
DVGIIPDVSEGELDDIDGIERVEDYDSQDENQSSHTSSDNQNDTFQRAET
LSDPHVSYRTEGGESLHIIDGSYSHHESDGTNSNSSDYEGDKNSEEADNI
IFSDRASTLIRQDQSHQTYSGYSCSPDTAPMSSFHTSTIHSQVLFSRATT
YSASEEYKSTNNDFIPASKHGSPMVQNNSNARKTLQAEMNASSNPSSGFP
LGASVPPAPSPPSSVLALEDSTSSVRPNHVLDEVASEPEAESEVYSQNRI
CPQGSIKRLPKAKVLIARKRGQSVNLDTRTTSGDSDRPERNAAASADEIG
RRRLVREISNPGDFFAGQVSMVQRTSDAYFREPEEAAEECDSPPSPRRKP
FGDLSTFHRKQLEQNPFRKRYDEYIDAEDFDRTPESQESSTSESNLLGEN
GASKMKYRPRMKLFGRKNAVVSKLEKDRLRAKRHEKRKEDIARRSTILSG
AIDRVSMAADPWIDFITDAKAMPVPEKTRGSLRRAVKRLFGGKGKQSLIK
E*

mRNA from alignment at ScGOVlb_3404:4295395..4297500+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12345.t1 ID=Gvermi12345.t1|Name=Gvermi12345.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2106bp|location=Sequence derived from alignment at ScGOVlb_3404:4295395..4297500+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCACGTCAGAGAGCTTGCTGCGCGCTTTGAGCGCCCCGTTCCCACGCA
AACAACCTCCTCCTCCAACGTCGTTCCGGTGCATCAGCTGTCAGGCTCGT
CCGTATCAGAATTATGCGAACGTTTTGAGCAAACCGTTATTCACCAACAA
AAAGATGTTCATCGCAATGACTCCATTCCTATACCAAATTCGGATAAGCT
ACAACTCTCGTCACACCCATCTGCTGTGAGCAACGAAGCGCCTCTTCTTT
CTGCCCCTACCATTGCCACAACTCCGGTGACTCCGTTGGCATCACAGACC
GCAGACGAAATTTCTGCCATCTTGCCAGTTTTTGACGCCCCATCCCATGA
AGACGACCAACATCATTCTGCACCAATCAGTGATGCATTTCCAATCGCAA
ATATGCAAACCGCGCTTCCTCCTCAAAAGCCAATCGAAGAGACTCGGgac
caggtcagagcagagcagcagcacagcGAACTGAAGCAATCACAACGCAT
ACCCTCTGAGTTTACTGAAGCTTCCTCGACACACTCGCAATCAACATCAT
CGGGCAGCACCGTTCCTCCAATCTCAGACTTTGTCCCTCAATCAATTGAT
GATGTAGGAATCATTCCGGATGTTAGCGAAGGCGAATTGGACGATATTGA
CGGCATTGAACGAGTGGAAGATTATGACTCACAAGACGAAAATCAATCCT
CCCACACCTCTTCTGACAATCAAAATGATACGTTTCAACGTGCGGAGACT
CTAAGCGATCCACATGTATCATATCGGACCGAAGGAGGGGAGTCATTGCA
CATAATTGATGGTTCATACTCACATCATGAGAGCGATGGTACAAATAGTA
ATAGTAGCGATTACGAAGGCGACAAGAATAGCGAGGAAGCCGACAACATC
ATTTTCTCAGACCGTGCAAGTACTTTGATAAGACAGGATCAATCGCACCA
AACGTACAGCGGCTATTCTTGTAGTCCTGACACCGCTCCTATGTCTTCGT
TTCACACTTCTACTATACATTCACAAGTACTGTTTTCGAGGGCAACTACA
TACTCCGCGAGTGAAGAATATAAGAGCACTAACAACGATTTTATACCTGC
TTCGAAACATGGGTCACCTATGGTTCAAAACAACTCTAATGCGCGAAAAA
CTTTACAAGCAGAAATGAACGCATCATCCAACCCAAGTAGTGGCTTTCCT
CTAGGGGCCAGTGTACCCCCGGCACCATCCCCTCCGTCGTCAGTGCTCGC
GCTCGAGGACAGCACCTCTTCGGTGAGACCAAATCATGTTCTGGACGAAG
TTGCTTCTGAACCGGAAGCGGAATCTGAAGTATACAGTCAAAACCGCATT
TGTCCACAGGGTTCTATCAAACGCCTTCCGAAAGCAAAAGTATTGATAGC
AAGGAAAAGGGGTCAGAGTGTCAATTTAGACACAAGAACTACAAGTGGTG
ATTCAGACCGGCCAGAAAGGAATGCGGCGGCCTCAGCGGACGAAATTGGA
CGACGGCGGCTGGTCCGCGAGATTTCGAACCCTGGAGATTTCTTCGCAGG
TCAAGTGAGCATGGTACAGCGAACATCGGATGCGTATTTCCGGGAGCCAG
AAGAGGCAGCGGAAGAATGTGACTCACCTCCTTCCCCTAGACGGAAGCCG
TTTGGAGACTTGAGCACATTTCATCGAAAACAGTTGGAGCAAAACCCTTT
TCGGAAGCGGTACGATGAATACATCGATGCTGAAGATTTTGACCGAACGC
CGGAGTCTCAAGAGTCCAGTACCTCTGAGTCTAATCTGCTTGGGGAGAAC
GGAGCAAGCAAAATGAAGTATCGCCCTCGAATGAAATTATTTGGGAGGAA
AAACGCTGTTGTCAGCAAACTGGAGAAGGATCGGTTACGAGCAAAGCGCC
ACGAGAAACGAAAGGAGGATATTGCACGTCGGAGCACTATTCTGAGTGGG
GCTATAGATCGGGTTTCGATGGCTGCTGACCCTTGGATCGACTTCATAAC
TGACGCAAAGGCCATGCCTGTTCCTGAAAAGACACGAGGCTCGCTGAGGC
GCGCTGTGAAGAGATTATTTGGGGGTAAGGGAAAGCAAAGCTTAATCAAA
GAGTAA

Coding sequence (CDS) from alignment at ScGOVlb_3404:4295395..4297500+

>Gvermi12345.t1 ID=Gvermi12345.t1|Name=Gvermi12345.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2106bp|location=Sequence derived from alignment at ScGOVlb_3404:4295395..4297500+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCACGTCAGAGAGCTTGCTGCGCGCTTTGAGCGCCCCGTTCCCACGCA
AACAACCTCCTCCTCCAACGTCGTTCCGGTGCATCAGCTGTCAGGCTCGT
CCGTATCAGAATTATGCGAACGTTTTGAGCAAACCGTTATTCACCAACAA
AAAGATGTTCATCGCAATGACTCCATTCCTATACCAAATTCGGATAAGCT
ACAACTCTCGTCACACCCATCTGCTGTGAGCAACGAAGCGCCTCTTCTTT
CTGCCCCTACCATTGCCACAACTCCGGTGACTCCGTTGGCATCACAGACC
GCAGACGAAATTTCTGCCATCTTGCCAGTTTTTGACGCCCCATCCCATGA
AGACGACCAACATCATTCTGCACCAATCAGTGATGCATTTCCAATCGCAA
ATATGCAAACCGCGCTTCCTCCTCAAAAGCCAATCGAAGAGACTCGGgac
caggtcagagcagagcagcagcacagcGAACTGAAGCAATCACAACGCAT
ACCCTCTGAGTTTACTGAAGCTTCCTCGACACACTCGCAATCAACATCAT
CGGGCAGCACCGTTCCTCCAATCTCAGACTTTGTCCCTCAATCAATTGAT
GATGTAGGAATCATTCCGGATGTTAGCGAAGGCGAATTGGACGATATTGA
CGGCATTGAACGAGTGGAAGATTATGACTCACAAGACGAAAATCAATCCT
CCCACACCTCTTCTGACAATCAAAATGATACGTTTCAACGTGCGGAGACT
CTAAGCGATCCACATGTATCATATCGGACCGAAGGAGGGGAGTCATTGCA
CATAATTGATGGTTCATACTCACATCATGAGAGCGATGGTACAAATAGTA
ATAGTAGCGATTACGAAGGCGACAAGAATAGCGAGGAAGCCGACAACATC
ATTTTCTCAGACCGTGCAAGTACTTTGATAAGACAGGATCAATCGCACCA
AACGTACAGCGGCTATTCTTGTAGTCCTGACACCGCTCCTATGTCTTCGT
TTCACACTTCTACTATACATTCACAAGTACTGTTTTCGAGGGCAACTACA
TACTCCGCGAGTGAAGAATATAAGAGCACTAACAACGATTTTATACCTGC
TTCGAAACATGGGTCACCTATGGTTCAAAACAACTCTAATGCGCGAAAAA
CTTTACAAGCAGAAATGAACGCATCATCCAACCCAAGTAGTGGCTTTCCT
CTAGGGGCCAGTGTACCCCCGGCACCATCCCCTCCGTCGTCAGTGCTCGC
GCTCGAGGACAGCACCTCTTCGGTGAGACCAAATCATGTTCTGGACGAAG
TTGCTTCTGAACCGGAAGCGGAATCTGAAGTATACAGTCAAAACCGCATT
TGTCCACAGGGTTCTATCAAACGCCTTCCGAAAGCAAAAGTATTGATAGC
AAGGAAAAGGGGTCAGAGTGTCAATTTAGACACAAGAACTACAAGTGGTG
ATTCAGACCGGCCAGAAAGGAATGCGGCGGCCTCAGCGGACGAAATTGGA
CGACGGCGGCTGGTCCGCGAGATTTCGAACCCTGGAGATTTCTTCGCAGG
TCAAGTGAGCATGGTACAGCGAACATCGGATGCGTATTTCCGGGAGCCAG
AAGAGGCAGCGGAAGAATGTGACTCACCTCCTTCCCCTAGACGGAAGCCG
TTTGGAGACTTGAGCACATTTCATCGAAAACAGTTGGAGCAAAACCCTTT
TCGGAAGCGGTACGATGAATACATCGATGCTGAAGATTTTGACCGAACGC
CGGAGTCTCAAGAGTCCAGTACCTCTGAGTCTAATCTGCTTGGGGAGAAC
GGAGCAAGCAAAATGAAGTATCGCCCTCGAATGAAATTATTTGGGAGGAA
AAACGCTGTTGTCAGCAAACTGGAGAAGGATCGGTTACGAGCAAAGCGCC
ACGAGAAACGAAAGGAGGATATTGCACGTCGGAGCACTATTCTGAGTGGG
GCTATAGATCGGGTTTCGATGGCTGCTGACCCTTGGATCGACTTCATAAC
TGACGCAAAGGCCATGCCTGTTCCTGAAAAGACACGAGGCTCGCTGAGGC
GCGCTGTGAAGAGATTATTTGGGGGTAAGGGAAAGCAAAGCTTAATCAAA
GAGTAA