Gvermi12344.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12344.t1
Unique NameGvermi12344.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length268
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4294325..4295128 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog110663.KI911558_gene2426
PFAMsPhycobilisome
Max annot lvl1117|Cyanobacteria
Evalue4.03e-16
EggNOG OGs2C021@1|root,2ZCG9@2|Bacteria,1G50B@1117|Cyanobacteria,1H05F@1129|Synechococcus
DescriptionPhycobilisome protein
COG categoryC
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12344Gvermi12344Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4294325..4295128 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12344.t1.start1Gvermi12344.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4294325..4294327 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12344.t1.CDS1Gvermi12344.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4294325..4295128 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12344.t1.exon1Gvermi12344.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4294325..4295128 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12344.t1.stop1Gvermi12344.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4295126..4295128 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12344.t1Gvermi12344.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4294325..4295128 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12344.t1 ID=Gvermi12344.t1|Name=Gvermi12344.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=268bp
MHILEVQSVKHTATPISQRCVSIPQHTMVPPLVIAFTPSISLQLRCPPPL
QYIPNNRAVCLVRSVASNTRVPRPAPPVAAQPITPRAKQLIELQSQNPVF
DPHLLNEPLGPIFSQLQAQSPPAFVRSWHVADTASVACCIAIDTIAEDAD
QAIEKARAYILRLYPGIDRPGGALWPSQRAVACWRDLSAFARVAAYLVIC
ETGLSPRGLHIMQQIYYEMNVPLEAVRTGVHCVCEQLADRAAHNYDSKAS
RVVRAAFDQLLVYLSAF*
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spliced messenger RNA

>Gvermi12344.t1 ID=Gvermi12344.t1|Name=Gvermi12344.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=804bp|location=Sequence derived from alignment at ScGOVlb_3404:4294325..4295128+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACATCCTCGAAGTGCAGAGCGTAAAGCACACAGCGACACCTATCTC
GCAGCGCTGCGTGTCCATCCCGCAACACACCATGGTTCCACCTCTCGTCA
TCGCTTTCACCCCCTCTATTTCGCTACAGCTTCGCTGTCCGCCGCCATTA
CAATACATCCCAAACAACCGTGCCGTCTGCTTGGTGAGAAGCGTGGCGTC
CAACACACGGGTACCACGCCCCGCCCCTCCGGTCGCCGCCCAACCCATCA
CGCCGCGTGCAAAGCAGTTGATCGAACTACAGAGTCAAAACCCAGTCTTC
GATCCACACTTGCTGAATGAACCCCTTGGCCCTATTTTTTCCCAACTTCA
GGCTCAGTCGCCCCCAGCCTTTGTGCGCTCCTGGCACGTCGCAGACACCG
CGTCTGTGGCCTGCTGCATTGCAATCGACACAATTGCCGAAGACGCGGAC
CAAGCGATTGAAAAGGCCCGCGCCTATATACTGCGCCTCTATCCGGGAAT
TGACCGCCCCGGAGGCGCTCTGTGGCCGTCGCAGAGAGCCGTCGCGTGTT
GGCGCGACCTCTCCGCCTTCGCCCGCGTAGCAGCGTATTTAGTCATATGT
GAAACTGGCCTTTCTCCTCGCGGTTTGCACATCATGCAGCAGATATATTA
CGAAATGAATGTCCCTCTGGAAGCGGTACGAACCGGAGTGCATTGTGTGT
GTGAACAGCTCGCCGACCGTGCCGCACACAACTATGATTCCAAGGCATCC
AGAGTCGTCCGCGCCGCCTTCGACCAGTTGCTAGTGTACCTCTCCGCTTT
CTAA
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protein sequence of Gvermi12344.t1

>Gvermi12344.t1 ID=Gvermi12344.t1|Name=Gvermi12344.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=268bp
MHILEVQSVKHTATPISQRCVSIPQHTMVPPLVIAFTPSISLQLRCPPPL
QYIPNNRAVCLVRSVASNTRVPRPAPPVAAQPITPRAKQLIELQSQNPVF
DPHLLNEPLGPIFSQLQAQSPPAFVRSWHVADTASVACCIAIDTIAEDAD
QAIEKARAYILRLYPGIDRPGGALWPSQRAVACWRDLSAFARVAAYLVIC
ETGLSPRGLHIMQQIYYEMNVPLEAVRTGVHCVCEQLADRAAHNYDSKAS
RVVRAAFDQLLVYLSAF*
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mRNA from alignment at ScGOVlb_3404:4294325..4295128+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12344.t1 ID=Gvermi12344.t1|Name=Gvermi12344.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=804bp|location=Sequence derived from alignment at ScGOVlb_3404:4294325..4295128+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCACATCCTCGAAGTGCAGAGCGTAAAGCACACAGCGACACCTATCTC
GCAGCGCTGCGTGTCCATCCCGCAACACACCATGGTTCCACCTCTCGTCA
TCGCTTTCACCCCCTCTATTTCGCTACAGCTTCGCTGTCCGCCGCCATTA
CAATACATCCCAAACAACCGTGCCGTCTGCTTGGTGAGAAGCGTGGCGTC
CAACACACGGGTACCACGCCCCGCCCCTCCGGTCGCCGCCCAACCCATCA
CGCCGCGTGCAAAGCAGTTGATCGAACTACAGAGTCAAAACCCAGTCTTC
GATCCACACTTGCTGAATGAACCCCTTGGCCCTATTTTTTCCCAACTTCA
GGCTCAGTCGCCCCCAGCCTTTGTGCGCTCCTGGCACGTCGCAGACACCG
CGTCTGTGGCCTGCTGCATTGCAATCGACACAATTGCCGAAGACGCGGAC
CAAGCGATTGAAAAGGCCCGCGCCTATATACTGCGCCTCTATCCGGGAAT
TGACCGCCCCGGAGGCGCTCTGTGGCCGTCGCAGAGAGCCGTCGCGTGTT
GGCGCGACCTCTCCGCCTTCGCCCGCGTAGCAGCGTATTTAGTCATATGT
GAAACTGGCCTTTCTCCTCGCGGTTTGCACATCATGCAGCAGATATATTA
CGAAATGAATGTCCCTCTGGAAGCGGTACGAACCGGAGTGCATTGTGTGT
GTGAACAGCTCGCCGACCGTGCCGCACACAACTATGATTCCAAGGCATCC
AGAGTCGTCCGCGCCGCCTTCGACCAGTTGCTAGTGTACCTCTCCGCTTT
CTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4294325..4295128+

>Gvermi12344.t1 ID=Gvermi12344.t1|Name=Gvermi12344.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=804bp|location=Sequence derived from alignment at ScGOVlb_3404:4294325..4295128+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCACATCCTCGAAGTGCAGAGCGTAAAGCACACAGCGACACCTATCTC
GCAGCGCTGCGTGTCCATCCCGCAACACACCATGGTTCCACCTCTCGTCA
TCGCTTTCACCCCCTCTATTTCGCTACAGCTTCGCTGTCCGCCGCCATTA
CAATACATCCCAAACAACCGTGCCGTCTGCTTGGTGAGAAGCGTGGCGTC
CAACACACGGGTACCACGCCCCGCCCCTCCGGTCGCCGCCCAACCCATCA
CGCCGCGTGCAAAGCAGTTGATCGAACTACAGAGTCAAAACCCAGTCTTC
GATCCACACTTGCTGAATGAACCCCTTGGCCCTATTTTTTCCCAACTTCA
GGCTCAGTCGCCCCCAGCCTTTGTGCGCTCCTGGCACGTCGCAGACACCG
CGTCTGTGGCCTGCTGCATTGCAATCGACACAATTGCCGAAGACGCGGAC
CAAGCGATTGAAAAGGCCCGCGCCTATATACTGCGCCTCTATCCGGGAAT
TGACCGCCCCGGAGGCGCTCTGTGGCCGTCGCAGAGAGCCGTCGCGTGTT
GGCGCGACCTCTCCGCCTTCGCCCGCGTAGCAGCGTATTTAGTCATATGT
GAAACTGGCCTTTCTCCTCGCGGTTTGCACATCATGCAGCAGATATATTA
CGAAATGAATGTCCCTCTGGAAGCGGTACGAACCGGAGTGCATTGTGTGT
GTGAACAGCTCGCCGACCGTGCCGCACACAACTATGATTCCAAGGCATCC
AGAGTCGTCCGCGCCGCCTTCGACCAGTTGCTAGTGTACCTCTCCGCTTT
CTAA
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