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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 130081.XP_005708927.1 |
| PFAMs | CTD_bind |
| Max annot lvl | 2759|Eukaryota |
| KEGG ko | ko:K12879,ko:K14400 |
| KEGG Pathway | ko03013,ko03015,ko03040,map03013,map03015,map03040 |
| KEGG Module | M00405,M00406 |
| Evalue | 3.39e-31 |
| EggNOG OGs | KOG2071@1|root,KOG2071@2759|Eukaryota |
| Description | termination of RNA polymerase II transcription |
| COG category | S |
| BRITE | ko00000,ko00001,ko00002,ko03019,ko03021,ko03041 |
Relationships
This mRNA is a part of the following gene feature(s):
The following stop_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gvermi12340.t1 ID=Gvermi12340.t1|Name=Gvermi12340.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=820bp MFHQSNFVASAPPQPPAARPVPQAPPLDLSSVPPPLQAAAIEYDAFLNDL TWNSKQVINQLTTIAAENLPASDAISSVIEQRIFNAAPSMKLPFLYLMDS IVKNVGRRYLSRFAQNLFHTFTNAYAVAPPTTRISLRRMLGTWPSIYGFE LVNAMTARADQIDAAPYGQLHPHHAPAARLPAQQPPSFFGQQPRVPMPRR VAEPRPQPPIPGLRSQPTRPPVIPPPSQMPPGGGKNLPLRSALRPAPPAP AIIPQPPPEFVELERMMSQVIRNASMGTFPSNHQLFTLNRMISTQLKSPS THLQRNALIRFQQQLREISAAPRHRAAPVSKPPHVSAPPPAPLPPPQVPA PHVGAALSNLLRAMPQGLLHTVQSVAQPSRPLPSPVAVPRPSGAPRRAPD SVAPSYATAASAPLLTFSDLKGMSHHAGVRSLYTDLPHLSKSDGMRFATK EALREHLDWLFRQNRRKRGTKEQVVVGGQSRGWFETLDVFLGKVDPNAKP TNPSVNKKNVADENNDRTVSVVESKSENDICAACHEAFETFWDDDKHAWM LRECTKTDDDELYHVKCMQYTSLADDESADVSAQPQLEVETLKPEKEISK PALTNTSSNPQDPQPNTNSDDLREPSATTFETAAISPTAKEEPREVPQTP LVSQVNVAKPEPNIIARDNQGISHALATPYVNPRKHEPLLVGHADPSDTR GIPMMAMNGIPAGTMTSSVPGQDSTGKVIISKVPKWLAATTGIQVMHLEP ARKDEPTVVSTSPPSGQKRKRGDSESGMYEMGSLNMNIPIVSATSQMSYV DIAEPQAKRQKECVPQSNA* back to topspliced messenger RNA >Gvermi12340.t1 ID=Gvermi12340.t1|Name=Gvermi12340.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2460bp|location=Sequence derived from alignment at ScGOVlb_3404:4272766..4275225- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.
ATGTTCCACCAATCCAACTTCGTCGCTAGCGCACCCCCTCAGCCACCTGC CGCCCGTCCCGTTCCTCAGGCACCCCCTCTTGATCTATCTTCCGTCCCTC CCCCACTGCAGGCCGCTGCCATCGAGTATGACGCCTTTCTCAATGACCTT ACCTGGAATTCCAAACAGGTCATCAACCAACTCACCACAATTGCCGCCGA GAACCTCCCGGCTTCTGATGCCATCAGCTCCGTTATTGAGCAGCGCATTT TCAACGCCGCTCCATCCATGAAGCTTCCATTCCTCTATCTCATGGACTCC ATTGTGAAAAACGTCGGCAGAAGGTATCTCTCGCGTTTTGCGCAGAATCT GTTTCACACCTTCACCAACGCTTACGCCGTCGCCCCGCCAACCACGCGCA TTTCATTGCGCAGAATGCTAGGCACCTGGCCTAGCATCTACGGCTTTGAG CTAGTCAACGCCATGACAGCTCGAGCCGATCAGATTGACGCTGCTCCGTA CGGACAGCTTCATCCGCATCATGCGCCTGCTGCTCGCTTGCCGGCGCAGC AACCCCCCTCATTCTTCGGTCAGCAACCGCGAGTGCCCATGCCGCGTCGC GTCGCCGAACCGCGACCGCAGCCTCCAATACCGGGGCTGCGCTCTCAACC GACTCGCCCGCCCGTCATACCTCCACCTTCTCAAATGCCTCCCGGTGGAG GCAAAAACTTACCTTTACGCTCGGCTTTGCGTCCGGCTCCGCCCGCACCC GCGATCATACCGCAGCCGCCGCCGGAATTTGTGGAGCTGGAACGGATGAT GTCACAGGTAATTAGAAATGCTAGCATGGGAACTTTCCCATCAAACCATC AGTTGTTTACTCTCAACAGGATGATTTCCACCCAGCTCAAGTCCCCTTCC ACCCACCTTCAGCGAAACGCGTTAATACGCTTCCAGCAGCAGCTGCGCGA GATCTCTGCTGCCCCTCGTCACCGCGCTGCGCCTGTTTCCAAGCCTCCTC ATGTCAGCGCTCCCCCTCCCGCGCCCCTTCCGCCTCCCCAAGTCCCTGCC CCCCACGTTGGCGCTGCCCTTTCCAACTTGCTTCGCGCCATGCCTCAAGG GCTGCTCCACACAGTGCAGTCTGTAGCGCAACCTTCTCGCCCTCTCCCTT CCCCAGTCGCCGTGCCCCGACCGTCAGGAGCTCCTCGGCGAGCACCTGAT TCCGTCGCACCGTCTTACGCAACGGCGGCCTCTGCCCCTCTGCTAACATT TTCCGATTTGAAAGGCATGTCTCATCACGCAGGCGTTCGATCCCTGTATA CCGATTTGCCGCACCTTTCCAAGAGCGATGGCATGAGATTCGCCACAAAG GAGGCCCTACGAGAGCATCTTGACTGGCTCTTCCGACAGAATCGTCGAAA GCGGGGCACCAAAGAGCAGGTGGTTGTGGGAGGGCAATCTCGAGGTTGGT TTGAAACGCTGGACGTGTTCTTGGGCAAAGTTGATCCCAATGCTAAACCA ACGAACCCTTCTGTAAATAAGAAAAATGTAGCAGACGAAAACAACGATAG AACCGTGTCTGTTGTTGAATCCAAGTCTGAAAATGACATCTGCGCCGCAT GCCACGAGGCGTTCGAGACCTTTTGGGACGACGACAAACACGCTTGGATG TTGCGAGAGTGTACGAAAACTGACGACGATGAACTGTATCACGTAAAGTG TATGCAGTACACATCGTTGGCAGACGATGAATCCGCCGACGTATCCGCTC AACCACAGCTGGAAGTCGAAACGTTGAAGCCTGAGAAAGAGATATCGAAA CCTGCACTTACGAACACGAGCAGCAACCCACAGGATCCCCAACCTAACAC TAACTCTGACGACCTGCGAGAGCCATCAGCAACAACATTCGAGACTGCAG CGATTTCTCCAACTGCTAAAGAAGAACCGCGAGAAGTCCCTCAAACTCCC TTGGTTTCTCAGGTAAACGTTGCGAAACCCGAACCGAATATTATTGCGAG GGACAATCAAGGGATCAGCCACGCACTTGCGACGCCATATGTTAATCCAC GGAAACACGAACCCTTACTAGTGGGGCATGCTGACCCAAGCGATACCCGC GGTATACCCATGATGGCGATGAATGGTATTCCCGCAGGAACGATGACAAG TTCTGTGCCAGGCCAAGATTCTACGGGAAAAGTCATTATCTCGAAAGTAC CGAAGTGGCTTGCTGCTACAACGGGGATACAGGTTATGCACTTAGAACCG GCGAGAAAGGACGAACCCACTGTTGTTTCGACCTCACCACCTTCTGGTCA AAAAAGAAAGAGAGGTGATTCGGAAAGCGGAATGTATGAAATGGGGAGTT TGAATATGAATATACCTATTGTTTCAGCCACATCTCAGATGTCTTATGTT GACATTGCTGAGCCTCAAGCGAAGCGTCAAAAAGAATGCGTTCCACAGTC AAATGCGTGA back to topprotein sequence of Gvermi12340.t1 >Gvermi12340.t1 ID=Gvermi12340.t1|Name=Gvermi12340.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=820bp
MFHQSNFVASAPPQPPAARPVPQAPPLDLSSVPPPLQAAAIEYDAFLNDL TWNSKQVINQLTTIAAENLPASDAISSVIEQRIFNAAPSMKLPFLYLMDS IVKNVGRRYLSRFAQNLFHTFTNAYAVAPPTTRISLRRMLGTWPSIYGFE LVNAMTARADQIDAAPYGQLHPHHAPAARLPAQQPPSFFGQQPRVPMPRR VAEPRPQPPIPGLRSQPTRPPVIPPPSQMPPGGGKNLPLRSALRPAPPAP AIIPQPPPEFVELERMMSQVIRNASMGTFPSNHQLFTLNRMISTQLKSPS THLQRNALIRFQQQLREISAAPRHRAAPVSKPPHVSAPPPAPLPPPQVPA PHVGAALSNLLRAMPQGLLHTVQSVAQPSRPLPSPVAVPRPSGAPRRAPD SVAPSYATAASAPLLTFSDLKGMSHHAGVRSLYTDLPHLSKSDGMRFATK EALREHLDWLFRQNRRKRGTKEQVVVGGQSRGWFETLDVFLGKVDPNAKP TNPSVNKKNVADENNDRTVSVVESKSENDICAACHEAFETFWDDDKHAWM LRECTKTDDDELYHVKCMQYTSLADDESADVSAQPQLEVETLKPEKEISK PALTNTSSNPQDPQPNTNSDDLREPSATTFETAAISPTAKEEPREVPQTP LVSQVNVAKPEPNIIARDNQGISHALATPYVNPRKHEPLLVGHADPSDTR GIPMMAMNGIPAGTMTSSVPGQDSTGKVIISKVPKWLAATTGIQVMHLEP ARKDEPTVVSTSPPSGQKRKRGDSESGMYEMGSLNMNIPIVSATSQMSYV DIAEPQAKRQKECVPQSNA* back to topmRNA from alignment at ScGOVlb_3404:4272766..4275225- Legend: polypeptideCDSexonstart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gvermi12340.t1 ID=Gvermi12340.t1|Name=Gvermi12340.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2460bp|location=Sequence derived from alignment at ScGOVlb_3404:4272766..4275225- (Gracilaria vermiculophylla HapMaleFtJ_2017 male) ATGTTCCACCAATCCAACTTCGTCGCTAGCGCACCCCCTCAGCCACCTGC
CGCCCGTCCCGTTCCTCAGGCACCCCCTCTTGATCTATCTTCCGTCCCTC
CCCCACTGCAGGCCGCTGCCATCGAGTATGACGCCTTTCTCAATGACCTT
ACCTGGAATTCCAAACAGGTCATCAACCAACTCACCACAATTGCCGCCGA
GAACCTCCCGGCTTCTGATGCCATCAGCTCCGTTATTGAGCAGCGCATTT
TCAACGCCGCTCCATCCATGAAGCTTCCATTCCTCTATCTCATGGACTCC
ATTGTGAAAAACGTCGGCAGAAGGTATCTCTCGCGTTTTGCGCAGAATCT
GTTTCACACCTTCACCAACGCTTACGCCGTCGCCCCGCCAACCACGCGCA
TTTCATTGCGCAGAATGCTAGGCACCTGGCCTAGCATCTACGGCTTTGAG
CTAGTCAACGCCATGACAGCTCGAGCCGATCAGATTGACGCTGCTCCGTA
CGGACAGCTTCATCCGCATCATGCGCCTGCTGCTCGCTTGCCGGCGCAGC
AACCCCCCTCATTCTTCGGTCAGCAACCGCGAGTGCCCATGCCGCGTCGC
GTCGCCGAACCGCGACCGCAGCCTCCAATACCGGGGCTGCGCTCTCAACC
GACTCGCCCGCCCGTCATACCTCCACCTTCTCAAATGCCTCCCGGTGGAG
GCAAAAACTTACCTTTACGCTCGGCTTTGCGTCCGGCTCCGCCCGCACCC
GCGATCATACCGCAGCCGCCGCCGGAATTTGTGGAGCTGGAACGGATGAT
GTCACAGGTAATTAGAAATGCTAGCATGGGAACTTTCCCATCAAACCATC
AGTTGTTTACTCTCAACAGGATGATTTCCACCCAGCTCAAGTCCCCTTCC
ACCCACCTTCAGCGAAACGCGTTAATACGCTTCCAGCAGCAGCTGCGCGA
GATCTCTGCTGCCCCTCGTCACCGCGCTGCGCCTGTTTCCAAGCCTCCTC
ATGTCAGCGCTCCCCCTCCCGCGCCCCTTCCGCCTCCCCAAGTCCCTGCC
CCCCACGTTGGCGCTGCCCTTTCCAACTTGCTTCGCGCCATGCCTCAAGG
GCTGCTCCACACAGTGCAGTCTGTAGCGCAACCTTCTCGCCCTCTCCCTT
CCCCAGTCGCCGTGCCCCGACCGTCAGGAGCTCCTCGGCGAGCACCTGAT
TCCGTCGCACCGTCTTACGCAACGGCGGCCTCTGCCCCTCTGCTAACATT
TTCCGATTTGAAAGGCATGTCTCATCACGCAGGCGTTCGATCCCTGTATA
CCGATTTGCCGCACCTTTCCAAGAGCGATGGCATGAGATTCGCCACAAAG
GAGGCCCTACGAGAGCATCTTGACTGGCTCTTCCGACAGAATCGTCGAAA
GCGGGGCACCAAAGAGCAGGTGGTTGTGGGAGGGCAATCTCGAGGTTGGT
TTGAAACGCTGGACGTGTTCTTGGGCAAAGTTGATCCCAATGCTAAACCA
ACGAACCCTTCTGTAAATAAGAAAAATGTAGCAGACGAAAACAACGATAG
AACCGTGTCTGTTGTTGAATCCAAGTCTGAAAATGACATCTGCGCCGCAT
GCCACGAGGCGTTCGAGACCTTTTGGGACGACGACAAACACGCTTGGATG
TTGCGAGAGTGTACGAAAACTGACGACGATGAACTGTATCACGTAAAGTG
TATGCAGTACACATCGTTGGCAGACGATGAATCCGCCGACGTATCCGCTC
AACCACAGCTGGAAGTCGAAACGTTGAAGCCTGAGAAAGAGATATCGAAA
CCTGCACTTACGAACACGAGCAGCAACCCACAGGATCCCCAACCTAACAC
TAACTCTGACGACCTGCGAGAGCCATCAGCAACAACATTCGAGACTGCAG
CGATTTCTCCAACTGCTAAAGAAGAACCGCGAGAAGTCCCTCAAACTCCC
TTGGTTTCTCAGGTAAACGTTGCGAAACCCGAACCGAATATTATTGCGAG
GGACAATCAAGGGATCAGCCACGCACTTGCGACGCCATATGTTAATCCAC
GGAAACACGAACCCTTACTAGTGGGGCATGCTGACCCAAGCGATACCCGC
GGTATACCCATGATGGCGATGAATGGTATTCCCGCAGGAACGATGACAAG
TTCTGTGCCAGGCCAAGATTCTACGGGAAAAGTCATTATCTCGAAAGTAC
CGAAGTGGCTTGCTGCTACAACGGGGATACAGGTTATGCACTTAGAACCG
GCGAGAAAGGACGAACCCACTGTTGTTTCGACCTCACCACCTTCTGGTCA
AAAAAGAAAGAGAGGTGATTCGGAAAGCGGAATGTATGAAATGGGGAGTT
TGAATATGAATATACCTATTGTTTCAGCCACATCTCAGATGTCTTATGTT
GACATTGCTGAGCCTCAAGCGAAGCGTCAAAAAGAATGCGTTCCACAGTC
AAATGCGTGA back to topCoding sequence (CDS) from alignment at ScGOVlb_3404:4272766..4275225- >Gvermi12340.t1 ID=Gvermi12340.t1|Name=Gvermi12340.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2460bp|location=Sequence derived from alignment at ScGOVlb_3404:4272766..4275225- (Gracilaria vermiculophylla HapMaleFtJ_2017 male) ATGTTCCACCAATCCAACTTCGTCGCTAGCGCACCCCCTCAGCCACCTGC CGCCCGTCCCGTTCCTCAGGCACCCCCTCTTGATCTATCTTCCGTCCCTC CCCCACTGCAGGCCGCTGCCATCGAGTATGACGCCTTTCTCAATGACCTT ACCTGGAATTCCAAACAGGTCATCAACCAACTCACCACAATTGCCGCCGA GAACCTCCCGGCTTCTGATGCCATCAGCTCCGTTATTGAGCAGCGCATTT TCAACGCCGCTCCATCCATGAAGCTTCCATTCCTCTATCTCATGGACTCC ATTGTGAAAAACGTCGGCAGAAGGTATCTCTCGCGTTTTGCGCAGAATCT GTTTCACACCTTCACCAACGCTTACGCCGTCGCCCCGCCAACCACGCGCA TTTCATTGCGCAGAATGCTAGGCACCTGGCCTAGCATCTACGGCTTTGAG CTAGTCAACGCCATGACAGCTCGAGCCGATCAGATTGACGCTGCTCCGTA CGGACAGCTTCATCCGCATCATGCGCCTGCTGCTCGCTTGCCGGCGCAGC AACCCCCCTCATTCTTCGGTCAGCAACCGCGAGTGCCCATGCCGCGTCGC GTCGCCGAACCGCGACCGCAGCCTCCAATACCGGGGCTGCGCTCTCAACC GACTCGCCCGCCCGTCATACCTCCACCTTCTCAAATGCCTCCCGGTGGAG GCAAAAACTTACCTTTACGCTCGGCTTTGCGTCCGGCTCCGCCCGCACCC GCGATCATACCGCAGCCGCCGCCGGAATTTGTGGAGCTGGAACGGATGAT GTCACAGGTAATTAGAAATGCTAGCATGGGAACTTTCCCATCAAACCATC AGTTGTTTACTCTCAACAGGATGATTTCCACCCAGCTCAAGTCCCCTTCC ACCCACCTTCAGCGAAACGCGTTAATACGCTTCCAGCAGCAGCTGCGCGA GATCTCTGCTGCCCCTCGTCACCGCGCTGCGCCTGTTTCCAAGCCTCCTC ATGTCAGCGCTCCCCCTCCCGCGCCCCTTCCGCCTCCCCAAGTCCCTGCC CCCCACGTTGGCGCTGCCCTTTCCAACTTGCTTCGCGCCATGCCTCAAGG GCTGCTCCACACAGTGCAGTCTGTAGCGCAACCTTCTCGCCCTCTCCCTT CCCCAGTCGCCGTGCCCCGACCGTCAGGAGCTCCTCGGCGAGCACCTGAT TCCGTCGCACCGTCTTACGCAACGGCGGCCTCTGCCCCTCTGCTAACATT TTCCGATTTGAAAGGCATGTCTCATCACGCAGGCGTTCGATCCCTGTATA CCGATTTGCCGCACCTTTCCAAGAGCGATGGCATGAGATTCGCCACAAAG GAGGCCCTACGAGAGCATCTTGACTGGCTCTTCCGACAGAATCGTCGAAA GCGGGGCACCAAAGAGCAGGTGGTTGTGGGAGGGCAATCTCGAGGTTGGT TTGAAACGCTGGACGTGTTCTTGGGCAAAGTTGATCCCAATGCTAAACCA ACGAACCCTTCTGTAAATAAGAAAAATGTAGCAGACGAAAACAACGATAG AACCGTGTCTGTTGTTGAATCCAAGTCTGAAAATGACATCTGCGCCGCAT GCCACGAGGCGTTCGAGACCTTTTGGGACGACGACAAACACGCTTGGATG TTGCGAGAGTGTACGAAAACTGACGACGATGAACTGTATCACGTAAAGTG TATGCAGTACACATCGTTGGCAGACGATGAATCCGCCGACGTATCCGCTC AACCACAGCTGGAAGTCGAAACGTTGAAGCCTGAGAAAGAGATATCGAAA CCTGCACTTACGAACACGAGCAGCAACCCACAGGATCCCCAACCTAACAC TAACTCTGACGACCTGCGAGAGCCATCAGCAACAACATTCGAGACTGCAG CGATTTCTCCAACTGCTAAAGAAGAACCGCGAGAAGTCCCTCAAACTCCC TTGGTTTCTCAGGTAAACGTTGCGAAACCCGAACCGAATATTATTGCGAG GGACAATCAAGGGATCAGCCACGCACTTGCGACGCCATATGTTAATCCAC GGAAACACGAACCCTTACTAGTGGGGCATGCTGACCCAAGCGATACCCGC GGTATACCCATGATGGCGATGAATGGTATTCCCGCAGGAACGATGACAAG TTCTGTGCCAGGCCAAGATTCTACGGGAAAAGTCATTATCTCGAAAGTAC CGAAGTGGCTTGCTGCTACAACGGGGATACAGGTTATGCACTTAGAACCG GCGAGAAAGGACGAACCCACTGTTGTTTCGACCTCACCACCTTCTGGTCA AAAAAGAAAGAGAGGTGATTCGGAAAGCGGAATGTATGAAATGGGGAGTT TGAATATGAATATACCTATTGTTTCAGCCACATCTCAGATGTCTTATGTT GACATTGCTGAGCCTCAAGCGAAGCGTCAAAAAGAATGCGTTCCACAGTC AAATGCGTGA back to top
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