Gvermi12338.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12338.t1
Unique NameGvermi12338.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length204
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4270335..4270946 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog10228.TriadP60361
Preferred nameTMEM199
PFAMsVma12
Max annot lvl33208|Metazoa
KEGG koko:K20187
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005783,GO:0005793,GO:0005798,GO:0006807,GO:0006873,GO:0006875,GO:0006879,GO:0006885,GO:0006996,GO:0007033,GO:0007035,GO:0007039,GO:0007040,GO:0007042,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009628,GO:0009987,GO:0012505,GO:0012506,GO:0016020,GO:0016043,GO:0016469,GO:0016471,GO:0019538,GO:0019725,GO:0030003,GO:0030004,GO:0030135,GO:0030137,GO:0030163,GO:0030641,GO:0030659,GO:0030660,GO:0030662,GO:0030663,GO:0031090,GO:0031410,GO:0031982,GO:0032991,GO:0033116,GO:0033176,GO:0035751,GO:0036295,GO:0036296,GO:0042221,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045851,GO:0046916,GO:0048878,GO:0050801,GO:0050896,GO:0051452,GO:0051453,GO:0051716,GO:0055065,GO:0055067,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0065007,GO:0065008,GO:0070482,GO:0070887,GO:0071453,GO:0071704,GO:0071840,GO:0080171,GO:0097708,GO:0098588,GO:0098771,GO:0098796,GO:0098805,GO:1901564,GO:1901565,GO:1901575,GO:1905146
Evalue2.25e-08
EggNOG OGs29V96@1|root,2RXKD@2759|Eukaryota,3A164@33154|Opisthokonta,3BPB5@33208|Metazoa
Descriptiontransmembrane protein 199
COG categoryS
BRITEko00000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12338Gvermi12338Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4270335..4270946 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12338.t1.stop1Gvermi12338.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4270335..4270337 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12338.t1.CDS1Gvermi12338.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4270335..4270946 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12338.t1.exon1Gvermi12338.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4270335..4270946 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12338.t1.start1Gvermi12338.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4270944..4270946 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12338.t1Gvermi12338.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4270335..4270946 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12338.t1 ID=Gvermi12338.t1|Name=Gvermi12338.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=204bp
MVVVLANERVRVVLREAQAEGSVRRTENVETVSHKCLANAIRKCANGPSL
TSLLAASQVYLTHEHACEVHIPRVRNPELQARIERLEALQKDREYARMVR
DVSRADATNVEIESARMGKFAPQMSIGVNVVVTMATCFTAGFFVFKHSTG
SQTGGLIGGVAAMIIAMGVEVVLVLTRIYTIDKEVDRHVKRRQKKADPAR
TLS*
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spliced messenger RNA

>Gvermi12338.t1 ID=Gvermi12338.t1|Name=Gvermi12338.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=612bp|location=Sequence derived from alignment at ScGOVlb_3404:4270335..4270946- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCGTCGTTCTCGCAAATGAAAGAGTGCGCGTCGTGCTCCGAGAAGC
TCAAGCCGAGGGTTCAGTGCGAAGAACCGAAAATGTGGAAACCGTGTCTC
ACAAGTGTTTGGCAAATGCGATCCGAAAGTGCGCAAACGGGCCGTCTCTG
ACCTCGCTTCTTGCCGCATCGCAAGTATATCTTACGCACGAACACGCGTG
CGAGGTGCATATTCCCCGTGTCAGGAATCCCGAGTTGCAGGCTCGCATTG
AGCGACTTGAAGCGCTCCAAAAGGACCGAGAGTACGCAAGGATGGTTCGA
GACGTGTCGCGAGCGGATGCGACCAATGTAGAAATTGAGTCTGCGCGGAT
GGGCAAGTTTGCCCCTCAAATGTCCATTGGTGTCAACGTGGTCGTCACCA
TGGCCACGTGCTTCACAGCTGGGTTTTTTGTGTTTAAACATAGCACTGGA
TCGCAGACTGGTGGGCTCATAGGCGGAGTGGCCGCGATGATTATTGCTAT
GGGCGTCGAAGTGGTTCTGGTTCTTACAAGAATTTACACAATTGACAAAG
AAGTAGACAGGCACGTCAAGCGACGTCAAAAAAAAGCTGACCCCGCTCGC
ACGTTGTCATGA
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protein sequence of Gvermi12338.t1

>Gvermi12338.t1 ID=Gvermi12338.t1|Name=Gvermi12338.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=204bp
MVVVLANERVRVVLREAQAEGSVRRTENVETVSHKCLANAIRKCANGPSL
TSLLAASQVYLTHEHACEVHIPRVRNPELQARIERLEALQKDREYARMVR
DVSRADATNVEIESARMGKFAPQMSIGVNVVVTMATCFTAGFFVFKHSTG
SQTGGLIGGVAAMIIAMGVEVVLVLTRIYTIDKEVDRHVKRRQKKADPAR
TLS*
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mRNA from alignment at ScGOVlb_3404:4270335..4270946-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12338.t1 ID=Gvermi12338.t1|Name=Gvermi12338.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=612bp|location=Sequence derived from alignment at ScGOVlb_3404:4270335..4270946- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTCGTCGTTCTCGCAAATGAAAGAGTGCGCGTCGTGCTCCGAGAAGC
TCAAGCCGAGGGTTCAGTGCGAAGAACCGAAAATGTGGAAACCGTGTCTC
ACAAGTGTTTGGCAAATGCGATCCGAAAGTGCGCAAACGGGCCGTCTCTG
ACCTCGCTTCTTGCCGCATCGCAAGTATATCTTACGCACGAACACGCGTG
CGAGGTGCATATTCCCCGTGTCAGGAATCCCGAGTTGCAGGCTCGCATTG
AGCGACTTGAAGCGCTCCAAAAGGACCGAGAGTACGCAAGGATGGTTCGA
GACGTGTCGCGAGCGGATGCGACCAATGTAGAAATTGAGTCTGCGCGGAT
GGGCAAGTTTGCCCCTCAAATGTCCATTGGTGTCAACGTGGTCGTCACCA
TGGCCACGTGCTTCACAGCTGGGTTTTTTGTGTTTAAACATAGCACTGGA
TCGCAGACTGGTGGGCTCATAGGCGGAGTGGCCGCGATGATTATTGCTAT
GGGCGTCGAAGTGGTTCTGGTTCTTACAAGAATTTACACAATTGACAAAG
AAGTAGACAGGCACGTCAAGCGACGTCAAAAAAAAGCTGACCCCGCTCGC
ACGTTGTCATGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4270335..4270946-

>Gvermi12338.t1 ID=Gvermi12338.t1|Name=Gvermi12338.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=612bp|location=Sequence derived from alignment at ScGOVlb_3404:4270335..4270946- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTCGTCGTTCTCGCAAATGAAAGAGTGCGCGTCGTGCTCCGAGAAGC
TCAAGCCGAGGGTTCAGTGCGAAGAACCGAAAATGTGGAAACCGTGTCTC
ACAAGTGTTTGGCAAATGCGATCCGAAAGTGCGCAAACGGGCCGTCTCTG
ACCTCGCTTCTTGCCGCATCGCAAGTATATCTTACGCACGAACACGCGTG
CGAGGTGCATATTCCCCGTGTCAGGAATCCCGAGTTGCAGGCTCGCATTG
AGCGACTTGAAGCGCTCCAAAAGGACCGAGAGTACGCAAGGATGGTTCGA
GACGTGTCGCGAGCGGATGCGACCAATGTAGAAATTGAGTCTGCGCGGAT
GGGCAAGTTTGCCCCTCAAATGTCCATTGGTGTCAACGTGGTCGTCACCA
TGGCCACGTGCTTCACAGCTGGGTTTTTTGTGTTTAAACATAGCACTGGA
TCGCAGACTGGTGGGCTCATAGGCGGAGTGGCCGCGATGATTATTGCTAT
GGGCGTCGAAGTGGTTCTGGTTCTTACAAGAATTTACACAATTGACAAAG
AAGTAGACAGGCACGTCAAGCGACGTCAAAAAAAAGCTGACCCCGCTCGC
ACGTTGTCATGA
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