Gvermi12337.t2 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12337.t2
Unique NameGvermi12337.t2
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length209
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4268989..4269615 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5888.CAK78360
PFAMsEF-hand_5,EF-hand_7,Pkinase
Max annot lvl2759|Eukaryota
KEGG koko:K13412
KEGG Pathwayko04626,ko05145,map04626,map05145
Evalue1.41e-09
EggNOG OGsKOG0032@1|root,KOG0032@2759|Eukaryota
EC2.7.11.1
Descriptionprotein serine/threonine kinase activity
COG categoryT
BRITEko00000,ko00001,ko01000,ko01001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12337Gvermi12337Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4268845..4269615 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12337.t2.start1Gvermi12337.t2.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4268989..4268991 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12337.t2.CDS1Gvermi12337.t2.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4268989..4269615 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12337.t2.exon1Gvermi12337.t2.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4268989..4269615 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12337.t2.stop1Gvermi12337.t2.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4269613..4269615 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12337.t2Gvermi12337.t2Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4268989..4269615 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12337.t2 ID=Gvermi12337.t2|Name=Gvermi12337.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=209bp
MENILVTNSKSTVVTKLCDFGLAVRHAPSRPVPHSTSVGTRYAQAPEMVL
AAEKGHSRAHYDSAVDVWACGIVLFALLYNRIPWIGHPSEQATALSAMHQ
LATHSKPSIQLMQTVEERLATPPLLQSLLCGLLQPLPAKRLTARAALEHK
LFSDVHQTLNVTRHIQQDLMTSPVSARCAFRRVVSLVRAVECFRLSTLST
VSRPMVVL*
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spliced messenger RNA

>Gvermi12337.t2 ID=Gvermi12337.t2|Name=Gvermi12337.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=627bp|location=Sequence derived from alignment at ScGOVlb_3404:4268989..4269615+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGAACATCCTCGTCACCAACTCTAAATCCACCGTCGTCACAAAGTT
GTGCGATTTTGGCCTTGCTGTGCGACACGCCCCCTCGCGCCCAGTCCCCC
ACAGCACTTCCGTGGGAACCAGATATGCCCAAGCCCCGGAAATGGTGCTC
GCCGCTGAAAAGGGGCACTCGCGTGCCCATTACGACAGCGCCGTTGACGT
TTGGGCCTGCGGCATTGTCCTTTTCGCCCTTTTGTACAATCGCATCCCGT
GGATCGGCCACCCGTCCGAGCAAGCGACGGCACTCAGCGCCATGCACCAA
CTCGCTACACACTCAAAACCGTCCATCCAACTTATGCAAACCGTGGAAGA
GAGACTTGCTACCCCACCTCTGCTGCAGAGTCTCCTGTGTGGCTTGCTGC
AACCCCTTCCCGCAAAACGCCTAACCGCCCGAGCAGCGCTGGAGCACAAG
CTGTTCTCCGATGTTCACCAAACTCTCAACGTCACTCGCCACATTCAGCA
GGATTTGATGACGTCACCGGTATCTGCGCGCTGCGCCTTTCGCAGAGTCG
TATCTCTTGTCCGCGCTGTCGAGTGCTTTCGCCTCTCTACCCTATCAACC
GTTTCACGCCCAATGGTCGTTTTGTAA
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protein sequence of Gvermi12337.t2

>Gvermi12337.t2 ID=Gvermi12337.t2|Name=Gvermi12337.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=209bp
MENILVTNSKSTVVTKLCDFGLAVRHAPSRPVPHSTSVGTRYAQAPEMVL
AAEKGHSRAHYDSAVDVWACGIVLFALLYNRIPWIGHPSEQATALSAMHQ
LATHSKPSIQLMQTVEERLATPPLLQSLLCGLLQPLPAKRLTARAALEHK
LFSDVHQTLNVTRHIQQDLMTSPVSARCAFRRVVSLVRAVECFRLSTLST
VSRPMVVL*
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mRNA from alignment at ScGOVlb_3404:4268989..4269615+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12337.t2 ID=Gvermi12337.t2|Name=Gvermi12337.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=627bp|location=Sequence derived from alignment at ScGOVlb_3404:4268989..4269615+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAGAACATCCTCGTCACCAACTCTAAATCCACCGTCGTCACAAAGTT
GTGCGATTTTGGCCTTGCTGTGCGACACGCCCCCTCGCGCCCAGTCCCCC
ACAGCACTTCCGTGGGAACCAGATATGCCCAAGCCCCGGAAATGGTGCTC
GCCGCTGAAAAGGGGCACTCGCGTGCCCATTACGACAGCGCCGTTGACGT
TTGGGCCTGCGGCATTGTCCTTTTCGCCCTTTTGTACAATCGCATCCCGT
GGATCGGCCACCCGTCCGAGCAAGCGACGGCACTCAGCGCCATGCACCAA
CTCGCTACACACTCAAAACCGTCCATCCAACTTATGCAAACCGTGGAAGA
GAGACTTGCTACCCCACCTCTGCTGCAGAGTCTCCTGTGTGGCTTGCTGC
AACCCCTTCCCGCAAAACGCCTAACCGCCCGAGCAGCGCTGGAGCACAAG
CTGTTCTCCGATGTTCACCAAACTCTCAACGTCACTCGCCACATTCAGCA
GGATTTGATGACGTCACCGGTATCTGCGCGCTGCGCCTTTCGCAGAGTCG
TATCTCTTGTCCGCGCTGTCGAGTGCTTTCGCCTCTCTACCCTATCAACC
GTTTCACGCCCAATGGTCGTTTTGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4268989..4269615+

>Gvermi12337.t2 ID=Gvermi12337.t2|Name=Gvermi12337.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=627bp|location=Sequence derived from alignment at ScGOVlb_3404:4268989..4269615+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAGAACATCCTCGTCACCAACTCTAAATCCACCGTCGTCACAAAGTT
GTGCGATTTTGGCCTTGCTGTGCGACACGCCCCCTCGCGCCCAGTCCCCC
ACAGCACTTCCGTGGGAACCAGATATGCCCAAGCCCCGGAAATGGTGCTC
GCCGCTGAAAAGGGGCACTCGCGTGCCCATTACGACAGCGCCGTTGACGT
TTGGGCCTGCGGCATTGTCCTTTTCGCCCTTTTGTACAATCGCATCCCGT
GGATCGGCCACCCGTCCGAGCAAGCGACGGCACTCAGCGCCATGCACCAA
CTCGCTACACACTCAAAACCGTCCATCCAACTTATGCAAACCGTGGAAGA
GAGACTTGCTACCCCACCTCTGCTGCAGAGTCTCCTGTGTGGCTTGCTGC
AACCCCTTCCCGCAAAACGCCTAACCGCCCGAGCAGCGCTGGAGCACAAG
CTGTTCTCCGATGTTCACCAAACTCTCAACGTCACTCGCCACATTCAGCA
GGATTTGATGACGTCACCGGTATCTGCGCGCTGCGCCTTTCGCAGAGTCG
TATCTCTTGTCCGCGCTGTCGAGTGCTTTCGCCTCTCTACCCTATCAACC
GTTTCACGCCCAATGGTCGTTTTGTAA
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