Gvermi12337.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12337.t1
Unique NameGvermi12337.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length257
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4268845..4269615 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4565.Traes_5DS_947703B41.1
PFAMsPkinase
Max annot lvl35493|Streptophyta
KEGG koko:K08818
Evalue5.01e-18
EggNOG OGsKOG0663@1|root,KOG0663@2759|Eukaryota,37K03@33090|Viridiplantae,3GBHU@35493|Streptophyta,3M3RD@4447|Liliopsida,3IB6V@38820|Poales
EC2.7.11.22
DescriptionBelongs to the protein kinase superfamily
COG categoryT
BRITEko00000,ko01000,ko01001,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12337Gvermi12337Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4268845..4269615 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12337.t1.start1Gvermi12337.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4268845..4268847 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12337.t1.CDS1Gvermi12337.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4268845..4269615 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12337.t1.exon1Gvermi12337.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4268845..4269615 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12337.t1.stop1Gvermi12337.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4269613..4269615 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12337.t1Gvermi12337.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4268845..4269615 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12337.t1 ID=Gvermi12337.t1|Name=Gvermi12337.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=257bp
MELVSAGTLLNHALRTPLSFHNVRLVICQLLNALAHIHSHAIIHRDVKME
NILVTNSKSTVVTKLCDFGLAVRHAPSRPVPHSTSVGTRYAQAPEMVLAA
EKGHSRAHYDSAVDVWACGIVLFALLYNRIPWIGHPSEQATALSAMHQLA
THSKPSIQLMQTVEERLATPPLLQSLLCGLLQPLPAKRLTARAALEHKLF
SDVHQTLNVTRHIQQDLMTSPVSARCAFRRVVSLVRAVECFRLSTLSTVS
RPMVVL*
back to top

spliced messenger RNA

>Gvermi12337.t1 ID=Gvermi12337.t1|Name=Gvermi12337.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=771bp|location=Sequence derived from alignment at ScGOVlb_3404:4268845..4269615+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAACTTGTCTCAGCAGGCACGCTTCTCAATCATGCGCTGCGCACCCC
GCTTTCGTTTCACAACGTGCGCCTCGTCATCTGCCAACTTTTGAACGCCC
TGGCCCATATTCACTCGCATGCCATCATTCACAGGGACGTCAAGATGGAG
AACATCCTCGTCACCAACTCTAAATCCACCGTCGTCACAAAGTTGTGCGA
TTTTGGCCTTGCTGTGCGACACGCCCCCTCGCGCCCAGTCCCCCACAGCA
CTTCCGTGGGAACCAGATATGCCCAAGCCCCGGAAATGGTGCTCGCCGCT
GAAAAGGGGCACTCGCGTGCCCATTACGACAGCGCCGTTGACGTTTGGGC
CTGCGGCATTGTCCTTTTCGCCCTTTTGTACAATCGCATCCCGTGGATCG
GCCACCCGTCCGAGCAAGCGACGGCACTCAGCGCCATGCACCAACTCGCT
ACACACTCAAAACCGTCCATCCAACTTATGCAAACCGTGGAAGAGAGACT
TGCTACCCCACCTCTGCTGCAGAGTCTCCTGTGTGGCTTGCTGCAACCCC
TTCCCGCAAAACGCCTAACCGCCCGAGCAGCGCTGGAGCACAAGCTGTTC
TCCGATGTTCACCAAACTCTCAACGTCACTCGCCACATTCAGCAGGATTT
GATGACGTCACCGGTATCTGCGCGCTGCGCCTTTCGCAGAGTCGTATCTC
TTGTCCGCGCTGTCGAGTGCTTTCGCCTCTCTACCCTATCAACCGTTTCA
CGCCCAATGGTCGTTTTGTAA
back to top

protein sequence of Gvermi12337.t1

>Gvermi12337.t1 ID=Gvermi12337.t1|Name=Gvermi12337.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=257bp
MELVSAGTLLNHALRTPLSFHNVRLVICQLLNALAHIHSHAIIHRDVKME
NILVTNSKSTVVTKLCDFGLAVRHAPSRPVPHSTSVGTRYAQAPEMVLAA
EKGHSRAHYDSAVDVWACGIVLFALLYNRIPWIGHPSEQATALSAMHQLA
THSKPSIQLMQTVEERLATPPLLQSLLCGLLQPLPAKRLTARAALEHKLF
SDVHQTLNVTRHIQQDLMTSPVSARCAFRRVVSLVRAVECFRLSTLSTVS
RPMVVL*
back to top

mRNA from alignment at ScGOVlb_3404:4268845..4269615+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12337.t1 ID=Gvermi12337.t1|Name=Gvermi12337.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=771bp|location=Sequence derived from alignment at ScGOVlb_3404:4268845..4269615+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAACTTGTCTCAGCAGGCACGCTTCTCAATCATGCGCTGCGCACCCC
GCTTTCGTTTCACAACGTGCGCCTCGTCATCTGCCAACTTTTGAACGCCC
TGGCCCATATTCACTCGCATGCCATCATTCACAGGGACGTCAAGATGGAG
AACATCCTCGTCACCAACTCTAAATCCACCGTCGTCACAAAGTTGTGCGA
TTTTGGCCTTGCTGTGCGACACGCCCCCTCGCGCCCAGTCCCCCACAGCA
CTTCCGTGGGAACCAGATATGCCCAAGCCCCGGAAATGGTGCTCGCCGCT
GAAAAGGGGCACTCGCGTGCCCATTACGACAGCGCCGTTGACGTTTGGGC
CTGCGGCATTGTCCTTTTCGCCCTTTTGTACAATCGCATCCCGTGGATCG
GCCACCCGTCCGAGCAAGCGACGGCACTCAGCGCCATGCACCAACTCGCT
ACACACTCAAAACCGTCCATCCAACTTATGCAAACCGTGGAAGAGAGACT
TGCTACCCCACCTCTGCTGCAGAGTCTCCTGTGTGGCTTGCTGCAACCCC
TTCCCGCAAAACGCCTAACCGCCCGAGCAGCGCTGGAGCACAAGCTGTTC
TCCGATGTTCACCAAACTCTCAACGTCACTCGCCACATTCAGCAGGATTT
GATGACGTCACCGGTATCTGCGCGCTGCGCCTTTCGCAGAGTCGTATCTC
TTGTCCGCGCTGTCGAGTGCTTTCGCCTCTCTACCCTATCAACCGTTTCA
CGCCCAATGGTCGTTTTGTAA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_3404:4268845..4269615+

>Gvermi12337.t1 ID=Gvermi12337.t1|Name=Gvermi12337.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=771bp|location=Sequence derived from alignment at ScGOVlb_3404:4268845..4269615+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAACTTGTCTCAGCAGGCACGCTTCTCAATCATGCGCTGCGCACCCC
GCTTTCGTTTCACAACGTGCGCCTCGTCATCTGCCAACTTTTGAACGCCC
TGGCCCATATTCACTCGCATGCCATCATTCACAGGGACGTCAAGATGGAG
AACATCCTCGTCACCAACTCTAAATCCACCGTCGTCACAAAGTTGTGCGA
TTTTGGCCTTGCTGTGCGACACGCCCCCTCGCGCCCAGTCCCCCACAGCA
CTTCCGTGGGAACCAGATATGCCCAAGCCCCGGAAATGGTGCTCGCCGCT
GAAAAGGGGCACTCGCGTGCCCATTACGACAGCGCCGTTGACGTTTGGGC
CTGCGGCATTGTCCTTTTCGCCCTTTTGTACAATCGCATCCCGTGGATCG
GCCACCCGTCCGAGCAAGCGACGGCACTCAGCGCCATGCACCAACTCGCT
ACACACTCAAAACCGTCCATCCAACTTATGCAAACCGTGGAAGAGAGACT
TGCTACCCCACCTCTGCTGCAGAGTCTCCTGTGTGGCTTGCTGCAACCCC
TTCCCGCAAAACGCCTAACCGCCCGAGCAGCGCTGGAGCACAAGCTGTTC
TCCGATGTTCACCAAACTCTCAACGTCACTCGCCACATTCAGCAGGATTT
GATGACGTCACCGGTATCTGCGCGCTGCGCCTTTCGCAGAGTCGTATCTC
TTGTCCGCGCTGTCGAGTGCTTTCGCCTCTCTACCCTATCAACCGTTTCA
CGCCCAATGGTCGTTTTGTAA
back to top