Gvermi12325.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12325.t1
Unique Name	Gvermi12325.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	679

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:4225091..4227127 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	113355.CM001775_gene2864
PFAMs	ABC1
Max annot lvl	1117\|Cyanobacteria
Evalue	1.58e-151
EggNOG OGs	COG0661@1\|root,COG0661@2\|Bacteria,1G0X9@1117\|Cyanobacteria
Description	Unusual protein kinase
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12325	Gvermi12325	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3404 4225091..4227127 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12325.t1.start1	Gvermi12325.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_3404 4225091..4225093 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12325.t1.CDS1	Gvermi12325.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3404 4225091..4227127 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12325.t1.exon1	Gvermi12325.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3404 4225091..4227127 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12325.t1.stop1	Gvermi12325.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_3404 4227125..4227127 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12325.t1	Gvermi12325.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3404 4225091..4227127 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3404:4225091..4227127+
coding sequence from alignment at ScGOVlb_3404:4225091..4227127+

mRNA sequence

>Gvermi12325.t1 ID=Gvermi12325.t1|Name=Gvermi12325.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=679bp
LAMPSALFSAAFLPAAPLTPQSSVLKPPSQCPRMVLADRNRAATSTATTR
LAKRVRGEQYMPSDSYIGTPAPVRYGTLRLDYAQRFLDETQLRSPPPLET
RRSTGWQRGNTVSRSLSIWSFIGRILLQNWLDSKPSTYWMFNRTEAAVKD
RRRRLAAYSREQILRLGPTMIKVGQLASTRADLLPPEVIEELSSLQDRVP
AFSWQTAERLLKEQYGREVAEVFAFFDKTPIAAASLGQVYRARLFSGEEV
VVKVQRPKLERLFDLDLNALKVVARYLQKSKKYGGNGRDWVAIYEEVAKV
LYQEIDYVREANSCQRFGDNFRNAGITYVKVPKVYMQYTTKTVLCLQYLP
GIKVTDKKTLERAGLDLSLVANRLGNAFIRQVLDFAFFSSDPHPGNCAIG
ANESIIFYDFGMMGELNPRIKERLIDILRGVIDKDAQVVMEALVDLDALV
LPPDPTPVRRAIQYFLDSVGSRPNRDQTVAAIGDDLYATAYDRPFRLPAA
SIFLLRALSTLEGLAKTLDNDFKFSEVALPYADEILRERTSLMNSPQQLF
RSLVASLITGRQDPVSQELTKRVVGAGTDAVRAAGRIEKIEKTLSQLERG
DIKLRSRSTETEKLLRKQYSLTESTNYLLSTGTTALAATQLYAAGSLEPA
AAMAVFSAVLGMTYLRKLAKINKPDRYS*

spliced messenger RNA

>Gvermi12325.t1 ID=Gvermi12325.t1|Name=Gvermi12325.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2037bp|location=Sequence derived from alignment at ScGOVlb_3404:4225091..4227127+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
TTGGCCATGCCTTCCGCGCTTTTCTCGGCGGCGTTCCTGCCCGCGGCACC
ACTGACTCCGCAGTCTTCCGTTCTTAAACCGCCGTCGCAATGCCCTCGCA
TGGTTCTTGCGGACCGAAACCGTGCCGCCACGTCCACCGCGACCACCAGG
CTCGCGAAGCGAGTCAGGGGCGAGCAGTACATGCCATCGGACTCGTACAT
CGGCACCCCAGCTCCGGTGCGCTACGGCACTCTTCGACTGGACTATGCAC
AGCGTTTTCTCGACGAGACCCAGCTGCGAAGCCCGCCGCCGCTTGAGACT
CGCCGTTCCACGGGGTGGCAGCGGGGCAACACCGTGTCACGTTCCCTCTC
CATTTGGAGCTTTATCGGACGAATACTGCTTCAAAATTGGCTCGATTCCA
AGCCTTCTACTTACTGGATGTTTAACAGGACTGAAGCAGCCGTCAAGGAC
AGGCGCAGACGGCTCGCTGCCTATTCAAGGGAACAGATTTTGAGGCTGGG
GCCGACCATGATCAAAGTCGGTCAACTTGCCAGCACACGTGCAGATCTGT
TACCCCCGGAGGTTATTGAAGAGCTTTCTTCGTTGCAGGACCGTGTGCCT
GCGTTTTCGTGGCAGACAGCTGAGCGTTTGTTGAAGGAGCAGTACGGGCG
AGAGGTTGCCGAGGTGTTTGCGTTCTTTGACAAGACTCCCATTGCTGCTG
CTTCTTTGGGCCAAGTGTATCGCGCACGGCTTTTCAGCGGAGAGGAGGTT
GTTGTCAAGGTTCAGCGCCCGAAGCTCGAGCGCCTGTTTGACCTCGATCT
TAACGCGCTCAAGGTGGTTGCCCGCTACCTGCAAAAGTCGAAGAAGTATG
GTGGAAACGGGAGAGATTGGGTGGCGATTTACGAAGAAGTGGCCAAGGTT
TTATACCAAGAGATTGATTACGTGCGAGAAGCAAACAGCTGTCAGCGTTT
TGGAGACAACTTTAGAAATGCTGGTATCACCTATGTCAAGGTCCCCAAGG
TTTACATGCAGTACACGACCAAAACGGTGCTGTGTTTGCAATATTTGCCC
GGTATTAAAGTGACAGACAAAAAGACTTTGGAAAGGGCGGGACTCGACCT
ATCTCTCGTCGCCAATCGACTTGGCAATGCCTTCATTCGCCAGGTGCTGG
ATTTTGCTTTCTTCAGCTCTGACCCACATCCCGGAAACTGTGCAATTGGC
GCAAATGAATCGATTATCTTTTATGACTTTGGAATGATGGGAGAGCTGAA
TCCTCGCATCAAGGAGCGATTAATAGATATCTTGCGTGGTGTGATTGACA
AAGATGCGCAGGTGGTCATGGAAGCGCTTGTAGACCTTGACGCTTTGGTG
TTGCCGCCGGATCCAACTCCTGTCCGCCGGGCGATTCAATATTTTCTTGA
TTCTGTCGGTTCCCGTCCAAATCGAGATCAGACTGTTGCAGCTATCGGTG
ATGATCTATATGCAACCGCATATGACAGACCATTCCGTTTACCAGCCGCC
AGTATATTCTTATTGAGAGCATTGTCCACACTGGAGGGATTGGCGAAGAC
TCTTGACAATGACTTCAAGTTCTCTGAAGTTGCTCTACCGTACGCCGATG
AGATTCTTCGCGAAAGAACGAGCCTGATGAATTCACCACAACAGCTGTTC
CGCTCCCTTGTCGCCAGTCTGATTACTGGTCGCCAGGATCCCGTTTCCCA
GGAGTTGACGAAACGAGTTGTTGGTGCAGGGACCGATGCTGTGCGGGCCG
CTGGTAGAATTGAAAAGATTGAGAAAACACTGTCGCAGCTGGAACGCGGC
GATATCAAGCTACGGTCGCGATCAACGGAGACTGAGAAACTGCTCCGAAA
GCAGTACTCTTTGACGGAAAGCACCAATTATCTGTTGTCTACAGGCACTA
CTGCGCTAGCTGCCACGCAGTTATACGCTGCCGGAAGTTTGGAGCCGGCA
GCCGCTATGGCAGTGTTTTCGGCGGTGTTAGGTATGACGTACTTGAGAAA
GTTGGCAAAAATCAACAAGCCCGATCGGTACAGTTAA

protein sequence of Gvermi12325.t1

>Gvermi12325.t1 ID=Gvermi12325.t1|Name=Gvermi12325.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=679bp
LAMPSALFSAAFLPAAPLTPQSSVLKPPSQCPRMVLADRNRAATSTATTR
LAKRVRGEQYMPSDSYIGTPAPVRYGTLRLDYAQRFLDETQLRSPPPLET
RRSTGWQRGNTVSRSLSIWSFIGRILLQNWLDSKPSTYWMFNRTEAAVKD
RRRRLAAYSREQILRLGPTMIKVGQLASTRADLLPPEVIEELSSLQDRVP
AFSWQTAERLLKEQYGREVAEVFAFFDKTPIAAASLGQVYRARLFSGEEV
VVKVQRPKLERLFDLDLNALKVVARYLQKSKKYGGNGRDWVAIYEEVAKV
LYQEIDYVREANSCQRFGDNFRNAGITYVKVPKVYMQYTTKTVLCLQYLP
GIKVTDKKTLERAGLDLSLVANRLGNAFIRQVLDFAFFSSDPHPGNCAIG
ANESIIFYDFGMMGELNPRIKERLIDILRGVIDKDAQVVMEALVDLDALV
LPPDPTPVRRAIQYFLDSVGSRPNRDQTVAAIGDDLYATAYDRPFRLPAA
SIFLLRALSTLEGLAKTLDNDFKFSEVALPYADEILRERTSLMNSPQQLF
RSLVASLITGRQDPVSQELTKRVVGAGTDAVRAAGRIEKIEKTLSQLERG
DIKLRSRSTETEKLLRKQYSLTESTNYLLSTGTTALAATQLYAAGSLEPA
AAMAVFSAVLGMTYLRKLAKINKPDRYS*

mRNA from alignment at ScGOVlb_3404:4225091..4227127+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12325.t1 ID=Gvermi12325.t1|Name=Gvermi12325.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2037bp|location=Sequence derived from alignment at ScGOVlb_3404:4225091..4227127+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
TTGGCCATGCCTTCCGCGCTTTTCTCGGCGGCGTTCCTGCCCGCGGCACC
ACTGACTCCGCAGTCTTCCGTTCTTAAACCGCCGTCGCAATGCCCTCGCA
TGGTTCTTGCGGACCGAAACCGTGCCGCCACGTCCACCGCGACCACCAGG
CTCGCGAAGCGAGTCAGGGGCGAGCAGTACATGCCATCGGACTCGTACAT
CGGCACCCCAGCTCCGGTGCGCTACGGCACTCTTCGACTGGACTATGCAC
AGCGTTTTCTCGACGAGACCCAGCTGCGAAGCCCGCCGCCGCTTGAGACT
CGCCGTTCCACGGGGTGGCAGCGGGGCAACACCGTGTCACGTTCCCTCTC
CATTTGGAGCTTTATCGGACGAATACTGCTTCAAAATTGGCTCGATTCCA
AGCCTTCTACTTACTGGATGTTTAACAGGACTGAAGCAGCCGTCAAGGAC
AGGCGCAGACGGCTCGCTGCCTATTCAAGGGAACAGATTTTGAGGCTGGG
GCCGACCATGATCAAAGTCGGTCAACTTGCCAGCACACGTGCAGATCTGT
TACCCCCGGAGGTTATTGAAGAGCTTTCTTCGTTGCAGGACCGTGTGCCT
GCGTTTTCGTGGCAGACAGCTGAGCGTTTGTTGAAGGAGCAGTACGGGCG
AGAGGTTGCCGAGGTGTTTGCGTTCTTTGACAAGACTCCCATTGCTGCTG
CTTCTTTGGGCCAAGTGTATCGCGCACGGCTTTTCAGCGGAGAGGAGGTT
GTTGTCAAGGTTCAGCGCCCGAAGCTCGAGCGCCTGTTTGACCTCGATCT
TAACGCGCTCAAGGTGGTTGCCCGCTACCTGCAAAAGTCGAAGAAGTATG
GTGGAAACGGGAGAGATTGGGTGGCGATTTACGAAGAAGTGGCCAAGGTT
TTATACCAAGAGATTGATTACGTGCGAGAAGCAAACAGCTGTCAGCGTTT
TGGAGACAACTTTAGAAATGCTGGTATCACCTATGTCAAGGTCCCCAAGG
TTTACATGCAGTACACGACCAAAACGGTGCTGTGTTTGCAATATTTGCCC
GGTATTAAAGTGACAGACAAAAAGACTTTGGAAAGGGCGGGACTCGACCT
ATCTCTCGTCGCCAATCGACTTGGCAATGCCTTCATTCGCCAGGTGCTGG
ATTTTGCTTTCTTCAGCTCTGACCCACATCCCGGAAACTGTGCAATTGGC
GCAAATGAATCGATTATCTTTTATGACTTTGGAATGATGGGAGAGCTGAA
TCCTCGCATCAAGGAGCGATTAATAGATATCTTGCGTGGTGTGATTGACA
AAGATGCGCAGGTGGTCATGGAAGCGCTTGTAGACCTTGACGCTTTGGTG
TTGCCGCCGGATCCAACTCCTGTCCGCCGGGCGATTCAATATTTTCTTGA
TTCTGTCGGTTCCCGTCCAAATCGAGATCAGACTGTTGCAGCTATCGGTG
ATGATCTATATGCAACCGCATATGACAGACCATTCCGTTTACCAGCCGCC
AGTATATTCTTATTGAGAGCATTGTCCACACTGGAGGGATTGGCGAAGAC
TCTTGACAATGACTTCAAGTTCTCTGAAGTTGCTCTACCGTACGCCGATG
AGATTCTTCGCGAAAGAACGAGCCTGATGAATTCACCACAACAGCTGTTC
CGCTCCCTTGTCGCCAGTCTGATTACTGGTCGCCAGGATCCCGTTTCCCA
GGAGTTGACGAAACGAGTTGTTGGTGCAGGGACCGATGCTGTGCGGGCCG
CTGGTAGAATTGAAAAGATTGAGAAAACACTGTCGCAGCTGGAACGCGGC
GATATCAAGCTACGGTCGCGATCAACGGAGACTGAGAAACTGCTCCGAAA
GCAGTACTCTTTGACGGAAAGCACCAATTATCTGTTGTCTACAGGCACTA
CTGCGCTAGCTGCCACGCAGTTATACGCTGCCGGAAGTTTGGAGCCGGCA
GCCGCTATGGCAGTGTTTTCGGCGGTGTTAGGTATGACGTACTTGAGAAA
GTTGGCAAAAATCAACAAGCCCGATCGGTACAGTTAA

Coding sequence (CDS) from alignment at ScGOVlb_3404:4225091..4227127+

>Gvermi12325.t1 ID=Gvermi12325.t1|Name=Gvermi12325.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2037bp|location=Sequence derived from alignment at ScGOVlb_3404:4225091..4227127+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
TTGGCCATGCCTTCCGCGCTTTTCTCGGCGGCGTTCCTGCCCGCGGCACC
ACTGACTCCGCAGTCTTCCGTTCTTAAACCGCCGTCGCAATGCCCTCGCA
TGGTTCTTGCGGACCGAAACCGTGCCGCCACGTCCACCGCGACCACCAGG
CTCGCGAAGCGAGTCAGGGGCGAGCAGTACATGCCATCGGACTCGTACAT
CGGCACCCCAGCTCCGGTGCGCTACGGCACTCTTCGACTGGACTATGCAC
AGCGTTTTCTCGACGAGACCCAGCTGCGAAGCCCGCCGCCGCTTGAGACT
CGCCGTTCCACGGGGTGGCAGCGGGGCAACACCGTGTCACGTTCCCTCTC
CATTTGGAGCTTTATCGGACGAATACTGCTTCAAAATTGGCTCGATTCCA
AGCCTTCTACTTACTGGATGTTTAACAGGACTGAAGCAGCCGTCAAGGAC
AGGCGCAGACGGCTCGCTGCCTATTCAAGGGAACAGATTTTGAGGCTGGG
GCCGACCATGATCAAAGTCGGTCAACTTGCCAGCACACGTGCAGATCTGT
TACCCCCGGAGGTTATTGAAGAGCTTTCTTCGTTGCAGGACCGTGTGCCT
GCGTTTTCGTGGCAGACAGCTGAGCGTTTGTTGAAGGAGCAGTACGGGCG
AGAGGTTGCCGAGGTGTTTGCGTTCTTTGACAAGACTCCCATTGCTGCTG
CTTCTTTGGGCCAAGTGTATCGCGCACGGCTTTTCAGCGGAGAGGAGGTT
GTTGTCAAGGTTCAGCGCCCGAAGCTCGAGCGCCTGTTTGACCTCGATCT
TAACGCGCTCAAGGTGGTTGCCCGCTACCTGCAAAAGTCGAAGAAGTATG
GTGGAAACGGGAGAGATTGGGTGGCGATTTACGAAGAAGTGGCCAAGGTT
TTATACCAAGAGATTGATTACGTGCGAGAAGCAAACAGCTGTCAGCGTTT
TGGAGACAACTTTAGAAATGCTGGTATCACCTATGTCAAGGTCCCCAAGG
TTTACATGCAGTACACGACCAAAACGGTGCTGTGTTTGCAATATTTGCCC
GGTATTAAAGTGACAGACAAAAAGACTTTGGAAAGGGCGGGACTCGACCT
ATCTCTCGTCGCCAATCGACTTGGCAATGCCTTCATTCGCCAGGTGCTGG
ATTTTGCTTTCTTCAGCTCTGACCCACATCCCGGAAACTGTGCAATTGGC
GCAAATGAATCGATTATCTTTTATGACTTTGGAATGATGGGAGAGCTGAA
TCCTCGCATCAAGGAGCGATTAATAGATATCTTGCGTGGTGTGATTGACA
AAGATGCGCAGGTGGTCATGGAAGCGCTTGTAGACCTTGACGCTTTGGTG
TTGCCGCCGGATCCAACTCCTGTCCGCCGGGCGATTCAATATTTTCTTGA
TTCTGTCGGTTCCCGTCCAAATCGAGATCAGACTGTTGCAGCTATCGGTG
ATGATCTATATGCAACCGCATATGACAGACCATTCCGTTTACCAGCCGCC
AGTATATTCTTATTGAGAGCATTGTCCACACTGGAGGGATTGGCGAAGAC
TCTTGACAATGACTTCAAGTTCTCTGAAGTTGCTCTACCGTACGCCGATG
AGATTCTTCGCGAAAGAACGAGCCTGATGAATTCACCACAACAGCTGTTC
CGCTCCCTTGTCGCCAGTCTGATTACTGGTCGCCAGGATCCCGTTTCCCA
GGAGTTGACGAAACGAGTTGTTGGTGCAGGGACCGATGCTGTGCGGGCCG
CTGGTAGAATTGAAAAGATTGAGAAAACACTGTCGCAGCTGGAACGCGGC
GATATCAAGCTACGGTCGCGATCAACGGAGACTGAGAAACTGCTCCGAAA
GCAGTACTCTTTGACGGAAAGCACCAATTATCTGTTGTCTACAGGCACTA
CTGCGCTAGCTGCCACGCAGTTATACGCTGCCGGAAGTTTGGAGCCGGCA
GCCGCTATGGCAGTGTTTTCGGCGGTGTTAGGTATGACGTACTTGAGAAA
GTTGGCAAAAATCAACAAGCCCGATCGGTACAGTTAA