Gvermi12318.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12318.t1
Unique NameGvermi12318.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length467
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4196172..4197572 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705539.1
Preferred nameCDC73
PFAMsCDC73_C,CDC73_N
Max annot lvl2759|Eukaryota
KEGG koko:K15175
GOsGO:0000122,GO:0000428,GO:0000988,GO:0000989,GO:0000993,GO:0001076,GO:0001098,GO:0001099,GO:0001558,GO:0001654,GO:0001704,GO:0001706,GO:0001711,GO:0001745,GO:0002009,GO:0002165,GO:0002237,GO:0002682,GO:0002683,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005737,GO:0005829,GO:0006139,GO:0006325,GO:0006351,GO:0006354,GO:0006355,GO:0006357,GO:0006366,GO:0006368,GO:0006378,GO:0006396,GO:0006397,GO:0006464,GO:0006513,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0007346,GO:0007369,GO:0007423,GO:0007444,GO:0007472,GO:0007476,GO:0007478,GO:0007480,GO:0007492,GO:0007552,GO:0007560,GO:0008023,GO:0008134,GO:0008150,GO:0008152,GO:0008285,GO:0008407,GO:0008586,GO:0008587,GO:0008589,GO:0009058,GO:0009059,GO:0009605,GO:0009607,GO:0009617,GO:0009653,GO:0009790,GO:0009791,GO:0009886,GO:0009887,GO:0009888,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010390,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010646,GO:0010647,GO:0010941,GO:0010948,GO:0016043,GO:0016070,GO:0016071,GO:0016567,GO:0016569,GO:0016570,GO:0016574,GO:0016591,GO:0016593,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019827,GO:0019899,GO:0022416,GO:0022607,GO:0022613,GO:0022618,GO:0023051,GO:0023056,GO:0030111,GO:0030154,GO:0030177,GO:0030880,GO:0031123,GO:0031124,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031440,GO:0031442,GO:0031647,GO:0031648,GO:0031974,GO:0031981,GO:0032446,GO:0032496,GO:0032501,GO:0032502,GO:0032774,GO:0032784,GO:0032786,GO:0032968,GO:0032991,GO:0033523,GO:0033993,GO:0034243,GO:0034402,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0035107,GO:0035114,GO:0035120,GO:0035218,GO:0035220,GO:0035239,GO:0035295,GO:0035987,GO:0036211,GO:0040008,GO:0042127,GO:0042221,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043170,GO:0043175,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043631,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044877,GO:0045165,GO:0045595,GO:0045596,GO:0045637,GO:0045638,GO:0045786,GO:0045787,GO:0045880,GO:0045892,GO:0045893,GO:0045930,GO:0045934,GO:0045935,GO:0045944,GO:0046483,GO:0048145,GO:0048147,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048563,GO:0048569,GO:0048583,GO:0048584,GO:0048592,GO:0048598,GO:0048646,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048749,GO:0048856,GO:0048869,GO:0050678,GO:0050680,GO:0050684,GO:0050685,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051128,GO:0051171,GO:0051172,GO:0051173,GO:0051239,GO:0051241,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051704,GO:0051707,GO:0051716,GO:0051726,GO:0055029,GO:0060255,GO:0060429,GO:0060548,GO:0060562,GO:0060795,GO:0060828,GO:0061695,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070063,GO:0070647,GO:0070887,GO:0071216,GO:0071219,GO:0071222,GO:0071310,GO:0071396,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090068,GO:0090263,GO:0090304,GO:0090596,GO:0097659,GO:0098727,GO:0140110,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1901700,GO:1901701,GO:1901987,GO:1901988,GO:1901989,GO:1901990,GO:1901991,GO:1902494,GO:1902679,GO:1902680,GO:1902806,GO:1902807,GO:1902808,GO:1903311,GO:1903313,GO:1903506,GO:1903507,GO:1903508,GO:1903706,GO:1903707,GO:1904837,GO:1990234,GO:2000026,GO:2000045,GO:2000112,GO:2000113,GO:2000134,GO:2001141
Evalue3.97e-55
EggNOG OGsCOG5157@1|root,KOG3786@2759|Eukaryota
Descriptionrecruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex
COG categoryK
BRITEko00000,ko03021
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12318Gvermi12318Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4196172..4197572 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12318.t1.start1Gvermi12318.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4196172..4196174 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12318.t1.CDS1Gvermi12318.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4196172..4197572 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12318.t1.exon1Gvermi12318.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4196172..4197572 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12318.t1.stop1Gvermi12318.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4197570..4197572 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12318.t1Gvermi12318.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4196172..4197572 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12318.t1 ID=Gvermi12318.t1|Name=Gvermi12318.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=467bp
MVAALIGPLAELRRAIIAGESIAMDDNHIIINSNTRLEKATPTEFHSMRG
RGNPYALATLYLQYTHHDKPYTDYYNACDNAKTGHVLPVDKKDVVAYLRG
EIETSPNIEIPKSEASKSAPGTARFKQVPNSSTKPSEDEITKAPRPSAKP
SAVSSAPQVKEKFSFAQYRNRVRDQRSLDSIMIVKDVDFTALREKLNQHV
IDSKSGKIVQGDADQGNDAQPAYDPRGDRYTSNEERFWRENMGSDFQNLG
IDMSGSFKDIPSTAGSSNPNTNKRTQATTSARRASSPPKKPKRAQSGAIP
IIIVPVGFNNLICHGNAVEFFQNNHYVSTEELVKRNVAPIAKASREELHR
VPGGNCSRAKYYIVSNPSRLTSDEWDNVVSVVCSGREWQFKNWPIYGGGV
KELFRKVHAIHFHYDDTAPAGDTELWPIKKIAISRSMRHTDHQVCSQFWS
SLDEFLRRGKGKYLRY*
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spliced messenger RNA

>Gvermi12318.t1 ID=Gvermi12318.t1|Name=Gvermi12318.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1401bp|location=Sequence derived from alignment at ScGOVlb_3404:4196172..4197572+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGCCGCTTTGATTGGCCCATTGGCCGAGCTCCGTAGGGCTATCAT
CGCAGGGGAAAGCATTGCAATGGACGACAACCACATCATCATTAATTCGA
ATACACGTCTGGAAAAGGCAACACCCACAGAGTTTCATTCCATGAGAGGT
CGAGGCAACCCTTACGCACTTGCAACCCTCTATTTACAATATACGCATCA
CGACAAACCTTATACCGATTATTACAACGCCTGTGACAATGCGAAAACGG
GTCATGTGTTGCCAGTTGATAAAAAGGACGTCGTGGCTTACCTTCGCGGC
GAGATCGAGACTTCCCCCAATATCGAGATTCCAAAATCCGAAGCGAGCAA
GTCCGCCCCTGGGACTGCTAGATTTAAACAAGTACCAAACTCTTCCACAA
AGCCATCCGAGGATGAGATAACTAAAGCTCCAAGGCCGTCCGCAAAGCCT
TCTGCCGTTAGCTCAGCTCCTCAAGTCAAGGAAAAGTTTTCCTTTGCACA
ATATCGCAATCGCGTTCGCGATCAGAGATCCCTGGACTCGATCATGATTG
TGAAGGACGTAGATTTCACCGCGCTTCGGGAAAAGCTCAATCAGCACGTA
ATCGACAGTAAAAGTGGAAAGATTGTACAGGGTGACGCTGATCAAGGGAA
CGATGCACAACCTGCATATGATCCGCGGGGTGATCGCTACACCAGCAACG
AAGAAAGATTTTGGAGAGAAAATATGGGTTCAGACTTTCAAAATCTCGGT
ATTGATATGAGTGGTTCGTTCAAAGATATACCTTCCACTGCTGGTTCGTC
CAATCCCAACACGAACAAGAGGACCCAGGCCACGACCAGCGCGAGAAGAG
CAAGTTCGCCTCCAAAGAAACCAAAACGAGCGCAAAGCGGTGCAATACCA
ATCATCATTGTTCCAGTTGGATTTAACAATCTAATTTGTCATGGAAACGC
TGTGGAATTCTTTCAGAACAACCATTACGTATCCACCGAAGAGCTCGTAA
AACGGAATGTGGCTCCAATTGCTAAAGCATCGCGCGAAGAACTGCATCGT
GTCCCCGGTGGGAATTGCTCACGCGCAAAGTATTACATTGTAAGTAATCC
TAGCAGACTGACCTCCGACGAGTGGGATAATGTCGTTTCCGTGGTCTGCA
GTGGACGTGAATGGCAGTTCAAGAATTGGCCAATCTATGGTGGTGGCGTG
AAAGAGTTATTTCGGAAAGTTCACGCAATTCACTTCCATTACGACGATAC
AGCTCCTGCAGGAGACACCGAATTGTGGCCGATTAAGAAAATTGCGATTT
CACGTTCTATGCGACATACGGATCATCAAGTCTGTTCGCAGTTTTGGAGC
TCACTGGATGAGTTTCTGAGAAGGGGGAAGGGAAAGTATCTGCGCTACTG
A
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protein sequence of Gvermi12318.t1

>Gvermi12318.t1 ID=Gvermi12318.t1|Name=Gvermi12318.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=467bp
MVAALIGPLAELRRAIIAGESIAMDDNHIIINSNTRLEKATPTEFHSMRG
RGNPYALATLYLQYTHHDKPYTDYYNACDNAKTGHVLPVDKKDVVAYLRG
EIETSPNIEIPKSEASKSAPGTARFKQVPNSSTKPSEDEITKAPRPSAKP
SAVSSAPQVKEKFSFAQYRNRVRDQRSLDSIMIVKDVDFTALREKLNQHV
IDSKSGKIVQGDADQGNDAQPAYDPRGDRYTSNEERFWRENMGSDFQNLG
IDMSGSFKDIPSTAGSSNPNTNKRTQATTSARRASSPPKKPKRAQSGAIP
IIIVPVGFNNLICHGNAVEFFQNNHYVSTEELVKRNVAPIAKASREELHR
VPGGNCSRAKYYIVSNPSRLTSDEWDNVVSVVCSGREWQFKNWPIYGGGV
KELFRKVHAIHFHYDDTAPAGDTELWPIKKIAISRSMRHTDHQVCSQFWS
SLDEFLRRGKGKYLRY*
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mRNA from alignment at ScGOVlb_3404:4196172..4197572+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12318.t1 ID=Gvermi12318.t1|Name=Gvermi12318.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1401bp|location=Sequence derived from alignment at ScGOVlb_3404:4196172..4197572+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTTGCCGCTTTGATTGGCCCATTGGCCGAGCTCCGTAGGGCTATCAT
CGCAGGGGAAAGCATTGCAATGGACGACAACCACATCATCATTAATTCGA
ATACACGTCTGGAAAAGGCAACACCCACAGAGTTTCATTCCATGAGAGGT
CGAGGCAACCCTTACGCACTTGCAACCCTCTATTTACAATATACGCATCA
CGACAAACCTTATACCGATTATTACAACGCCTGTGACAATGCGAAAACGG
GTCATGTGTTGCCAGTTGATAAAAAGGACGTCGTGGCTTACCTTCGCGGC
GAGATCGAGACTTCCCCCAATATCGAGATTCCAAAATCCGAAGCGAGCAA
GTCCGCCCCTGGGACTGCTAGATTTAAACAAGTACCAAACTCTTCCACAA
AGCCATCCGAGGATGAGATAACTAAAGCTCCAAGGCCGTCCGCAAAGCCT
TCTGCCGTTAGCTCAGCTCCTCAAGTCAAGGAAAAGTTTTCCTTTGCACA
ATATCGCAATCGCGTTCGCGATCAGAGATCCCTGGACTCGATCATGATTG
TGAAGGACGTAGATTTCACCGCGCTTCGGGAAAAGCTCAATCAGCACGTA
ATCGACAGTAAAAGTGGAAAGATTGTACAGGGTGACGCTGATCAAGGGAA
CGATGCACAACCTGCATATGATCCGCGGGGTGATCGCTACACCAGCAACG
AAGAAAGATTTTGGAGAGAAAATATGGGTTCAGACTTTCAAAATCTCGGT
ATTGATATGAGTGGTTCGTTCAAAGATATACCTTCCACTGCTGGTTCGTC
CAATCCCAACACGAACAAGAGGACCCAGGCCACGACCAGCGCGAGAAGAG
CAAGTTCGCCTCCAAAGAAACCAAAACGAGCGCAAAGCGGTGCAATACCA
ATCATCATTGTTCCAGTTGGATTTAACAATCTAATTTGTCATGGAAACGC
TGTGGAATTCTTTCAGAACAACCATTACGTATCCACCGAAGAGCTCGTAA
AACGGAATGTGGCTCCAATTGCTAAAGCATCGCGCGAAGAACTGCATCGT
GTCCCCGGTGGGAATTGCTCACGCGCAAAGTATTACATTGTAAGTAATCC
TAGCAGACTGACCTCCGACGAGTGGGATAATGTCGTTTCCGTGGTCTGCA
GTGGACGTGAATGGCAGTTCAAGAATTGGCCAATCTATGGTGGTGGCGTG
AAAGAGTTATTTCGGAAAGTTCACGCAATTCACTTCCATTACGACGATAC
AGCTCCTGCAGGAGACACCGAATTGTGGCCGATTAAGAAAATTGCGATTT
CACGTTCTATGCGACATACGGATCATCAAGTCTGTTCGCAGTTTTGGAGC
TCACTGGATGAGTTTCTGAGAAGGGGGAAGGGAAAGTATCTGCGCTACTG
A
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4196172..4197572+

>Gvermi12318.t1 ID=Gvermi12318.t1|Name=Gvermi12318.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1401bp|location=Sequence derived from alignment at ScGOVlb_3404:4196172..4197572+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTTGCCGCTTTGATTGGCCCATTGGCCGAGCTCCGTAGGGCTATCAT
CGCAGGGGAAAGCATTGCAATGGACGACAACCACATCATCATTAATTCGA
ATACACGTCTGGAAAAGGCAACACCCACAGAGTTTCATTCCATGAGAGGT
CGAGGCAACCCTTACGCACTTGCAACCCTCTATTTACAATATACGCATCA
CGACAAACCTTATACCGATTATTACAACGCCTGTGACAATGCGAAAACGG
GTCATGTGTTGCCAGTTGATAAAAAGGACGTCGTGGCTTACCTTCGCGGC
GAGATCGAGACTTCCCCCAATATCGAGATTCCAAAATCCGAAGCGAGCAA
GTCCGCCCCTGGGACTGCTAGATTTAAACAAGTACCAAACTCTTCCACAA
AGCCATCCGAGGATGAGATAACTAAAGCTCCAAGGCCGTCCGCAAAGCCT
TCTGCCGTTAGCTCAGCTCCTCAAGTCAAGGAAAAGTTTTCCTTTGCACA
ATATCGCAATCGCGTTCGCGATCAGAGATCCCTGGACTCGATCATGATTG
TGAAGGACGTAGATTTCACCGCGCTTCGGGAAAAGCTCAATCAGCACGTA
ATCGACAGTAAAAGTGGAAAGATTGTACAGGGTGACGCTGATCAAGGGAA
CGATGCACAACCTGCATATGATCCGCGGGGTGATCGCTACACCAGCAACG
AAGAAAGATTTTGGAGAGAAAATATGGGTTCAGACTTTCAAAATCTCGGT
ATTGATATGAGTGGTTCGTTCAAAGATATACCTTCCACTGCTGGTTCGTC
CAATCCCAACACGAACAAGAGGACCCAGGCCACGACCAGCGCGAGAAGAG
CAAGTTCGCCTCCAAAGAAACCAAAACGAGCGCAAAGCGGTGCAATACCA
ATCATCATTGTTCCAGTTGGATTTAACAATCTAATTTGTCATGGAAACGC
TGTGGAATTCTTTCAGAACAACCATTACGTATCCACCGAAGAGCTCGTAA
AACGGAATGTGGCTCCAATTGCTAAAGCATCGCGCGAAGAACTGCATCGT
GTCCCCGGTGGGAATTGCTCACGCGCAAAGTATTACATTGTAAGTAATCC
TAGCAGACTGACCTCCGACGAGTGGGATAATGTCGTTTCCGTGGTCTGCA
GTGGACGTGAATGGCAGTTCAAGAATTGGCCAATCTATGGTGGTGGCGTG
AAAGAGTTATTTCGGAAAGTTCACGCAATTCACTTCCATTACGACGATAC
AGCTCCTGCAGGAGACACCGAATTGTGGCCGATTAAGAAAATTGCGATTT
CACGTTCTATGCGACATACGGATCATCAAGTCTGTTCGCAGTTTTGGAGC
TCACTGGATGAGTTTCTGAGAAGGGGGAAGGGAAAGTATCTGCGCTACTG
A
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