Gvermi12315.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12315.t1
Unique NameGvermi12315.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length381
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4178464..4180108 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7237.FBpp0300597
PFAMsPkinase
Max annot lvl33208|Metazoa
KEGG koko:K08957
KEGG Pathwayko04310,ko04340,ko04341,ko05165,ko05224,ko05225,ko05226,map04310,map04340,map04341,map05165,map05224,map05225,map05226
GOsGO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006897,GO:0006909,GO:0008150,GO:0008152,GO:0008360,GO:0009987,GO:0016192,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018105,GO:0018193,GO:0018209,GO:0019538,GO:0022603,GO:0022604,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0050789,GO:0050793,GO:0050794,GO:0051128,GO:0051179,GO:0051234,GO:0065007,GO:0065008,GO:0071704,GO:0098657,GO:0140096,GO:1901564
Evalue1.6e-40
EggNOG OGsKOG1164@1|root,KOG1163@2759|Eukaryota,39KVS@33154|Opisthokonta,3CNVH@33208|Metazoa,3E51W@33213|Bilateria,41UC5@6656|Arthropoda,3SHFG@50557|Insecta,44YCV@7147|Diptera,45T07@7214|Drosophilidae
EC2.7.11.1
DescriptionIt is involved in the biological process described with protein phosphorylation
COG categoryT
BRITEko00000,ko00001,ko01000,ko01001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12315Gvermi12315Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4178464..4180108 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12315.t1Gvermi12315.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4178464..4180108 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12315.t1.start1Gvermi12315.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4178464..4178466 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12315.t1.CDS1Gvermi12315.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4178464..4179599 +
Gvermi12315.t1.CDS2Gvermi12315.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4180102..4180108 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12315.t1.exon1Gvermi12315.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4178464..4179599 +
Gvermi12315.t1.exon2Gvermi12315.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4180102..4180108 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12315.t1.intron1Gvermi12315.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 4179600..4180101 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12315.t1.stop1Gvermi12315.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4180106..4180108 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12315.t1 ID=Gvermi12315.t1|Name=Gvermi12315.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=381bp
MDIGTVVADRFTIVQRLSHVGHGTLYLACDPNHRIYVLKAEDASRPRCTV
KSEIAIYAALAHSFIDTPVLGIPRIFYHGTHVHNAMQFYVLVMEYLERSL
FTRMVDNGGCLSLKTVLMVGIQMLRILEDIHDRGFIHRDVKPHNILTGHS
ATDCSSIFLCDFGLAKYMPFHTHPDSHAACVYGTFDYASRRALQSMEQGR
CDDLESLVYTLIFLRYGSLPWQHIPFPPDGRESAAARAIYFDYLWKDLPP
EIKIFVDYVKCLHVSEKPDYEYLRTLLKVSLAAAGLANDGQFEWSPPAKF
LTSSYSRSDDAEHEHALRVAALRRHAARPDPAAEPAEPAAPSAHGSLGRT
SSHTRAAPPSPPPPRPVEDISPRAAEHTPT*
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spliced messenger RNA

>Gvermi12315.t1 ID=Gvermi12315.t1|Name=Gvermi12315.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1143bp|location=Sequence derived from alignment at ScGOVlb_3404:4178464..4180108+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACATCGGCACCGTCGTCGCCGACCGCTTCACAATCGTCCAAAGGCT
CAGCCACGTGGGGCACGGCACCCTGTACCTGGCGTGCGACCCCAACCACC
GCATCTACGTCCTCAAGGCGGAGGACGCCAGCAGGCCGCGCTGCACCGTC
AAGAGCGAGATCGCCATCTACGCCGCCCTGGCCCACAGCTTCATCGACAC
CCCCGTGCTGGGCATCCCGCGCATCTTCTACCACGGCACCCACGTCCACA
ACGCCATGCAGTTCTACGTGCTCGTCATGGAGTACCTGGAGCGCTCGCTG
TTCACCCGCATGGTCGACAACGGCGGCTGCCTCTCcctcaagaccgtcct
catggtcggcattcagatgctccgcatcctggaggacatccacgaccgcg
gcttcatccaccgcgacgtcaagccgcacaacatCCTCACCGGCCACTCC
GCCACCGACTGCTCTTCCATCTTCCTCTGCGACTTTGGCCTCGCCAAGTA
CATGCCCTTCCACACCCACCCCGACTCGCACGCCGCCTGCGTCTACGGCA
CCTTCGACTACGCCTCGCGCAGGGCGCTGCAGAGCATGGAGCAGGGCCGC
TGCGACGACCTCGAGTCGCTCGTCTACACCCTCATCTTCCTGCGCTACGG
CTCGCTCCCGTGGCAGCACATCCCGTTCCCACCGGACGGCCGCGAGAGCG
CCGCCGCCCGCGCCATCTACTTTGACTACCTGTGGAAGGACCTCCCGCCG
GAGATCAAGATCTTTGTCGACTACGTCAAGTGCCTGCACGTCAGCGAGAA
GCCCGACTACGAGTACCTGCGCACCCTGCTCAAAGTCTCGCTCGCCGCCG
CGGGGCTCGCCAACGACGGCCAGTTCGAGTGGTCGCCGCCCGCCAAGTTC
CTCACCTCCTCCTACTCCCGCTCCGACGACGCTGAGCACGAGCACGCCCT
GCGCGTCGCCGCCCTGCGCCGCCACGCCGCGCGCCCCGACCCCGCCGCCG
AGCCCGCCGAGCCCGCCGCCCCCAGCGCCCACGGCAGCCTGGGCCGCACA
AGCAGCCACACGCGCGCCGCCCCGCCTTCGCCGCCCCCCCCACGCCCCGT
CGAGGACATCTCGCCGCGCGCCGCCGAGCATAcgccCACATAG
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protein sequence of Gvermi12315.t1

>Gvermi12315.t1 ID=Gvermi12315.t1|Name=Gvermi12315.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=381bp
MDIGTVVADRFTIVQRLSHVGHGTLYLACDPNHRIYVLKAEDASRPRCTV
KSEIAIYAALAHSFIDTPVLGIPRIFYHGTHVHNAMQFYVLVMEYLERSL
FTRMVDNGGCLSLKTVLMVGIQMLRILEDIHDRGFIHRDVKPHNILTGHS
ATDCSSIFLCDFGLAKYMPFHTHPDSHAACVYGTFDYASRRALQSMEQGR
CDDLESLVYTLIFLRYGSLPWQHIPFPPDGRESAAARAIYFDYLWKDLPP
EIKIFVDYVKCLHVSEKPDYEYLRTLLKVSLAAAGLANDGQFEWSPPAKF
LTSSYSRSDDAEHEHALRVAALRRHAARPDPAAEPAEPAAPSAHGSLGRT
SSHTRAAPPSPPPPRPVEDISPRAAEHTPT*
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mRNA from alignment at ScGOVlb_3404:4178464..4180108+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12315.t1 ID=Gvermi12315.t1|Name=Gvermi12315.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1645bp|location=Sequence derived from alignment at ScGOVlb_3404:4178464..4180108+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACATCGGCACCGTCGTCGCCGACCGCTTCACAATCGTCCAAAGGCT
CAGCCACGTGGGGCACGGCACCCTGTACCTGGCGTGCGACCCCAACCACC
GCATCTACGTCCTCAAGGCGGAGGACGCCAGCAGGCCGCGCTGCACCGTC
AAGAGCGAGATCGCCATCTACGCCGCCCTGGCCCACAGCTTCATCGACAC
CCCCGTGCTGGGCATCCCGCGCATCTTCTACCACGGCACCCACGTCCACA
ACGCCATGCAGTTCTACGTGCTCGTCATGGAGTACCTGGAGCGCTCGCTG
TTCACCCGCATGGTCGACAACGGCGGCTGCCTCTCcctcaagaccgtcct
catggtcggcattcagatgctccgcatcctggaggacatccacgaccgcg
gcttcatccaccgcgacgtcaagccgcacaacatCCTCACCGGCCACTCC
GCCACCGACTGCTCTTCCATCTTCCTCTGCGACTTTGGCCTCGCCAAGTA
CATGCCCTTCCACACCCACCCCGACTCGCACGCCGCCTGCGTCTACGGCA
CCTTCGACTACGCCTCGCGCAGGGCGCTGCAGAGCATGGAGCAGGGCCGC
TGCGACGACCTCGAGTCGCTCGTCTACACCCTCATCTTCCTGCGCTACGG
CTCGCTCCCGTGGCAGCACATCCCGTTCCCACCGGACGGCCGCGAGAGCG
CCGCCGCCCGCGCCATCTACTTTGACTACCTGTGGAAGGACCTCCCGCCG
GAGATCAAGATCTTTGTCGACTACGTCAAGTGCCTGCACGTCAGCGAGAA
GCCCGACTACGAGTACCTGCGCACCCTGCTCAAAGTCTCGCTCGCCGCCG
CGGGGCTCGCCAACGACGGCCAGTTCGAGTGGTCGCCGCCCGCCAAGTTC
CTCACCTCCTCCTACTCCCGCTCCGACGACGCTGAGCACGAGCACGCCCT
GCGCGTCGCCGCCCTGCGCCGCCACGCCGCGCGCCCCGACCCCGCCGCCG
AGCCCGCCGAGCCCGCCGCCCCCAGCGCCCACGGCAGCCTGGGCCGCACA
AGCAGCCACACGCGCGCCGCCCCGCCTTCGCCGCCCCCCCCACGCCCCGT
CGAGGACATCTCGCCGCGCGCCGCCGAGCATAcgccgtcgccgccgccca
ccccccccgccgccgccgccgccgccgccgccgccgccgccgccgACGCG
CTTGCGGCCCGCGACTcgcgcgccgtgggcgccgcgctgcgccgcggacg
ccgccgccgccgccgcggcgtcgcccgcgccATCGCAAGCTTCTTCGGCG
CGCTGCTCGCGGCTGGCGCGTAGAGGCCGCACGCTTGCGCGGCGCCGGCG
GCGGCTCACACGTCTGCCCCGCCCTTGCCAGCTGCGCGCGCGCGCGCGCG
CGCGCCACGGCACGGCACGGCGCGCGGGGGGCCCGCAATGAACCTGCCTC
GAGTGGGCGCGAGGGCATGACCGTCGTGAGGGCTGCTCGGGGTGGGCGAC
GCACGTCTTGCTCGCGCGCGCACGGGTTCTTGCGCGCGCTTGTGTGCGCG
GCGAGCGATAAAAGGCGCAAGCGCTTGATGGCTTGCTGCGGCGCTGTGCT
CACTCACGCTGCGCGACGCAATAAAGCAAACGCTGCAGCACATAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4178464..4180108+

>Gvermi12315.t1 ID=Gvermi12315.t1|Name=Gvermi12315.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1143bp|location=Sequence derived from alignment at ScGOVlb_3404:4178464..4180108+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACATCGGCACCGTCGTCGCCGACCGCTTCACAATCGTCCAAAGGCT
CAGCCACGTGGGGCACGGCACCCTGTACCTGGCGTGCGACCCCAACCACC
GCATCTACGTCCTCAAGGCGGAGGACGCCAGCAGGCCGCGCTGCACCGTC
AAGAGCGAGATCGCCATCTACGCCGCCCTGGCCCACAGCTTCATCGACAC
CCCCGTGCTGGGCATCCCGCGCATCTTCTACCACGGCACCCACGTCCACA
ACGCCATGCAGTTCTACGTGCTCGTCATGGAGTACCTGGAGCGCTCGCTG
TTCACCCGCATGGTCGACAACGGCGGCTGCCTCTCcctcaagaccgtcct
catggtcggcattcagatgctccgcatcctggaggacatccacgaccgcg
gcttcatccaccgcgacgtcaagccgcacaacatCCTCACCGGCCACTCC
GCCACCGACTGCTCTTCCATCTTCCTCTGCGACTTTGGCCTCGCCAAGTA
CATGCCCTTCCACACCCACCCCGACTCGCACGCCGCCTGCGTCTACGGCA
CCTTCGACTACGCCTCGCGCAGGGCGCTGCAGAGCATGGAGCAGGGCCGC
TGCGACGACCTCGAGTCGCTCGTCTACACCCTCATCTTCCTGCGCTACGG
CTCGCTCCCGTGGCAGCACATCCCGTTCCCACCGGACGGCCGCGAGAGCG
CCGCCGCCCGCGCCATCTACTTTGACTACCTGTGGAAGGACCTCCCGCCG
GAGATCAAGATCTTTGTCGACTACGTCAAGTGCCTGCACGTCAGCGAGAA
GCCCGACTACGAGTACCTGCGCACCCTGCTCAAAGTCTCGCTCGCCGCCG
CGGGGCTCGCCAACGACGGCCAGTTCGAGTGGTCGCCGCCCGCCAAGTTC
CTCACCTCCTCCTACTCCCGCTCCGACGACGCTGAGCACGAGCACGCCCT
GCGCGTCGCCGCCCTGCGCCGCCACGCCGCGCGCCCCGACCCCGCCGCCG
AGCCCGCCGAGCCCGCCGCCCCCAGCGCCCACGGCAGCCTGGGCCGCACA
AGCAGCCACACGCGCGCCGCCCCGCCTTCGCCGCCCCCCCCACGCCCCGT
CGAGGACATCTCGCCGCGCGCCGCCGAGCATAcgccCACATAG
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