Gvermi12314.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12314.t1
Unique Name	Gvermi12314.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	669

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:4173274..4175280 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	314271.RB2654_08177
PFAMs	Glyco_transf_7C
Max annot lvl	28211\|Alphaproteobacteria
Evalue	9.51e-28
EggNOG OGs	COG1216@1\|root,COG1216@2\|Bacteria,1MZBS@1224\|Proteobacteria,2UEUD@28211\|Alphaproteobacteria
Description	N-terminal domain of galactosyltransferase
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12314	Gvermi12314	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3404 4173274..4175280 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12314.t1.stop1	Gvermi12314.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_3404 4173274..4173276 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12314.t1.CDS1	Gvermi12314.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3404 4173274..4175280 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12314.t1.exon1	Gvermi12314.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3404 4173274..4175280 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12314.t1.start1	Gvermi12314.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_3404 4175278..4175280 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12314.t1	Gvermi12314.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3404 4173274..4175280 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3404:4173274..4175280-
coding sequence from alignment at ScGOVlb_3404:4173274..4175280-

mRNA sequence

>Gvermi12314.t1 ID=Gvermi12314.t1|Name=Gvermi12314.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=669bp
LSDDVRRLVQADLDADPRWWRHTNALRAAADLARSVANASYAPRFPLWWL
APGLSVVAACKDRSHSLLRALPTWLNASAVHQVVVVDWASSPPVSSLLPP
ALRTHPKLLLVTVRHQPRWVLSAAYNLAARLATRTRLLKLDCDTVLRPDF
FHAHPLRPRTFFAGDWHKLHTPASDKLHANGLLYVPTPLFLAVGGYDERI
TTYGWDDSDIVSRLSALATPNPIHYHTVAHIPHNASLRVANSESILPPTN
PHAAAVEIQRNRLLLTHFHLPQWRPTSEHTLWNVHRRCADALCRNLTVTA
RAANTVTPALHLVSDADVLDVSKRAIRLILKRYGVDLLPKSLSLPFYKHL
IHKVAHAPSYPSVVFSLRGGCVSRLMAHVHVKLATSPSSPAYVPPPPPYL
GWRVHQLWPFPSPECSCPFFTPFLAVDDELRSAWSDALNPLRRAPAASDA
SRALRHFTQRSLAMNISDSVSRWFASRNRPRSPRQRVMFASVACHVRPSS
VGEPQRQALRALLRAVAPSDAILDAVARLHSHSVPCALDSPLLRRARVER
LVPPPLRRPAFDALSDPELLRMAARWSPDLVPEARPPVAERAYALFAALF
LNETQPSARAPRERAAAMSSEQRQLVSELSARVAALFSGCVSTPFQYLDA
YPELAIIIASFVCSGACT*

spliced messenger RNA

>Gvermi12314.t1 ID=Gvermi12314.t1|Name=Gvermi12314.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2007bp|location=Sequence derived from alignment at ScGOVlb_3404:4173274..4175280- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGTCCGACGACGTGCGCCGCCTCGTCCAGGCCGACCTCGACGCCGACCC
CCGCTGGTGGCGCCACACCAACGCCCTCCGCGCCGCCGCCGACCTCGCCC
GCTCCGTCGCCAACGCCTCCTACGCCCCGCGCTTCCCCCTTTGGTGGCTC
GCCCCGGGCCTCTCCGTCGTCGCCGCCTGCAAGGACCGCTCCCACTCCCT
CCTCCGCGCCCTGCCCACCTGGCTAAACGCCTCCGCCGTCCACCAGGTCG
TCGTCGTCGACTGGGCCTCCTCCCCGCCCGTCTCCTCCCTCCTCCCGCCC
GCGCTGCGCACCCACCCCAAGCTCCTGCTCGTCACCGTCCGCCACCAGCC
GCGCTGGGTCCTCTCCGCCGCCTACAACCTCGCCGCCCGCCTGGCCACCC
GCACGCGCCTCCTCAAACTCGACTGCGACACCGTGCTGCGCCCCGACTTT
TTCCACGCCCACCCCCTGCGCCCGCGCACCTTCTTCGCCGGCGACTGGCA
CAAGCTCCACACCCCGGCCTCCGACAAGCTGCACGCCAACGGCCTGCTCT
ACGTCCCCACGCCCCTCTTCCTCGCCGTCGGCGGCTACGACGAGCGCATC
ACAACCTACGGCTGGGACGACTCCGACATTGTGTCGCGACTGTCAGCCCT
CGCCACCCCCAACCCCATCCACTACCACACCGTCGCCCACATACCGCACA
ACGCCTCCCTGCGCGTCGCCAACTCCGAAAGCATTCTGCCGCCCACCAAT
CCGCACGCCGCCGCCGTCGAGATCCAGCGCAACCGCCTGCTGCTCACCCA
CTTCCACCTCCCGCAGTGGCGCCCCACGTCCGAGCACACCTTGTGGAACG
TGCACCGCCGCTGCGCCGACGCCCTGTGCCGCAACCTCACCGTCACCGCC
CGCGCCGCCAACACCGTCACCCCGGCGCTGCACCTCGTCTCCGACGCCGA
CGTCCTCGATGTGTCCAAACGCGCCATCCGCCTCATCCTCAAGAGGTACG
GCGTCGACCTGCTGCCCAAGTCCCTGTCGCTCCCCTTCTACAAGCACCTC
ATCCACAAGGTTGCCCACGCGCCCTCATACCCCTCCGTCGTCTTCTCCCT
CCGCGGCGGCTGCGTCTCCCGCCTCATGGCCCACGTCCACGTCAAGCTCG
CCACCAGCCCCTCCTCGCCCGCCTACGTCCCGCCGCCGCCCCCGTACCTG
GGCTGGCGCGTGCACCAACTCTGGCCCTTCCCGTCGCCCGAGTGCTCGTG
CCCCTTTTTCACCCCGTTTCTCGCCGTGGACGACGAGCTCCGCTCCGCGT
GGTCCGACGCCCTCAACCCGCTGCGCCGCGCGCCGGCCGCCAGCGACGCG
TCGCGCGCGCTGCGCCATTTCACCCAGCGCTCGCTCGCCATGAACATCTC
CGACAGCGTGTCGCGCTGGTTTGCGTCGCGCAATCGCCCGCGCTCGCCGC
GCCAGCGCGTCATGTTTGCGAGCGTTGCGTGCCACGTGCGCCCGTCGAGC
GTCGGCGAGCCGCAGCGCCAGGCGCTGCGCGCGCTGCTGCGCGCCGTCGC
CCCGAGCGACGCCATCCTGGACGCCGTGGCGCGGCTGCACTCGCACTCGG
TGCCGTGCGCGCTGGACTCGCCGCTGCTGCGGCGCGCGCGCGTCGAGCGC
CTCGTGCCGCCGCCGCTGCGCCGCCCTGCCTTCGACGCCCTCTCCGACCC
CGAGCTCCTGCGCATGGCCGCCAGGTGGAGCCCCGACCTTGTGCCGGAGG
CGCGACCGCCCGTCGCCGAGAGGGCGTACGCTCTCTTCGCCGCCCTGTTC
TTGAACGAGACGCAACCATCTGCGCGAGCGCCCCGTGAGCGCGCGGCCGC
AATGTCGTCGGAGCAGCGCCAACTTGTTTCCGAGCTGTCCGCCCGCGTCG
CGGCGCTGTTTTCCGGATGCGTTTCCACTCCGTTCCAGTACCTTGACGCC
TATCCGGAGCTGGCAATTATTATCGCCAGCTTCGTGTGTTCCGGCGCTTG
CACATGA

protein sequence of Gvermi12314.t1

>Gvermi12314.t1 ID=Gvermi12314.t1|Name=Gvermi12314.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=669bp
LSDDVRRLVQADLDADPRWWRHTNALRAAADLARSVANASYAPRFPLWWL
APGLSVVAACKDRSHSLLRALPTWLNASAVHQVVVVDWASSPPVSSLLPP
ALRTHPKLLLVTVRHQPRWVLSAAYNLAARLATRTRLLKLDCDTVLRPDF
FHAHPLRPRTFFAGDWHKLHTPASDKLHANGLLYVPTPLFLAVGGYDERI
TTYGWDDSDIVSRLSALATPNPIHYHTVAHIPHNASLRVANSESILPPTN
PHAAAVEIQRNRLLLTHFHLPQWRPTSEHTLWNVHRRCADALCRNLTVTA
RAANTVTPALHLVSDADVLDVSKRAIRLILKRYGVDLLPKSLSLPFYKHL
IHKVAHAPSYPSVVFSLRGGCVSRLMAHVHVKLATSPSSPAYVPPPPPYL
GWRVHQLWPFPSPECSCPFFTPFLAVDDELRSAWSDALNPLRRAPAASDA
SRALRHFTQRSLAMNISDSVSRWFASRNRPRSPRQRVMFASVACHVRPSS
VGEPQRQALRALLRAVAPSDAILDAVARLHSHSVPCALDSPLLRRARVER
LVPPPLRRPAFDALSDPELLRMAARWSPDLVPEARPPVAERAYALFAALF
LNETQPSARAPRERAAAMSSEQRQLVSELSARVAALFSGCVSTPFQYLDA
YPELAIIIASFVCSGACT*

mRNA from alignment at ScGOVlb_3404:4173274..4175280-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12314.t1 ID=Gvermi12314.t1|Name=Gvermi12314.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2007bp|location=Sequence derived from alignment at ScGOVlb_3404:4173274..4175280- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGTCCGACGACGTGCGCCGCCTCGTCCAGGCCGACCTCGACGCCGACCC
CCGCTGGTGGCGCCACACCAACGCCCTCCGCGCCGCCGCCGACCTCGCCC
GCTCCGTCGCCAACGCCTCCTACGCCCCGCGCTTCCCCCTTTGGTGGCTC
GCCCCGGGCCTCTCCGTCGTCGCCGCCTGCAAGGACCGCTCCCACTCCCT
CCTCCGCGCCCTGCCCACCTGGCTAAACGCCTCCGCCGTCCACCAGGTCG
TCGTCGTCGACTGGGCCTCCTCCCCGCCCGTCTCCTCCCTCCTCCCGCCC
GCGCTGCGCACCCACCCCAAGCTCCTGCTCGTCACCGTCCGCCACCAGCC
GCGCTGGGTCCTCTCCGCCGCCTACAACCTCGCCGCCCGCCTGGCCACCC
GCACGCGCCTCCTCAAACTCGACTGCGACACCGTGCTGCGCCCCGACTTT
TTCCACGCCCACCCCCTGCGCCCGCGCACCTTCTTCGCCGGCGACTGGCA
CAAGCTCCACACCCCGGCCTCCGACAAGCTGCACGCCAACGGCCTGCTCT
ACGTCCCCACGCCCCTCTTCCTCGCCGTCGGCGGCTACGACGAGCGCATC
ACAACCTACGGCTGGGACGACTCCGACATTGTGTCGCGACTGTCAGCCCT
CGCCACCCCCAACCCCATCCACTACCACACCGTCGCCCACATACCGCACA
ACGCCTCCCTGCGCGTCGCCAACTCCGAAAGCATTCTGCCGCCCACCAAT
CCGCACGCCGCCGCCGTCGAGATCCAGCGCAACCGCCTGCTGCTCACCCA
CTTCCACCTCCCGCAGTGGCGCCCCACGTCCGAGCACACCTTGTGGAACG
TGCACCGCCGCTGCGCCGACGCCCTGTGCCGCAACCTCACCGTCACCGCC
CGCGCCGCCAACACCGTCACCCCGGCGCTGCACCTCGTCTCCGACGCCGA
CGTCCTCGATGTGTCCAAACGCGCCATCCGCCTCATCCTCAAGAGGTACG
GCGTCGACCTGCTGCCCAAGTCCCTGTCGCTCCCCTTCTACAAGCACCTC
ATCCACAAGGTTGCCCACGCGCCCTCATACCCCTCCGTCGTCTTCTCCCT
CCGCGGCGGCTGCGTCTCCCGCCTCATGGCCCACGTCCACGTCAAGCTCG
CCACCAGCCCCTCCTCGCCCGCCTACGTCCCGCCGCCGCCCCCGTACCTG
GGCTGGCGCGTGCACCAACTCTGGCCCTTCCCGTCGCCCGAGTGCTCGTG
CCCCTTTTTCACCCCGTTTCTCGCCGTGGACGACGAGCTCCGCTCCGCGT
GGTCCGACGCCCTCAACCCGCTGCGCCGCGCGCCGGCCGCCAGCGACGCG
TCGCGCGCGCTGCGCCATTTCACCCAGCGCTCGCTCGCCATGAACATCTC
CGACAGCGTGTCGCGCTGGTTTGCGTCGCGCAATCGCCCGCGCTCGCCGC
GCCAGCGCGTCATGTTTGCGAGCGTTGCGTGCCACGTGCGCCCGTCGAGC
GTCGGCGAGCCGCAGCGCCAGGCGCTGCGCGCGCTGCTGCGCGCCGTCGC
CCCGAGCGACGCCATCCTGGACGCCGTGGCGCGGCTGCACTCGCACTCGG
TGCCGTGCGCGCTGGACTCGCCGCTGCTGCGGCGCGCGCGCGTCGAGCGC
CTCGTGCCGCCGCCGCTGCGCCGCCCTGCCTTCGACGCCCTCTCCGACCC
CGAGCTCCTGCGCATGGCCGCCAGGTGGAGCCCCGACCTTGTGCCGGAGG
CGCGACCGCCCGTCGCCGAGAGGGCGTACGCTCTCTTCGCCGCCCTGTTC
TTGAACGAGACGCAACCATCTGCGCGAGCGCCCCGTGAGCGCGCGGCCGC
AATGTCGTCGGAGCAGCGCCAACTTGTTTCCGAGCTGTCCGCCCGCGTCG
CGGCGCTGTTTTCCGGATGCGTTTCCACTCCGTTCCAGTACCTTGACGCC
TATCCGGAGCTGGCAATTATTATCGCCAGCTTCGTGTGTTCCGGCGCTTG
CACATGA

Coding sequence (CDS) from alignment at ScGOVlb_3404:4173274..4175280-

>Gvermi12314.t1 ID=Gvermi12314.t1|Name=Gvermi12314.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2007bp|location=Sequence derived from alignment at ScGOVlb_3404:4173274..4175280- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGTCCGACGACGTGCGCCGCCTCGTCCAGGCCGACCTCGACGCCGACCC
CCGCTGGTGGCGCCACACCAACGCCCTCCGCGCCGCCGCCGACCTCGCCC
GCTCCGTCGCCAACGCCTCCTACGCCCCGCGCTTCCCCCTTTGGTGGCTC
GCCCCGGGCCTCTCCGTCGTCGCCGCCTGCAAGGACCGCTCCCACTCCCT
CCTCCGCGCCCTGCCCACCTGGCTAAACGCCTCCGCCGTCCACCAGGTCG
TCGTCGTCGACTGGGCCTCCTCCCCGCCCGTCTCCTCCCTCCTCCCGCCC
GCGCTGCGCACCCACCCCAAGCTCCTGCTCGTCACCGTCCGCCACCAGCC
GCGCTGGGTCCTCTCCGCCGCCTACAACCTCGCCGCCCGCCTGGCCACCC
GCACGCGCCTCCTCAAACTCGACTGCGACACCGTGCTGCGCCCCGACTTT
TTCCACGCCCACCCCCTGCGCCCGCGCACCTTCTTCGCCGGCGACTGGCA
CAAGCTCCACACCCCGGCCTCCGACAAGCTGCACGCCAACGGCCTGCTCT
ACGTCCCCACGCCCCTCTTCCTCGCCGTCGGCGGCTACGACGAGCGCATC
ACAACCTACGGCTGGGACGACTCCGACATTGTGTCGCGACTGTCAGCCCT
CGCCACCCCCAACCCCATCCACTACCACACCGTCGCCCACATACCGCACA
ACGCCTCCCTGCGCGTCGCCAACTCCGAAAGCATTCTGCCGCCCACCAAT
CCGCACGCCGCCGCCGTCGAGATCCAGCGCAACCGCCTGCTGCTCACCCA
CTTCCACCTCCCGCAGTGGCGCCCCACGTCCGAGCACACCTTGTGGAACG
TGCACCGCCGCTGCGCCGACGCCCTGTGCCGCAACCTCACCGTCACCGCC
CGCGCCGCCAACACCGTCACCCCGGCGCTGCACCTCGTCTCCGACGCCGA
CGTCCTCGATGTGTCCAAACGCGCCATCCGCCTCATCCTCAAGAGGTACG
GCGTCGACCTGCTGCCCAAGTCCCTGTCGCTCCCCTTCTACAAGCACCTC
ATCCACAAGGTTGCCCACGCGCCCTCATACCCCTCCGTCGTCTTCTCCCT
CCGCGGCGGCTGCGTCTCCCGCCTCATGGCCCACGTCCACGTCAAGCTCG
CCACCAGCCCCTCCTCGCCCGCCTACGTCCCGCCGCCGCCCCCGTACCTG
GGCTGGCGCGTGCACCAACTCTGGCCCTTCCCGTCGCCCGAGTGCTCGTG
CCCCTTTTTCACCCCGTTTCTCGCCGTGGACGACGAGCTCCGCTCCGCGT
GGTCCGACGCCCTCAACCCGCTGCGCCGCGCGCCGGCCGCCAGCGACGCG
TCGCGCGCGCTGCGCCATTTCACCCAGCGCTCGCTCGCCATGAACATCTC
CGACAGCGTGTCGCGCTGGTTTGCGTCGCGCAATCGCCCGCGCTCGCCGC
GCCAGCGCGTCATGTTTGCGAGCGTTGCGTGCCACGTGCGCCCGTCGAGC
GTCGGCGAGCCGCAGCGCCAGGCGCTGCGCGCGCTGCTGCGCGCCGTCGC
CCCGAGCGACGCCATCCTGGACGCCGTGGCGCGGCTGCACTCGCACTCGG
TGCCGTGCGCGCTGGACTCGCCGCTGCTGCGGCGCGCGCGCGTCGAGCGC
CTCGTGCCGCCGCCGCTGCGCCGCCCTGCCTTCGACGCCCTCTCCGACCC
CGAGCTCCTGCGCATGGCCGCCAGGTGGAGCCCCGACCTTGTGCCGGAGG
CGCGACCGCCCGTCGCCGAGAGGGCGTACGCTCTCTTCGCCGCCCTGTTC
TTGAACGAGACGCAACCATCTGCGCGAGCGCCCCGTGAGCGCGCGGCCGC
AATGTCGTCGGAGCAGCGCCAACTTGTTTCCGAGCTGTCCGCCCGCGTCG
CGGCGCTGTTTTCCGGATGCGTTTCCACTCCGTTCCAGTACCTTGACGCC
TATCCGGAGCTGGCAATTATTATCGCCAGCTTCGTGTGTTCCGGCGCTTG
CACATGA