Gvermi12312.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12312.t1
Unique NameGvermi12312.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length513
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4167345..4168883 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12312Gvermi12312Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4167345..4168883 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12312.t1.start1Gvermi12312.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4167345..4167347 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12312.t1.CDS1Gvermi12312.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4167345..4168883 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12312.t1.exon1Gvermi12312.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4167345..4168883 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12312.t1.stop1Gvermi12312.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4168881..4168883 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12312.t1Gvermi12312.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4167345..4168883 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12312.t1 ID=Gvermi12312.t1|Name=Gvermi12312.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=513bp
MSRSASGNPPPVSDHSLHPAPTTPTPAAPPRPPLAIPTSYPQPGRPGRTS
SASAPSSVASSHPPRPKSAPSKPVNSEALPPAFEALIQLDASIYEKINPE
TTPPQHSDGVPPLPPPQPSAPLLVIQGPLAPDPQSSEMLYYAFINTRSFN
FPLMPSTTCRRIGPKAFRIKVDRRRFVIMLAPSTNLKMVEGFIALLQWFC
TWKDAEGSHIPARMDESLSSVSPGSSSSQGGSAFLEKVGDKSVQKIEKLA
DRVNNKTQRWLDKRHVAAAETRERGGGKNLSLGGKVTIGALNATQKVVET
TAKVTGAATDKIASTVGRSVTKTVTKPLANAPNGSKRRTFYEKLASGCLT
AGRIYVTADRQARLYVANSVDSAALVTGAKYGSEAEHACRQLGKISVDAV
RVWKFPSDLGFKSIMQAGMEEELKRKGESPRPPPPPTYANEPAHSLLISP
TPKDSVPSASSQAPVSNPPSFPPTPSSFTPPAANDLQMISHVPDETVMHV
PFQNLSVNLPKK*
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spliced messenger RNA

>Gvermi12312.t1 ID=Gvermi12312.t1|Name=Gvermi12312.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1539bp|location=Sequence derived from alignment at ScGOVlb_3404:4167345..4168883+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTCGCTCGGCTTCCGGGAACCCTCCTCCCGTCTCCGACCACAGCTT
GCACCCCGCGCCCACCACGCCCACACCAGCGGCGCCGCCGCGACCGCCAC
TGGCAATCCCTACTAGTTACCCGCAACCCGGTCGCCCCGGTCGTACTTCT
TCGGCATCCGCCCCTAGTTCTGTCGCTTCTTCTCATCCGCCGCGCCCCAA
GTCAGCGCCGTCCAAGCCTGTCAACAGCGAGGCTCTTCCGCCGGCCTTTG
AGGCGCTCATCCAGCTTGACGCCTCCATATACGAGAAGATCAACCCCGAA
ACCACACCACCTCAGCACTCTGATGGTGTTCCGCCCCTTCCACCCCCGCA
GCCTTCCGCCCCCCTTCTCGTCATCCAAGGCCCGCTTGCTCCCGATCCTC
AATCATCGGAAATGCTCTATTACGCCTTCATTAACACGCGCTCATTCAAT
TTCCCTCTCATGCCGTCCACTACGTGCCGGCGAATTGGCCCCAAGGCATT
CCGTATAAAGGTGGACCGCCGTCGCTTTGTCATCATGCTTGCCCCCTCCA
CAAATTTGAAGATGGTTGAGGGTTTCATCGCTTTGTTGCAATGGTTTTGC
ACGTGGAAGGATGCAGAGGGATCGCATATTCCCGCGCGCATGGATGAATC
TTTATCTTCTGTATCTCCCGGCTCGTCTTCTTCGCAGGGCGGTTCCGCTT
TCCTCGAGAAAGTCGGCGATAAGAGCGTTCAAAAGATTGAAAAACTCGCG
GACCGCGTAAACAACAAAACGCAGCGTTGGCTGGATAAGCGCCATGTCGC
TGCGGCTGAAACGCGTGAGAGAGGCGGAGGTAAAAACCTCAGTCTCGGCG
GCAAAGTCACAATAGGCGCGCTCAACGCCACACAAAAAGTAGTTGAAACC
ACCGCAAAGGTAACGGGCGCCGCCACTGACAAGATTGCTAGCACCGTTGG
ACGTTCCGTCACGAAAACTGTCACCAAACCTCTAGCAAATGCCCCAAATG
GTAGCAAGAGAAGAACGTTTTACGAAAAGCTGGCTTCTGGATGCTTAACT
GCTGGCCGCATTTATGTCACTGCTGATCGTCAGGCAAGGCTATACGTTGC
CAATTCCGTAGACTCTGCGGCGCTTGTGACGGGTGCAAAGTATGGATCAG
AGGCAGAACATGCCTGTCGTCAGCTTGGGAAAATATCAGTCGACGCAGTA
CGAGTGTGGAAGTTCCCATCAGATTTGGGATTCAAGTCCATTATGCAAGC
AGGCATGGAAGAGGAGTTGAAGCGGAAAGGAGAGTCTCCAAGACCACCAC
CACCGCCTACCTACGCGAATGAACCCGCTCATAGCTTACTCATCAGTCCC
ACCCCAAAAGATTCCGTACCCAGCGCATCTTCTCAGGCACCGGTATCAAA
CCCGCCGTCTTTCCCGCCTACGCCCTCCTCATTTACACCGCCTGCCGCTA
ATGATCTCCAGATGATATCTCACGTCCCAGATGAAACTGTCATGCATGTT
CCATTTCAAAACTTGAGCGTAAATCTTCCAAAGAAATAG
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protein sequence of Gvermi12312.t1

>Gvermi12312.t1 ID=Gvermi12312.t1|Name=Gvermi12312.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=513bp
MSRSASGNPPPVSDHSLHPAPTTPTPAAPPRPPLAIPTSYPQPGRPGRTS
SASAPSSVASSHPPRPKSAPSKPVNSEALPPAFEALIQLDASIYEKINPE
TTPPQHSDGVPPLPPPQPSAPLLVIQGPLAPDPQSSEMLYYAFINTRSFN
FPLMPSTTCRRIGPKAFRIKVDRRRFVIMLAPSTNLKMVEGFIALLQWFC
TWKDAEGSHIPARMDESLSSVSPGSSSSQGGSAFLEKVGDKSVQKIEKLA
DRVNNKTQRWLDKRHVAAAETRERGGGKNLSLGGKVTIGALNATQKVVET
TAKVTGAATDKIASTVGRSVTKTVTKPLANAPNGSKRRTFYEKLASGCLT
AGRIYVTADRQARLYVANSVDSAALVTGAKYGSEAEHACRQLGKISVDAV
RVWKFPSDLGFKSIMQAGMEEELKRKGESPRPPPPPTYANEPAHSLLISP
TPKDSVPSASSQAPVSNPPSFPPTPSSFTPPAANDLQMISHVPDETVMHV
PFQNLSVNLPKK*
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mRNA from alignment at ScGOVlb_3404:4167345..4168883+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12312.t1 ID=Gvermi12312.t1|Name=Gvermi12312.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1539bp|location=Sequence derived from alignment at ScGOVlb_3404:4167345..4168883+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGTCGCTCGGCTTCCGGGAACCCTCCTCCCGTCTCCGACCACAGCTT
GCACCCCGCGCCCACCACGCCCACACCAGCGGCGCCGCCGCGACCGCCAC
TGGCAATCCCTACTAGTTACCCGCAACCCGGTCGCCCCGGTCGTACTTCT
TCGGCATCCGCCCCTAGTTCTGTCGCTTCTTCTCATCCGCCGCGCCCCAA
GTCAGCGCCGTCCAAGCCTGTCAACAGCGAGGCTCTTCCGCCGGCCTTTG
AGGCGCTCATCCAGCTTGACGCCTCCATATACGAGAAGATCAACCCCGAA
ACCACACCACCTCAGCACTCTGATGGTGTTCCGCCCCTTCCACCCCCGCA
GCCTTCCGCCCCCCTTCTCGTCATCCAAGGCCCGCTTGCTCCCGATCCTC
AATCATCGGAAATGCTCTATTACGCCTTCATTAACACGCGCTCATTCAAT
TTCCCTCTCATGCCGTCCACTACGTGCCGGCGAATTGGCCCCAAGGCATT
CCGTATAAAGGTGGACCGCCGTCGCTTTGTCATCATGCTTGCCCCCTCCA
CAAATTTGAAGATGGTTGAGGGTTTCATCGCTTTGTTGCAATGGTTTTGC
ACGTGGAAGGATGCAGAGGGATCGCATATTCCCGCGCGCATGGATGAATC
TTTATCTTCTGTATCTCCCGGCTCGTCTTCTTCGCAGGGCGGTTCCGCTT
TCCTCGAGAAAGTCGGCGATAAGAGCGTTCAAAAGATTGAAAAACTCGCG
GACCGCGTAAACAACAAAACGCAGCGTTGGCTGGATAAGCGCCATGTCGC
TGCGGCTGAAACGCGTGAGAGAGGCGGAGGTAAAAACCTCAGTCTCGGCG
GCAAAGTCACAATAGGCGCGCTCAACGCCACACAAAAAGTAGTTGAAACC
ACCGCAAAGGTAACGGGCGCCGCCACTGACAAGATTGCTAGCACCGTTGG
ACGTTCCGTCACGAAAACTGTCACCAAACCTCTAGCAAATGCCCCAAATG
GTAGCAAGAGAAGAACGTTTTACGAAAAGCTGGCTTCTGGATGCTTAACT
GCTGGCCGCATTTATGTCACTGCTGATCGTCAGGCAAGGCTATACGTTGC
CAATTCCGTAGACTCTGCGGCGCTTGTGACGGGTGCAAAGTATGGATCAG
AGGCAGAACATGCCTGTCGTCAGCTTGGGAAAATATCAGTCGACGCAGTA
CGAGTGTGGAAGTTCCCATCAGATTTGGGATTCAAGTCCATTATGCAAGC
AGGCATGGAAGAGGAGTTGAAGCGGAAAGGAGAGTCTCCAAGACCACCAC
CACCGCCTACCTACGCGAATGAACCCGCTCATAGCTTACTCATCAGTCCC
ACCCCAAAAGATTCCGTACCCAGCGCATCTTCTCAGGCACCGGTATCAAA
CCCGCCGTCTTTCCCGCCTACGCCCTCCTCATTTACACCGCCTGCCGCTA
ATGATCTCCAGATGATATCTCACGTCCCAGATGAAACTGTCATGCATGTT
CCATTTCAAAACTTGAGCGTAAATCTTCCAAAGAAATAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4167345..4168883+

>Gvermi12312.t1 ID=Gvermi12312.t1|Name=Gvermi12312.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1539bp|location=Sequence derived from alignment at ScGOVlb_3404:4167345..4168883+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGTCGCTCGGCTTCCGGGAACCCTCCTCCCGTCTCCGACCACAGCTT
GCACCCCGCGCCCACCACGCCCACACCAGCGGCGCCGCCGCGACCGCCAC
TGGCAATCCCTACTAGTTACCCGCAACCCGGTCGCCCCGGTCGTACTTCT
TCGGCATCCGCCCCTAGTTCTGTCGCTTCTTCTCATCCGCCGCGCCCCAA
GTCAGCGCCGTCCAAGCCTGTCAACAGCGAGGCTCTTCCGCCGGCCTTTG
AGGCGCTCATCCAGCTTGACGCCTCCATATACGAGAAGATCAACCCCGAA
ACCACACCACCTCAGCACTCTGATGGTGTTCCGCCCCTTCCACCCCCGCA
GCCTTCCGCCCCCCTTCTCGTCATCCAAGGCCCGCTTGCTCCCGATCCTC
AATCATCGGAAATGCTCTATTACGCCTTCATTAACACGCGCTCATTCAAT
TTCCCTCTCATGCCGTCCACTACGTGCCGGCGAATTGGCCCCAAGGCATT
CCGTATAAAGGTGGACCGCCGTCGCTTTGTCATCATGCTTGCCCCCTCCA
CAAATTTGAAGATGGTTGAGGGTTTCATCGCTTTGTTGCAATGGTTTTGC
ACGTGGAAGGATGCAGAGGGATCGCATATTCCCGCGCGCATGGATGAATC
TTTATCTTCTGTATCTCCCGGCTCGTCTTCTTCGCAGGGCGGTTCCGCTT
TCCTCGAGAAAGTCGGCGATAAGAGCGTTCAAAAGATTGAAAAACTCGCG
GACCGCGTAAACAACAAAACGCAGCGTTGGCTGGATAAGCGCCATGTCGC
TGCGGCTGAAACGCGTGAGAGAGGCGGAGGTAAAAACCTCAGTCTCGGCG
GCAAAGTCACAATAGGCGCGCTCAACGCCACACAAAAAGTAGTTGAAACC
ACCGCAAAGGTAACGGGCGCCGCCACTGACAAGATTGCTAGCACCGTTGG
ACGTTCCGTCACGAAAACTGTCACCAAACCTCTAGCAAATGCCCCAAATG
GTAGCAAGAGAAGAACGTTTTACGAAAAGCTGGCTTCTGGATGCTTAACT
GCTGGCCGCATTTATGTCACTGCTGATCGTCAGGCAAGGCTATACGTTGC
CAATTCCGTAGACTCTGCGGCGCTTGTGACGGGTGCAAAGTATGGATCAG
AGGCAGAACATGCCTGTCGTCAGCTTGGGAAAATATCAGTCGACGCAGTA
CGAGTGTGGAAGTTCCCATCAGATTTGGGATTCAAGTCCATTATGCAAGC
AGGCATGGAAGAGGAGTTGAAGCGGAAAGGAGAGTCTCCAAGACCACCAC
CACCGCCTACCTACGCGAATGAACCCGCTCATAGCTTACTCATCAGTCCC
ACCCCAAAAGATTCCGTACCCAGCGCATCTTCTCAGGCACCGGTATCAAA
CCCGCCGTCTTTCCCGCCTACGCCCTCCTCATTTACACCGCCTGCCGCTA
ATGATCTCCAGATGATATCTCACGTCCCAGATGAAACTGTCATGCATGTT
CCATTTCAAAACTTGAGCGTAAATCTTCCAAAGAAATAG
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