Gvermi12306.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12306.t1
Unique NameGvermi12306.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length100
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4148540..4149211 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12306Gvermi12306Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4148540..4149211 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12306.t1Gvermi12306.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4148540..4149211 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12306.t1.start1Gvermi12306.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4148540..4148542 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12306.t1.CDS1Gvermi12306.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4148540..4148692 +
Gvermi12306.t1.CDS2Gvermi12306.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4148760..4148833 +
Gvermi12306.t1.CDS3Gvermi12306.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4149139..4149211 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12306.t1.exon1Gvermi12306.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4148540..4148692 +
Gvermi12306.t1.exon2Gvermi12306.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4148760..4148833 +
Gvermi12306.t1.exon3Gvermi12306.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4149139..4149211 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12306.t1.intron1Gvermi12306.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 4148693..4148759 +
Gvermi12306.t1.intron2Gvermi12306.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 4148834..4149138 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12306.t1.stop1Gvermi12306.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4149209..4149211 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12306.t1 ID=Gvermi12306.t1|Name=Gvermi12306.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=100bp
MLTQKRMSASNMSPDPLLKPGCRSLFTRHREDGLKFLPGPQVSATEELIL
ELLGTWIEDDSRSLADWYPKLPRMKRCTLQIHLSFGYLKPLRISLRHHI*
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spliced messenger RNA

>Gvermi12306.t1 ID=Gvermi12306.t1|Name=Gvermi12306.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=300bp|location=Sequence derived from alignment at ScGOVlb_3404:4148540..4149211+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTAACTCAAAAGCGAATGTCCGCTTCAAACATGAGTCCGGATCCGCT
ACTCAAGCCTGGCTGTCGCTCACTGTTCACCAGACATCGGGAGGATGGGT
TGAAATTTTTGCCCGGACCGCAGGTTTCCGCAACAGAAGAGTTGATCCTA
GAGTTGTTGGGCACTTGGATTGAAGATGACTCGAGATCCCTAGCGGATTG
GTACCCGAAGTTGCCCCGAATGAAGAGGTGCACATTACAGATTCACCTCT
CATTTGGATATCTGAAACCTTTGCGAATATCTTTGCGGCATCACATCTGA
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protein sequence of Gvermi12306.t1

>Gvermi12306.t1 ID=Gvermi12306.t1|Name=Gvermi12306.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=100bp
MLTQKRMSASNMSPDPLLKPGCRSLFTRHREDGLKFLPGPQVSATEELIL
ELLGTWIEDDSRSLADWYPKLPRMKRCTLQIHLSFGYLKPLRISLRHHI*
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mRNA from alignment at ScGOVlb_3404:4148540..4149211+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12306.t1 ID=Gvermi12306.t1|Name=Gvermi12306.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=672bp|location=Sequence derived from alignment at ScGOVlb_3404:4148540..4149211+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTAACTCAAAAGCGAATGTCCGCTTCAAACATGAGTCCGGATCCGCT
ACTCAAGCCTGGCTGTCGCTCACTGTTCACCAGACATCGGGAGGATGGGT
TGAAATTTTTGCCCGGACCGCAGGTTTCCGCAACAGAAGAGTTGATCCTA
GAGGTGAAGCGATCGCAATATGTACTGAAGCGGTTGGATCAATCACATTT
TCGCTGATCGGTACCCGAAGTTGTTGGGCACTTGGATTGAAGATGACTCG
AGATCCCTAGCGGATTGGTACCCGAAGTTGCCCCGAATGAAGAGGTACGT
TCTTATTTTCCGTCCCACACTTCCCGAATAGATCGAAGTGACGAAGCTTG
CTATCATAGGAAGTGCCGTCTGAAGCACGTGGCAGTCTGCAAGGTATGGA
ACCTGCTTCAGTCGAGAATTCTGAGTCATGTCGTTGATAATCCTCGGATG
GTCCGCAAGACTCGTATTATCCTGTCGCAGTTGATTCTCTTGCATTTCCA
TCGTCGTGATTAATGTAGCACCACCAACTGATCCGTCTATTCAGGCAAAC
ATATTATGTTTTTTCATGTGAGCGTCTAACATATACATGTGGTTGTCAGG
TGCACATTACAGATTCACCTCTCATTTGGATATCTGAAACCTTTGCGAAT
ATCTTTGCGGCATCACATCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4148540..4149211+

>Gvermi12306.t1 ID=Gvermi12306.t1|Name=Gvermi12306.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=300bp|location=Sequence derived from alignment at ScGOVlb_3404:4148540..4149211+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTAACTCAAAAGCGAATGTCCGCTTCAAACATGAGTCCGGATCCGCT
ACTCAAGCCTGGCTGTCGCTCACTGTTCACCAGACATCGGGAGGATGGGT
TGAAATTTTTGCCCGGACCGCAGGTTTCCGCAACAGAAGAGTTGATCCTA
GAGTTGTTGGGCACTTGGATTGAAGATGACTCGAGATCCCTAGCGGATTG
GTACCCGAAGTTGCCCCGAATGAAGAGGTGCACATTACAGATTCACCTCT
CATTTGGATATCTGAAACCTTTGCGAATATCTTTGCGGCATCACATCTGA
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