Gvermi12305.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12305.t1
Unique NameGvermi12305.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length519
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4146167..4147723 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12305Gvermi12305Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4146167..4147723 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12305.t1.stop1Gvermi12305.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4146167..4146169 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12305.t1.CDS1Gvermi12305.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4146167..4147723 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12305.t1.exon1Gvermi12305.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4146167..4147723 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12305.t1.start1Gvermi12305.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4147721..4147723 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12305.t1Gvermi12305.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4146167..4147723 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12305.t1 ID=Gvermi12305.t1|Name=Gvermi12305.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=519bp
MIRASPFVLFLCLQVYCTAFVYRTATNITWDSWVLSDPSAEETWSETAAA
IETLKDGSSIVATDRQLHNSESVPNIYKIHPSQDVAWSMQSKLVKGSPFA
MVINELFDVVYIVVSSSNLSGSDFQGHVLRFSGISSNGTSDDIGSKVSEA
IFFTTESTQGATKLFDCAINSINGDVYVTGGTSGSLYEESRGKGDIIVVR
LAPSGEVLNAVQFGNREDEFGRAIDISADGSEIVMAAHRGLEGGGSEALM
YRLSAESLQILEGPQMLIEQGATPLFTVNDIAIGAPAIDGSVTTFMTGKA
LAIPDRDIDLFMHVFAVIKDDVSNVPVYIDGTSNGKGADQGVAVRVAKDG
NAYCIGTSEAVDGARKILLLVISPTGQILLLKSLDGHESMNQQLKPTAMT
LTQVSNRTTVRFVGYTQDQNGSRATFATVSPEIGAVRPFEGFGSIVEEAA
VDDSGGNEDGSVQEKKGFVMNKNMVIIICSAGVGALALTAILAMIVFLHA
SSRNPGGEASRRPLDSTI*
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spliced messenger RNA

>Gvermi12305.t1 ID=Gvermi12305.t1|Name=Gvermi12305.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1557bp|location=Sequence derived from alignment at ScGOVlb_3404:4146167..4147723- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTCGAGCGTCCCCGTTCGTCTTATTTTTATGTTTGCAAGTTTACTG
CACAGCATTTGTTTACAGAACAGCAACAAACATTACTTGGGATTCGTGGG
TTTTGAGCGATCCCTCGGCAGAGGAAACATGGTCCGAGACGGCTGCGGCG
ATTGAAACCCTGAAAGACGGGAGTTCAATAGTCGCAACAGACCGACAACT
TCACAATTCGGAGTCCGTACCCAATATTTACAAGATACACCCGTCGCAAG
ATGTTGCATGGAGTATGCAAAGCAAGCTTGTGAAAGGGTCTCCTTTTGCG
ATGGTGATCAACGAATTGTTTGATGTCGTCTATATCGTGGTCTCCTCATC
AAATTTGTCAGGTTCTGACTTCCAAGGACATGTTCTTCGCTTTTCCGGAA
TATCGAGCAACGGAACTTCTGATGATATTGGTTCGAAAGTAAGCGAGGCC
ATATTCTTCACTACAGAATCGACACAGGGTGCGACCAAGTTGTTTGATTG
TGCTATAAATTCCATAAACGGTGACGTGTATGTAACTGGAGGGACTTCAG
GTTCCCTTTACGAAGAGTCTCGCGGCAAGGGTGACATAATTGTTGTTCGT
TTGGCGCCATCAGGAGAAGTTCTAAACGCGGTGCAGTTTGGAAATCGAGA
AGATGAATTTGGCAGAGCGATTGACATCAGTGCAGACGGGTCTGAAATTG
TAATGGCAGCGCACAGAGGTTTGGAAGGCGGGGGAAGTGAGGCCTTAATG
TATCGATTGAGCGCTGAAAGTCTGCAGATTCTGGAGGGACCTCAAATGCT
AATTGAGCAAGGGGCTACCCCATTATTCACAGTCAACGATATTGCAATTG
GTGCCCCAGCTATCGATGGTTCCGTCACCACATTTATGACCGGCAAAGCT
CTCGCAATACCGGATCGAGACATCGATTTGTTCATGCATGTATTTGCTGT
GATCAAGGATGATGTTTCAAATGTTCCAGTTTATATTGACGGGACATCCA
ATGGTAAAGGTGCAGATCAGGGAGTTGCTGTTCGCGTCGCCAAAGATGGA
AATGCTTATTGCATAGGAACTTCAGAAGCTGTTGATGGCGCTAGAAAAAT
TCTTCTTCTCGTTATTTCCCCAACTGGTCAGATATTGCTTCTAAAAAGTC
TAGATGGGCATGAAAGCATGAACCAACAACTGAAACCGACGGCAATGACT
TTGACACAAGTGTCAAACAGAACTACAGTGCGATTCGTTGGATATACGCA
AGATCAAAATGGAAGCAGGGCAACTTTTGCTACTGTCTCCCCAGAAATTG
GAGCAGTCAGACCATTCGAAGGATTTGGAAGTATAGTTGAAGAAGCAGCC
GTCGATGATAGTGGAGGTAATGAAGACGGAAGCGTGCAAGAGAAAAAAGG
ATTTGTCATGAACAAGAACATGGTCATTATAATTTGCAGTGCGGGTGTTG
GAGCGCTTGCGTTGACAGCAATTCTAGCCATGATTGTATTCTTGCACGCT
TCGTCCCGAAATCCGGGTGGTGAAGCTTCCAGAAGACCATTGGATTCAAC
CATTTGA
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protein sequence of Gvermi12305.t1

>Gvermi12305.t1 ID=Gvermi12305.t1|Name=Gvermi12305.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=519bp
MIRASPFVLFLCLQVYCTAFVYRTATNITWDSWVLSDPSAEETWSETAAA
IETLKDGSSIVATDRQLHNSESVPNIYKIHPSQDVAWSMQSKLVKGSPFA
MVINELFDVVYIVVSSSNLSGSDFQGHVLRFSGISSNGTSDDIGSKVSEA
IFFTTESTQGATKLFDCAINSINGDVYVTGGTSGSLYEESRGKGDIIVVR
LAPSGEVLNAVQFGNREDEFGRAIDISADGSEIVMAAHRGLEGGGSEALM
YRLSAESLQILEGPQMLIEQGATPLFTVNDIAIGAPAIDGSVTTFMTGKA
LAIPDRDIDLFMHVFAVIKDDVSNVPVYIDGTSNGKGADQGVAVRVAKDG
NAYCIGTSEAVDGARKILLLVISPTGQILLLKSLDGHESMNQQLKPTAMT
LTQVSNRTTVRFVGYTQDQNGSRATFATVSPEIGAVRPFEGFGSIVEEAA
VDDSGGNEDGSVQEKKGFVMNKNMVIIICSAGVGALALTAILAMIVFLHA
SSRNPGGEASRRPLDSTI*
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mRNA from alignment at ScGOVlb_3404:4146167..4147723-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12305.t1 ID=Gvermi12305.t1|Name=Gvermi12305.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1557bp|location=Sequence derived from alignment at ScGOVlb_3404:4146167..4147723- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATTCGAGCGTCCCCGTTCGTCTTATTTTTATGTTTGCAAGTTTACTG
CACAGCATTTGTTTACAGAACAGCAACAAACATTACTTGGGATTCGTGGG
TTTTGAGCGATCCCTCGGCAGAGGAAACATGGTCCGAGACGGCTGCGGCG
ATTGAAACCCTGAAAGACGGGAGTTCAATAGTCGCAACAGACCGACAACT
TCACAATTCGGAGTCCGTACCCAATATTTACAAGATACACCCGTCGCAAG
ATGTTGCATGGAGTATGCAAAGCAAGCTTGTGAAAGGGTCTCCTTTTGCG
ATGGTGATCAACGAATTGTTTGATGTCGTCTATATCGTGGTCTCCTCATC
AAATTTGTCAGGTTCTGACTTCCAAGGACATGTTCTTCGCTTTTCCGGAA
TATCGAGCAACGGAACTTCTGATGATATTGGTTCGAAAGTAAGCGAGGCC
ATATTCTTCACTACAGAATCGACACAGGGTGCGACCAAGTTGTTTGATTG
TGCTATAAATTCCATAAACGGTGACGTGTATGTAACTGGAGGGACTTCAG
GTTCCCTTTACGAAGAGTCTCGCGGCAAGGGTGACATAATTGTTGTTCGT
TTGGCGCCATCAGGAGAAGTTCTAAACGCGGTGCAGTTTGGAAATCGAGA
AGATGAATTTGGCAGAGCGATTGACATCAGTGCAGACGGGTCTGAAATTG
TAATGGCAGCGCACAGAGGTTTGGAAGGCGGGGGAAGTGAGGCCTTAATG
TATCGATTGAGCGCTGAAAGTCTGCAGATTCTGGAGGGACCTCAAATGCT
AATTGAGCAAGGGGCTACCCCATTATTCACAGTCAACGATATTGCAATTG
GTGCCCCAGCTATCGATGGTTCCGTCACCACATTTATGACCGGCAAAGCT
CTCGCAATACCGGATCGAGACATCGATTTGTTCATGCATGTATTTGCTGT
GATCAAGGATGATGTTTCAAATGTTCCAGTTTATATTGACGGGACATCCA
ATGGTAAAGGTGCAGATCAGGGAGTTGCTGTTCGCGTCGCCAAAGATGGA
AATGCTTATTGCATAGGAACTTCAGAAGCTGTTGATGGCGCTAGAAAAAT
TCTTCTTCTCGTTATTTCCCCAACTGGTCAGATATTGCTTCTAAAAAGTC
TAGATGGGCATGAAAGCATGAACCAACAACTGAAACCGACGGCAATGACT
TTGACACAAGTGTCAAACAGAACTACAGTGCGATTCGTTGGATATACGCA
AGATCAAAATGGAAGCAGGGCAACTTTTGCTACTGTCTCCCCAGAAATTG
GAGCAGTCAGACCATTCGAAGGATTTGGAAGTATAGTTGAAGAAGCAGCC
GTCGATGATAGTGGAGGTAATGAAGACGGAAGCGTGCAAGAGAAAAAAGG
ATTTGTCATGAACAAGAACATGGTCATTATAATTTGCAGTGCGGGTGTTG
GAGCGCTTGCGTTGACAGCAATTCTAGCCATGATTGTATTCTTGCACGCT
TCGTCCCGAAATCCGGGTGGTGAAGCTTCCAGAAGACCATTGGATTCAAC
CATTTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4146167..4147723-

>Gvermi12305.t1 ID=Gvermi12305.t1|Name=Gvermi12305.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1557bp|location=Sequence derived from alignment at ScGOVlb_3404:4146167..4147723- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATTCGAGCGTCCCCGTTCGTCTTATTTTTATGTTTGCAAGTTTACTG
CACAGCATTTGTTTACAGAACAGCAACAAACATTACTTGGGATTCGTGGG
TTTTGAGCGATCCCTCGGCAGAGGAAACATGGTCCGAGACGGCTGCGGCG
ATTGAAACCCTGAAAGACGGGAGTTCAATAGTCGCAACAGACCGACAACT
TCACAATTCGGAGTCCGTACCCAATATTTACAAGATACACCCGTCGCAAG
ATGTTGCATGGAGTATGCAAAGCAAGCTTGTGAAAGGGTCTCCTTTTGCG
ATGGTGATCAACGAATTGTTTGATGTCGTCTATATCGTGGTCTCCTCATC
AAATTTGTCAGGTTCTGACTTCCAAGGACATGTTCTTCGCTTTTCCGGAA
TATCGAGCAACGGAACTTCTGATGATATTGGTTCGAAAGTAAGCGAGGCC
ATATTCTTCACTACAGAATCGACACAGGGTGCGACCAAGTTGTTTGATTG
TGCTATAAATTCCATAAACGGTGACGTGTATGTAACTGGAGGGACTTCAG
GTTCCCTTTACGAAGAGTCTCGCGGCAAGGGTGACATAATTGTTGTTCGT
TTGGCGCCATCAGGAGAAGTTCTAAACGCGGTGCAGTTTGGAAATCGAGA
AGATGAATTTGGCAGAGCGATTGACATCAGTGCAGACGGGTCTGAAATTG
TAATGGCAGCGCACAGAGGTTTGGAAGGCGGGGGAAGTGAGGCCTTAATG
TATCGATTGAGCGCTGAAAGTCTGCAGATTCTGGAGGGACCTCAAATGCT
AATTGAGCAAGGGGCTACCCCATTATTCACAGTCAACGATATTGCAATTG
GTGCCCCAGCTATCGATGGTTCCGTCACCACATTTATGACCGGCAAAGCT
CTCGCAATACCGGATCGAGACATCGATTTGTTCATGCATGTATTTGCTGT
GATCAAGGATGATGTTTCAAATGTTCCAGTTTATATTGACGGGACATCCA
ATGGTAAAGGTGCAGATCAGGGAGTTGCTGTTCGCGTCGCCAAAGATGGA
AATGCTTATTGCATAGGAACTTCAGAAGCTGTTGATGGCGCTAGAAAAAT
TCTTCTTCTCGTTATTTCCCCAACTGGTCAGATATTGCTTCTAAAAAGTC
TAGATGGGCATGAAAGCATGAACCAACAACTGAAACCGACGGCAATGACT
TTGACACAAGTGTCAAACAGAACTACAGTGCGATTCGTTGGATATACGCA
AGATCAAAATGGAAGCAGGGCAACTTTTGCTACTGTCTCCCCAGAAATTG
GAGCAGTCAGACCATTCGAAGGATTTGGAAGTATAGTTGAAGAAGCAGCC
GTCGATGATAGTGGAGGTAATGAAGACGGAAGCGTGCAAGAGAAAAAAGG
ATTTGTCATGAACAAGAACATGGTCATTATAATTTGCAGTGCGGGTGTTG
GAGCGCTTGCGTTGACAGCAATTCTAGCCATGATTGTATTCTTGCACGCT
TCGTCCCGAAATCCGGGTGGTGAAGCTTCCAGAAGACCATTGGATTCAAC
CATTTGA
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