Gvermi12303.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12303.t1
Unique Name	Gvermi12303.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	288

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:4142297..4143160 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMN316CT
Max annot lvl	2759\|Eukaryota
Evalue	5.4e-61
EggNOG OGs	2CYRZ@1\|root,2S61B@2759\|Eukaryota

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12303	Gvermi12303	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3404 4142297..4143160 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12303.t1.start1	Gvermi12303.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_3404 4142297..4142299 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12303.t1.CDS1	Gvermi12303.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3404 4142297..4143160 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12303.t1.exon1	Gvermi12303.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3404 4142297..4143160 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12303.t1.stop1	Gvermi12303.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_3404 4143158..4143160 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12303.t1	Gvermi12303.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3404 4142297..4143160 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3404:4142297..4143160+
coding sequence from alignment at ScGOVlb_3404:4142297..4143160+

mRNA sequence

>Gvermi12303.t1 ID=Gvermi12303.t1|Name=Gvermi12303.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=288bp
MVAFVSVPFISSRGRFSQRSQCFLSSRPTTLRARRQWSMNNASEETSKQT
NPEPSSTPTEPEIPKEPYPGYFADMKRMGLSEEEAYAQARKAEKQSNPVK
SDKVGGAKNLFKPDGTPYAPWMAVSAEYDASVIKKRTDAVGKLAADPQSG
ELSGAGLSWKMLGDELELKWATGSEEGNKGFVVYRRAGKSDSWQKLSDYR
DKPAELASKGPDGGKYSFLVSDIQPGTWVYRVSDVDENDNVSDLSQVLVE
IESAEDTRIQKIALAALLAILALAAFIGLSLDPMSST*

spliced messenger RNA

>Gvermi12303.t1 ID=Gvermi12303.t1|Name=Gvermi12303.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=864bp|location=Sequence derived from alignment at ScGOVlb_3404:4142297..4143160+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCGCCTTCGTTTCAGTTCCTTTCATATCCTCTCGAGGAAGATTTTC
TCAACGCTCGCAATGTTTTCTGTCGTCAAGGCCCACGACGCTGCGAGCCC
GTCGCCAGTGGTCTATGAACAACGCGTCCGAAGAAACATCCAAGCAAACA
AACCCGGAACCATCTTCAACTCCCACTGAACCCGAAATTCCCAAAGAACC
TTACCCTGGATATTTCGCTGATATGAAAAGAATGGGGCTTTCTGAAGAAG
AGGCGTACGCTCAGGCGCGGAAGGCCGAGAAGCAAAGTAATCCTGTCAAG
AGTGACAAAGTTGGAGGCGCCAAGAACCTCTTCAAGCCTGACGGTACCCC
TTATGCTCCCTGGATGGCCGTTTCTGCTGAATATGATGCATCCGTTATAA
AGAAACGCACAGACGCCGTTGGGAAGCTGGCTGCGGATCCACAGAGTGGG
GAACTGAGTGGTGCTGGGCTTTCATGGAAGATGCTTGGCGACGAGTTGGA
GTTGAAATGGGCTACTGGCTCTGAGGAGGGAAACAAAGGCTTTGTTGTGT
ACAGAAGGGCTGGAAAATCAGATTCGTGGCAGAAGCTATCAGACTATCGC
GATAAACCCGCAGAACTAGCCTCAAAGGGACCTGATGGAGGTAAATACAG
TTTTCTTGTTTCGGACATACAACCCGGAACTTGGGTTTACCGGGTTTCTG
ATGTGGATGAGAATGACAACGTCTCTGATCTGTCTCAAGTTCTCGTGGAA
ATCGAATCAGCCGAAGACACGCGCATTCAAAAGATAGCTCTCGCTGCGCT
TTTGGCCATTCTTGCATTGGCGGCCTTTATCGGCCTATCGCTCGACCCCA
TGTCGAGTACTTGA

protein sequence of Gvermi12303.t1

>Gvermi12303.t1 ID=Gvermi12303.t1|Name=Gvermi12303.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=288bp
MVAFVSVPFISSRGRFSQRSQCFLSSRPTTLRARRQWSMNNASEETSKQT
NPEPSSTPTEPEIPKEPYPGYFADMKRMGLSEEEAYAQARKAEKQSNPVK
SDKVGGAKNLFKPDGTPYAPWMAVSAEYDASVIKKRTDAVGKLAADPQSG
ELSGAGLSWKMLGDELELKWATGSEEGNKGFVVYRRAGKSDSWQKLSDYR
DKPAELASKGPDGGKYSFLVSDIQPGTWVYRVSDVDENDNVSDLSQVLVE
IESAEDTRIQKIALAALLAILALAAFIGLSLDPMSST*

mRNA from alignment at ScGOVlb_3404:4142297..4143160+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12303.t1 ID=Gvermi12303.t1|Name=Gvermi12303.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=864bp|location=Sequence derived from alignment at ScGOVlb_3404:4142297..4143160+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTCGCCTTCGTTTCAGTTCCTTTCATATCCTCTCGAGGAAGATTTTC
TCAACGCTCGCAATGTTTTCTGTCGTCAAGGCCCACGACGCTGCGAGCCC
GTCGCCAGTGGTCTATGAACAACGCGTCCGAAGAAACATCCAAGCAAACA
AACCCGGAACCATCTTCAACTCCCACTGAACCCGAAATTCCCAAAGAACC
TTACCCTGGATATTTCGCTGATATGAAAAGAATGGGGCTTTCTGAAGAAG
AGGCGTACGCTCAGGCGCGGAAGGCCGAGAAGCAAAGTAATCCTGTCAAG
AGTGACAAAGTTGGAGGCGCCAAGAACCTCTTCAAGCCTGACGGTACCCC
TTATGCTCCCTGGATGGCCGTTTCTGCTGAATATGATGCATCCGTTATAA
AGAAACGCACAGACGCCGTTGGGAAGCTGGCTGCGGATCCACAGAGTGGG
GAACTGAGTGGTGCTGGGCTTTCATGGAAGATGCTTGGCGACGAGTTGGA
GTTGAAATGGGCTACTGGCTCTGAGGAGGGAAACAAAGGCTTTGTTGTGT
ACAGAAGGGCTGGAAAATCAGATTCGTGGCAGAAGCTATCAGACTATCGC
GATAAACCCGCAGAACTAGCCTCAAAGGGACCTGATGGAGGTAAATACAG
TTTTCTTGTTTCGGACATACAACCCGGAACTTGGGTTTACCGGGTTTCTG
ATGTGGATGAGAATGACAACGTCTCTGATCTGTCTCAAGTTCTCGTGGAA
ATCGAATCAGCCGAAGACACGCGCATTCAAAAGATAGCTCTCGCTGCGCT
TTTGGCCATTCTTGCATTGGCGGCCTTTATCGGCCTATCGCTCGACCCCA
TGTCGAGTACTTGA

Coding sequence (CDS) from alignment at ScGOVlb_3404:4142297..4143160+

>Gvermi12303.t1 ID=Gvermi12303.t1|Name=Gvermi12303.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=864bp|location=Sequence derived from alignment at ScGOVlb_3404:4142297..4143160+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTCGCCTTCGTTTCAGTTCCTTTCATATCCTCTCGAGGAAGATTTTC
TCAACGCTCGCAATGTTTTCTGTCGTCAAGGCCCACGACGCTGCGAGCCC
GTCGCCAGTGGTCTATGAACAACGCGTCCGAAGAAACATCCAAGCAAACA
AACCCGGAACCATCTTCAACTCCCACTGAACCCGAAATTCCCAAAGAACC
TTACCCTGGATATTTCGCTGATATGAAAAGAATGGGGCTTTCTGAAGAAG
AGGCGTACGCTCAGGCGCGGAAGGCCGAGAAGCAAAGTAATCCTGTCAAG
AGTGACAAAGTTGGAGGCGCCAAGAACCTCTTCAAGCCTGACGGTACCCC
TTATGCTCCCTGGATGGCCGTTTCTGCTGAATATGATGCATCCGTTATAA
AGAAACGCACAGACGCCGTTGGGAAGCTGGCTGCGGATCCACAGAGTGGG
GAACTGAGTGGTGCTGGGCTTTCATGGAAGATGCTTGGCGACGAGTTGGA
GTTGAAATGGGCTACTGGCTCTGAGGAGGGAAACAAAGGCTTTGTTGTGT
ACAGAAGGGCTGGAAAATCAGATTCGTGGCAGAAGCTATCAGACTATCGC
GATAAACCCGCAGAACTAGCCTCAAAGGGACCTGATGGAGGTAAATACAG
TTTTCTTGTTTCGGACATACAACCCGGAACTTGGGTTTACCGGGTTTCTG
ATGTGGATGAGAATGACAACGTCTCTGATCTGTCTCAAGTTCTCGTGGAA
ATCGAATCAGCCGAAGACACGCGCATTCAAAAGATAGCTCTCGCTGCGCT
TTTGGCCATTCTTGCATTGGCGGCCTTTATCGGCCTATCGCTCGACCCCA
TGTCGAGTACTTGA