Gvermi12301.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12301.t1
Unique Name	Gvermi12301.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	336

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:4136398..4137405 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707791.1
PFAMs	Hydrolase_4
Max annot lvl	2759\|Eukaryota
Evalue	1.5e-47
EggNOG OGs	COG1073@1\|root,KOG1552@2759\|Eukaryota
Description	palmitoyl-(protein) hydrolase activity
COG category	O

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12301	Gvermi12301	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3404 4136398..4137405 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12301.t1.start1	Gvermi12301.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_3404 4136398..4136400 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12301.t1.CDS1	Gvermi12301.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3404 4136398..4137405 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12301.t1.exon1	Gvermi12301.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3404 4136398..4137405 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12301.t1.stop1	Gvermi12301.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_3404 4137403..4137405 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12301.t1	Gvermi12301.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3404 4136398..4137405 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3404:4136398..4137405+
coding sequence from alignment at ScGOVlb_3404:4136398..4137405+

mRNA sequence

>Gvermi12301.t1 ID=Gvermi12301.t1|Name=Gvermi12301.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=336bp
MASVFWYVIGAVLAVYGVFALALLIILPAKVAKPPWHLPGPGKALQVKDI
PPSWLGATNPEQLNLPFKDVSFLTPAGLSLRGWLMSNAKSSDCHPSTVAV
VCVHGAGRDRRAFLRHAEFLTEAGFDVLLFDCSNHGASDSFPMWPRGPWP
GRAVSLGKREYVDVISAVRFLKTRGAERVAVLGTSQGASSAIIAAAKCRD
IDALVLENPFSSPEVLVRHVVTTILKKVPLPLFDVLMAPLLFRLSLFRTG
NFPATEQKKAIDHMLRVTVPVLFIHGTADLVVHHNESEILFKTAATQHKQ
LWLVDNAPHTQCFNTKPDDFRTRVTEFLRTHLFNK*

spliced messenger RNA

>Gvermi12301.t1 ID=Gvermi12301.t1|Name=Gvermi12301.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1008bp|location=Sequence derived from alignment at ScGOVlb_3404:4136398..4137405+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAAGTGTTTTTTGGTATGTAATAGGAGCAGTCTTGGCTGTCTATGG
GGTGTTCGCTTTGGCTCTATTAATAATACTGCCAGCCAAGGTGGCGAAAC
CACCATGGCATCTTCCTGGGCCGGGAAAGGCTCTGCAGGTCAAAGATATT
CCGCCTTCTTGGCTAGGAGCCACAAATCCAGAGCAACTGAACCTTCCCTT
CAAGGATGTTAGTTTTCTCACTCCTGCAGGGCTCTCGCTTAGAGGTTGGT
TGATGTCAAATGCTAAAAGCTCAGACTGCCACCCATCTACAGTCGCTGTC
GTGTGTGTCCATGGTGCCGGGCGTGATCGGCGCGCATTTTTGCGCCATGC
GGAATTCCTCACGGAAGCCGGCTTCGATGTTCTGTTATTTGACTGCTCAA
ATCATGGTGCGAGCGATAGTTTCCCCATGTGGCCTCGAGGGCCTTGGCCA
GGCCGGGCTGTATCTCTCGGGAAGCGTGAGTATGTCGATGTCATATCCGC
AGTTAGATTTCTGAAAACGCGTGGAGCAGAGCGTGTTGCCGTGCTTGGCA
CTTCTCAAGGAGCATCTTCGGCTATCATTGCTGCAGCCAAGTGTCGCGAC
ATAGATGCGTTGGTCCTCGAAAATCCTTTCTCTTCGCCGGAAGTTTTGGT
TCGCCACGTTGTCACGACAATCTTAAAAAAGGTTCCCCTACCATTGTTCG
ATGTGCTGATGGCGCCATTGCTTTTCCGACTATCGCTTTTCCGAACAGGA
AACTTCCCAGCTACGGAACAAAAGAAAGCTATTGATCACATGTTGCGGGT
AACGGTTCCCGTTCTCTTCATCCATGGCACTGCAGACCTTGTAGTACATC
ATAACGAATCGGAGATATTGTTCAAGACGGCTGCAACGCAACATAAACAA
TTATGGCTGGTTGATAATGCACCGCATACACAGTGCTTCAACACCAAGCC
CGATGATTTCCGAACCAGGGTAACTGAATTCTTGCGAACCCATCTCTTCA
ACAAATAA

protein sequence of Gvermi12301.t1

>Gvermi12301.t1 ID=Gvermi12301.t1|Name=Gvermi12301.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=336bp
MASVFWYVIGAVLAVYGVFALALLIILPAKVAKPPWHLPGPGKALQVKDI
PPSWLGATNPEQLNLPFKDVSFLTPAGLSLRGWLMSNAKSSDCHPSTVAV
VCVHGAGRDRRAFLRHAEFLTEAGFDVLLFDCSNHGASDSFPMWPRGPWP
GRAVSLGKREYVDVISAVRFLKTRGAERVAVLGTSQGASSAIIAAAKCRD
IDALVLENPFSSPEVLVRHVVTTILKKVPLPLFDVLMAPLLFRLSLFRTG
NFPATEQKKAIDHMLRVTVPVLFIHGTADLVVHHNESEILFKTAATQHKQ
LWLVDNAPHTQCFNTKPDDFRTRVTEFLRTHLFNK*

mRNA from alignment at ScGOVlb_3404:4136398..4137405+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12301.t1 ID=Gvermi12301.t1|Name=Gvermi12301.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1008bp|location=Sequence derived from alignment at ScGOVlb_3404:4136398..4137405+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCAAGTGTTTTTTGGTATGTAATAGGAGCAGTCTTGGCTGTCTATGG
GGTGTTCGCTTTGGCTCTATTAATAATACTGCCAGCCAAGGTGGCGAAAC
CACCATGGCATCTTCCTGGGCCGGGAAAGGCTCTGCAGGTCAAAGATATT
CCGCCTTCTTGGCTAGGAGCCACAAATCCAGAGCAACTGAACCTTCCCTT
CAAGGATGTTAGTTTTCTCACTCCTGCAGGGCTCTCGCTTAGAGGTTGGT
TGATGTCAAATGCTAAAAGCTCAGACTGCCACCCATCTACAGTCGCTGTC
GTGTGTGTCCATGGTGCCGGGCGTGATCGGCGCGCATTTTTGCGCCATGC
GGAATTCCTCACGGAAGCCGGCTTCGATGTTCTGTTATTTGACTGCTCAA
ATCATGGTGCGAGCGATAGTTTCCCCATGTGGCCTCGAGGGCCTTGGCCA
GGCCGGGCTGTATCTCTCGGGAAGCGTGAGTATGTCGATGTCATATCCGC
AGTTAGATTTCTGAAAACGCGTGGAGCAGAGCGTGTTGCCGTGCTTGGCA
CTTCTCAAGGAGCATCTTCGGCTATCATTGCTGCAGCCAAGTGTCGCGAC
ATAGATGCGTTGGTCCTCGAAAATCCTTTCTCTTCGCCGGAAGTTTTGGT
TCGCCACGTTGTCACGACAATCTTAAAAAAGGTTCCCCTACCATTGTTCG
ATGTGCTGATGGCGCCATTGCTTTTCCGACTATCGCTTTTCCGAACAGGA
AACTTCCCAGCTACGGAACAAAAGAAAGCTATTGATCACATGTTGCGGGT
AACGGTTCCCGTTCTCTTCATCCATGGCACTGCAGACCTTGTAGTACATC
ATAACGAATCGGAGATATTGTTCAAGACGGCTGCAACGCAACATAAACAA
TTATGGCTGGTTGATAATGCACCGCATACACAGTGCTTCAACACCAAGCC
CGATGATTTCCGAACCAGGGTAACTGAATTCTTGCGAACCCATCTCTTCA
ACAAATAA

Coding sequence (CDS) from alignment at ScGOVlb_3404:4136398..4137405+

>Gvermi12301.t1 ID=Gvermi12301.t1|Name=Gvermi12301.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1008bp|location=Sequence derived from alignment at ScGOVlb_3404:4136398..4137405+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCAAGTGTTTTTTGGTATGTAATAGGAGCAGTCTTGGCTGTCTATGG
GGTGTTCGCTTTGGCTCTATTAATAATACTGCCAGCCAAGGTGGCGAAAC
CACCATGGCATCTTCCTGGGCCGGGAAAGGCTCTGCAGGTCAAAGATATT
CCGCCTTCTTGGCTAGGAGCCACAAATCCAGAGCAACTGAACCTTCCCTT
CAAGGATGTTAGTTTTCTCACTCCTGCAGGGCTCTCGCTTAGAGGTTGGT
TGATGTCAAATGCTAAAAGCTCAGACTGCCACCCATCTACAGTCGCTGTC
GTGTGTGTCCATGGTGCCGGGCGTGATCGGCGCGCATTTTTGCGCCATGC
GGAATTCCTCACGGAAGCCGGCTTCGATGTTCTGTTATTTGACTGCTCAA
ATCATGGTGCGAGCGATAGTTTCCCCATGTGGCCTCGAGGGCCTTGGCCA
GGCCGGGCTGTATCTCTCGGGAAGCGTGAGTATGTCGATGTCATATCCGC
AGTTAGATTTCTGAAAACGCGTGGAGCAGAGCGTGTTGCCGTGCTTGGCA
CTTCTCAAGGAGCATCTTCGGCTATCATTGCTGCAGCCAAGTGTCGCGAC
ATAGATGCGTTGGTCCTCGAAAATCCTTTCTCTTCGCCGGAAGTTTTGGT
TCGCCACGTTGTCACGACAATCTTAAAAAAGGTTCCCCTACCATTGTTCG
ATGTGCTGATGGCGCCATTGCTTTTCCGACTATCGCTTTTCCGAACAGGA
AACTTCCCAGCTACGGAACAAAAGAAAGCTATTGATCACATGTTGCGGGT
AACGGTTCCCGTTCTCTTCATCCATGGCACTGCAGACCTTGTAGTACATC
ATAACGAATCGGAGATATTGTTCAAGACGGCTGCAACGCAACATAAACAA
TTATGGCTGGTTGATAATGCACCGCATACACAGTGCTTCAACACCAAGCC
CGATGATTTCCGAACCAGGGTAACTGAATTCTTGCGAACCCATCTCTTCA
ACAAATAA