Gvermi12300.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12300.t1
Unique NameGvermi12300.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length526
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4134290..4135867 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5762.XP_002674692.1
PFAMsWD40
Max annot lvl2759|Eukaryota
KEGG koko:K10409,ko:K10415,ko:K11143
KEGG Pathwayko04145,ko04962,ko05016,ko05132,map04145,map04962,map05016,map05132
GOsGO:0000003,GO:0000280,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005815,GO:0005816,GO:0005856,GO:0005868,GO:0005875,GO:0005938,GO:0006810,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0007049,GO:0007097,GO:0007127,GO:0008150,GO:0009987,GO:0010970,GO:0015630,GO:0016043,GO:0022402,GO:0022414,GO:0030286,GO:0030473,GO:0030705,GO:0030863,GO:0030981,GO:0030989,GO:0032781,GO:0032991,GO:0035974,GO:0043085,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043462,GO:0044093,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0045503,GO:0045504,GO:0046907,GO:0048285,GO:0050790,GO:0051179,GO:0051234,GO:0051321,GO:0051336,GO:0051345,GO:0051640,GO:0051641,GO:0051647,GO:0051649,GO:0051656,GO:0061982,GO:0065007,GO:0065009,GO:0071840,GO:0071944,GO:0072384,GO:0099111,GO:0099568,GO:0140013,GO:1902494,GO:1903046,GO:2000574,GO:2000576,GO:2000580,GO:2000582
Evalue3.09e-29
EggNOG OGsKOG1587@1|root,KOG1587@2759|Eukaryota
Descriptiondynein heavy chain binding
COG categoryS
BRITEko00000,ko00001,ko03036,ko04812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12300Gvermi12300Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4134290..4135867 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12300.t1.stop1Gvermi12300.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4134290..4134292 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12300.t1.CDS1Gvermi12300.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4134290..4135867 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12300.t1.exon1Gvermi12300.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4134290..4135867 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12300.t1.start1Gvermi12300.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4135865..4135867 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12300.t1Gvermi12300.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4134290..4135867 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12300.t1 ID=Gvermi12300.t1|Name=Gvermi12300.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=526bp
MDHHSEIEQRRKRLEQQKQNLISFQSLHNTRPHSQETRREAPPSSHDRKP
TNRSFSRAPKAELNLPPSHDISHDESKESLSGVAISNKGSYLSELMGDAK
FSSKFDLVPTEGDQQNKSKNHHYSASQHASDRSPLQFRITLKNDVTELRP
TTAIKFHRKFDDIVVTSHGSRSDKRLSSEPGLNAIWRLDEGRSTLQRTLT
ANAAISAIELPSISPTLVIGGTVSGSVLFWDTRMKTSLPVHALEGNTAFV
TGFHDREKVTAVKCTASSSPYFVSTSNGGHVCKWTLSKPDVPITRDTLRE
NATSAELNISSFDFPRSARLAGGEKTTANRFASLLIGGEDGGIYRADGND
SSWTVETALGKNHEAKVTAVSAHPFGHHVAFLDNVLLSASADWTLKLWYF
HKSHQSVCIDTFDMVEYGRVNDVAWSNQHPTVFCAGSEAGYLSLFDISNR
LLTSTNRNCWHFDMPDVSHNSEITSVQWDRVSKNVCAGSSNGTIFLWQCT
SDFASLPDAEWTGQYLKSKQNVLVQ*
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spliced messenger RNA

>Gvermi12300.t1 ID=Gvermi12300.t1|Name=Gvermi12300.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1578bp|location=Sequence derived from alignment at ScGOVlb_3404:4134290..4135867- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATCACCACTCAGAAATAGAGCAAAGGCGAAAGAGGCTTGAACAGCA
AAAGCAAAACCTCATTAGTTTTCAATCACTCCACAACACGAGGCCTCATT
CTCAAGAAACGAGGAGGGAAGCTCCTCCAAGTAGTCATGATCGAAAGCCC
ACAAATCGCAGCTTTTCGCGCGCTCCTAAGGCGGAGCTCAATCTACCGCC
GTCCCACGACATATCTCATGATGAAAGCAAGGAGTCCCTTTCTGGTGTGG
CCATCAGCAACAAAGGATCTTATCTGTCGGAACTTATGGGGGATGCCAAA
TTCTCTTCGAAGTTCGATTTAGTTCCGACAGAGGGAGATCAGCAAAACAA
GTCAAAGAACCACCATTATTCTGCATCACAACACGCCTCAGATCGATCCC
CACTACAGTTTCGAATTACCCTGAAGAATGATGTGACAGAGCTTCGACCG
ACAACGGCAATTAAGTTTCACCGAAAGTTTGATGATATAGTTGTTACATC
ACATGGCTCTCGTTCCGACAAAAGACTAAGTTCCGAACCCGGACTCAACG
CAATATGGCGTCTAGATGAAGGGCGAAGCACACTGCAGAGGACGTTGACA
GCCAACGCCGCGATATCTGCCATTGAGCTTCCAAGCATATCCCCAACATT
AGTGATTGGCGGGACTGTATCTGGAAGTGTACTCTTTTGGGACACTCGAA
TGAAAACTTCTCTTCCAGTCCATGCCCTGGAGGGCAACACAGCATTCGTT
ACAGGTTTTCACGACAGGGAGAAAGTTACTGCGGTGAAGTGCACGGCAAG
TTCCTCTCCCTATTTTGTTTCAACCAGCAACGGAGGTCACGTCTGTAAGT
GGACACTTTCGAAGCCGGATGTACCAATAACTAGGGACACTTTGCGTGAA
AATGCGACATCGGCAGAACTAAACATTTCCAGTTTCGATTTTCCCCGGTC
TGCAAGACTTGCCGGTGGTGAAAAGACGACAGCAAACAGGTTTGCGTCTC
TTCTTATTGGAGGTGAGGATGGAGGAATATATAGGGCTGACGGAAATGAT
TCCTCATGGACCGTTGAAACTGCCTTGGGGAAAAATCATGAGGCTAAGGT
AACAGCTGTTTCAGCACATCCATTTGGACACCATGTAGCATTCCTTGACA
ACGTTCTACTCTCCGCGTCGGCAGATTGGACTCTGAAGTTATGGTATTTT
CATAAATCGCATCAATCTGTGTGCATTGATACCTTCGATATGGTCGAGTA
CGGGAGGGTCAATGATGTTGCATGGAGCAACCAGCATCCGACGGTATTTT
GTGCCGGCAGTGAAGCCGGATACCTTTCACTTTTCGATATCAGCAATCGT
TTGTTAACATCTACCAATCGTAACTGTTGGCACTTTGATATGCCAGATGT
GAGCCACAACTCGGAAATAACCAGTGTTCAATGGGACCGAGTGTCCAAAA
ATGTATGCGCCGGGAGCTCAAATGGAACTATATTCCTGTGGCAATGTACT
TCTGACTTCGCCTCTTTGCCAGACGCGGAATGGACAGGGCAATATTTGAA
ATCCAAGCAAAACGTGTTGGTCCAGTGA
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protein sequence of Gvermi12300.t1

>Gvermi12300.t1 ID=Gvermi12300.t1|Name=Gvermi12300.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=526bp
MDHHSEIEQRRKRLEQQKQNLISFQSLHNTRPHSQETRREAPPSSHDRKP
TNRSFSRAPKAELNLPPSHDISHDESKESLSGVAISNKGSYLSELMGDAK
FSSKFDLVPTEGDQQNKSKNHHYSASQHASDRSPLQFRITLKNDVTELRP
TTAIKFHRKFDDIVVTSHGSRSDKRLSSEPGLNAIWRLDEGRSTLQRTLT
ANAAISAIELPSISPTLVIGGTVSGSVLFWDTRMKTSLPVHALEGNTAFV
TGFHDREKVTAVKCTASSSPYFVSTSNGGHVCKWTLSKPDVPITRDTLRE
NATSAELNISSFDFPRSARLAGGEKTTANRFASLLIGGEDGGIYRADGND
SSWTVETALGKNHEAKVTAVSAHPFGHHVAFLDNVLLSASADWTLKLWYF
HKSHQSVCIDTFDMVEYGRVNDVAWSNQHPTVFCAGSEAGYLSLFDISNR
LLTSTNRNCWHFDMPDVSHNSEITSVQWDRVSKNVCAGSSNGTIFLWQCT
SDFASLPDAEWTGQYLKSKQNVLVQ*
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mRNA from alignment at ScGOVlb_3404:4134290..4135867-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12300.t1 ID=Gvermi12300.t1|Name=Gvermi12300.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1578bp|location=Sequence derived from alignment at ScGOVlb_3404:4134290..4135867- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGATCACCACTCAGAAATAGAGCAAAGGCGAAAGAGGCTTGAACAGCA
AAAGCAAAACCTCATTAGTTTTCAATCACTCCACAACACGAGGCCTCATT
CTCAAGAAACGAGGAGGGAAGCTCCTCCAAGTAGTCATGATCGAAAGCCC
ACAAATCGCAGCTTTTCGCGCGCTCCTAAGGCGGAGCTCAATCTACCGCC
GTCCCACGACATATCTCATGATGAAAGCAAGGAGTCCCTTTCTGGTGTGG
CCATCAGCAACAAAGGATCTTATCTGTCGGAACTTATGGGGGATGCCAAA
TTCTCTTCGAAGTTCGATTTAGTTCCGACAGAGGGAGATCAGCAAAACAA
GTCAAAGAACCACCATTATTCTGCATCACAACACGCCTCAGATCGATCCC
CACTACAGTTTCGAATTACCCTGAAGAATGATGTGACAGAGCTTCGACCG
ACAACGGCAATTAAGTTTCACCGAAAGTTTGATGATATAGTTGTTACATC
ACATGGCTCTCGTTCCGACAAAAGACTAAGTTCCGAACCCGGACTCAACG
CAATATGGCGTCTAGATGAAGGGCGAAGCACACTGCAGAGGACGTTGACA
GCCAACGCCGCGATATCTGCCATTGAGCTTCCAAGCATATCCCCAACATT
AGTGATTGGCGGGACTGTATCTGGAAGTGTACTCTTTTGGGACACTCGAA
TGAAAACTTCTCTTCCAGTCCATGCCCTGGAGGGCAACACAGCATTCGTT
ACAGGTTTTCACGACAGGGAGAAAGTTACTGCGGTGAAGTGCACGGCAAG
TTCCTCTCCCTATTTTGTTTCAACCAGCAACGGAGGTCACGTCTGTAAGT
GGACACTTTCGAAGCCGGATGTACCAATAACTAGGGACACTTTGCGTGAA
AATGCGACATCGGCAGAACTAAACATTTCCAGTTTCGATTTTCCCCGGTC
TGCAAGACTTGCCGGTGGTGAAAAGACGACAGCAAACAGGTTTGCGTCTC
TTCTTATTGGAGGTGAGGATGGAGGAATATATAGGGCTGACGGAAATGAT
TCCTCATGGACCGTTGAAACTGCCTTGGGGAAAAATCATGAGGCTAAGGT
AACAGCTGTTTCAGCACATCCATTTGGACACCATGTAGCATTCCTTGACA
ACGTTCTACTCTCCGCGTCGGCAGATTGGACTCTGAAGTTATGGTATTTT
CATAAATCGCATCAATCTGTGTGCATTGATACCTTCGATATGGTCGAGTA
CGGGAGGGTCAATGATGTTGCATGGAGCAACCAGCATCCGACGGTATTTT
GTGCCGGCAGTGAAGCCGGATACCTTTCACTTTTCGATATCAGCAATCGT
TTGTTAACATCTACCAATCGTAACTGTTGGCACTTTGATATGCCAGATGT
GAGCCACAACTCGGAAATAACCAGTGTTCAATGGGACCGAGTGTCCAAAA
ATGTATGCGCCGGGAGCTCAAATGGAACTATATTCCTGTGGCAATGTACT
TCTGACTTCGCCTCTTTGCCAGACGCGGAATGGACAGGGCAATATTTGAA
ATCCAAGCAAAACGTGTTGGTCCAGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4134290..4135867-

>Gvermi12300.t1 ID=Gvermi12300.t1|Name=Gvermi12300.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1578bp|location=Sequence derived from alignment at ScGOVlb_3404:4134290..4135867- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGATCACCACTCAGAAATAGAGCAAAGGCGAAAGAGGCTTGAACAGCA
AAAGCAAAACCTCATTAGTTTTCAATCACTCCACAACACGAGGCCTCATT
CTCAAGAAACGAGGAGGGAAGCTCCTCCAAGTAGTCATGATCGAAAGCCC
ACAAATCGCAGCTTTTCGCGCGCTCCTAAGGCGGAGCTCAATCTACCGCC
GTCCCACGACATATCTCATGATGAAAGCAAGGAGTCCCTTTCTGGTGTGG
CCATCAGCAACAAAGGATCTTATCTGTCGGAACTTATGGGGGATGCCAAA
TTCTCTTCGAAGTTCGATTTAGTTCCGACAGAGGGAGATCAGCAAAACAA
GTCAAAGAACCACCATTATTCTGCATCACAACACGCCTCAGATCGATCCC
CACTACAGTTTCGAATTACCCTGAAGAATGATGTGACAGAGCTTCGACCG
ACAACGGCAATTAAGTTTCACCGAAAGTTTGATGATATAGTTGTTACATC
ACATGGCTCTCGTTCCGACAAAAGACTAAGTTCCGAACCCGGACTCAACG
CAATATGGCGTCTAGATGAAGGGCGAAGCACACTGCAGAGGACGTTGACA
GCCAACGCCGCGATATCTGCCATTGAGCTTCCAAGCATATCCCCAACATT
AGTGATTGGCGGGACTGTATCTGGAAGTGTACTCTTTTGGGACACTCGAA
TGAAAACTTCTCTTCCAGTCCATGCCCTGGAGGGCAACACAGCATTCGTT
ACAGGTTTTCACGACAGGGAGAAAGTTACTGCGGTGAAGTGCACGGCAAG
TTCCTCTCCCTATTTTGTTTCAACCAGCAACGGAGGTCACGTCTGTAAGT
GGACACTTTCGAAGCCGGATGTACCAATAACTAGGGACACTTTGCGTGAA
AATGCGACATCGGCAGAACTAAACATTTCCAGTTTCGATTTTCCCCGGTC
TGCAAGACTTGCCGGTGGTGAAAAGACGACAGCAAACAGGTTTGCGTCTC
TTCTTATTGGAGGTGAGGATGGAGGAATATATAGGGCTGACGGAAATGAT
TCCTCATGGACCGTTGAAACTGCCTTGGGGAAAAATCATGAGGCTAAGGT
AACAGCTGTTTCAGCACATCCATTTGGACACCATGTAGCATTCCTTGACA
ACGTTCTACTCTCCGCGTCGGCAGATTGGACTCTGAAGTTATGGTATTTT
CATAAATCGCATCAATCTGTGTGCATTGATACCTTCGATATGGTCGAGTA
CGGGAGGGTCAATGATGTTGCATGGAGCAACCAGCATCCGACGGTATTTT
GTGCCGGCAGTGAAGCCGGATACCTTTCACTTTTCGATATCAGCAATCGT
TTGTTAACATCTACCAATCGTAACTGTTGGCACTTTGATATGCCAGATGT
GAGCCACAACTCGGAAATAACCAGTGTTCAATGGGACCGAGTGTCCAAAA
ATGTATGCGCCGGGAGCTCAAATGGAACTATATTCCTGTGGCAATGTACT
TCTGACTTCGCCTCTTTGCCAGACGCGGAATGGACAGGGCAATATTTGAA
ATCCAAGCAAAACGTGTTGGTCCAGTGA
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