Gvermi12297.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12297.t1
Unique Name	Gvermi12297.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	724

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:4126256..4128427 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	176946.XP_007425623.1
Preferred name	PREP
PFAMs	Peptidase_S9,Peptidase_S9_N
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K01322
KEGG Pathway	ko04614,map04614
GOs	GO:0003674,GO:0003824,GO:0004175,GO:0004252,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0016787,GO:0016788,GO:0017171,GO:0019538,GO:0033218,GO:0042277,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0052689,GO:0070011,GO:0071704,GO:0140096,GO:1901564
Evalue	1.05e-216
EggNOG OGs	COG1505@1\|root,KOG2237@2759\|Eukaryota,38DGX@33154\|Opisthokonta,3BADV@33208\|Metazoa,3CXQ9@33213\|Bilateria,47ZPE@7711\|Chordata,48V8W@7742\|Vertebrata
EC	3.4.21.26
Description	prolyl endopeptidase
COG category	O
BRITE	ko00000,ko00001,ko01000,ko01002

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12297	Gvermi12297	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3404 4126256..4128427 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12297.t1.start1	Gvermi12297.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_3404 4126256..4126258 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12297.t1.CDS1	Gvermi12297.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3404 4126256..4128427 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12297.t1.exon1	Gvermi12297.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3404 4126256..4128427 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12297.t1.stop1	Gvermi12297.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_3404 4128425..4128427 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12297.t1	Gvermi12297.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3404 4126256..4128427 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3404:4126256..4128427+
coding sequence from alignment at ScGOVlb_3404:4126256..4128427+

mRNA sequence

>Gvermi12297.t1 ID=Gvermi12297.t1|Name=Gvermi12297.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=724bp
MSLVSYPVTRRDESIVDNLHGQKVADPYRWLENPDSAETAAWVEAQNKVT
SSYLSAAESARPKIQSRIERLMNYDRFSCPWKRGSYFYYHHRAGLANQAV
IMQTESIDAEPRVFLDPNTMSEDGTVSLGSMSWSHDGQYLAYGLKRGGSD
WEEIHVIDCQTLDHLPEVLEWAKFTSIAWTHDGQGFYYARYPPPASLKGV
DDKDKRGAETDQSRFQAIYFHTVGTPQNEDRLVFTDEEQPQRLYGVGTTI
DGQYLRITCHDDCSPKNQVWVVNLTVFFGNEAAGMKKIVGESYNAQFLYI
ANDEDVFYFLTNWKAPKNRIIKVKLDDVLDDCTELIPEHSHKVLSEAIVV
NYDQLVLKYMEDAHDKLSVHSLNSGQRIFDVPLPDIGSVSISGQRDQDFM
TYMFTSFLHAGIVFYVDLTIPVQDGTRVFRKMDPPGFDPSLYRTKQVFYT
SKDGTKVPMFIIGTHDLFEESSSSINPCLLYGYGGFMISLTPAYSARWAA
WLECLGGAVAIANLRGGDEYGSEWHEQGILEKKQNVFDDFQWAAKYLCND
MKITVPKRLMIMGGSNGGLLVGACVNQSPELFGAAVAQVGVHDIFRFHKF
TIGSAWVSDFGDPENPEHFEFQKKYSPLHNVFSPDDEGKPYPAILLTTGD
HDDRVVPLHTLKFGATLQHRAGQSKLQEGKPLLIRVDVKAGHGAGKPTAK
VIQELCDTLLFAALSLDVQVGLE*

spliced messenger RNA

>Gvermi12297.t1 ID=Gvermi12297.t1|Name=Gvermi12297.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2172bp|location=Sequence derived from alignment at ScGOVlb_3404:4126256..4128427+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTCTTGTATCGTACCCTGTGACTCGACGGGACGAGTCCATAGTGGA
TAATCTTCATGGCCAGAAAGTCGCTGATCCGTACCGTTGGCTTGAGAACC
CAGACAGCGCGGAAACCGCGGCATGGGTCGAGGCCCAAAACAAGGTTACT
TCATCATATCTAAGTGCGGCAGAATCAGCGCGCCCGAAGATCCAAAGCCG
AATTGAAAGGCTTATGAATTATGATAGGTTTTCATGCCCCTGGAAACGAG
GATCGTACTTTTATTATCATCATCGGGCTGGATTGGCAAATCAAGCAGTA
ATCATGCAAACTGAAAGTATTGATGCAGAACCCAGGGTATTTTTAGATCC
CAATACGATGTCTGAAGACGGGACTGTGAGTCTTGGTTCGATGTCATGGT
CTCATGATGGTCAATACCTTGCATATGGATTGAAGCGAGGAGGCAGTGAC
TGGGAAGAAATTCATGTCATCGATTGTCAAACTCTGGATCATTTGCCAGA
GGTCCTTGAATGGGCAAAGTTTACAAGCATTGCATGGACTCATGATGGAC
AGGGTTTCTATTATGCTCGATACCCCCCGCCGGCATCTCTAAAAGGCGTT
GATGATAAAGATAAGCGGGGAGCTGAGACAGATCAATCCCGTTTTCAAGC
AATATACTTTCATACAGTTGGAACCCCACAAAATGAAGATCGCCTTGTTT
TTACAGACGAAGAACAACCGCAGCGCTTGTACGGCGTTGGGACTACAATT
GACGGACAATATCTCAGAATAACATGCCACGATGATTGCTCTCCTAAGAA
TCAAGTGTGGGTTGTTAATCTAACAGTTTTCTTCGGAAATGAGGCAGCCG
GAATGAAGAAGATTGTAGGAGAATCCTATAATGCCCAGTTTTTGTATATT
GCTAACGATGAAGATGTCTTTTACTTCCTAACCAATTGGAAAGCACCAAA
AAATCGCATTATCAAGGTAAAACTTGATGATGTTCTTGATGATTGCACTG
AATTGATTCCTGAGCATTCACATAAAGTGCTCTCAGAGGCAATAGTCGTG
AACTATGATCAGCTGGTGCTCAAGTACATGGAGGATGCACATGACAAGCT
CTCTGTTCATAGCTTGAATTCTGGGCAGCGGATCTTTGACGTTCCCCTGC
CAGATATCGGATCTGTTTCGATTTCGGGTCAACGCGACCAAGACTTCATG
ACTTACATGTTTACAAGTTTTCTTCATGCAGGTATTGTTTTTTATGTTGA
CCTGACCATTCCCGTTCAGGACGGAACGCGCGTGTTTCGGAAGATGGATC
CTCCGGGATTCGATCCGTCGCTGTATAGAACAAAGCAGGTGTTCTACACA
TCAAAAGACGGAACCAAAGTACCTATGTTCATCATTGGAACTCATGATTT
GTTTGAAGAAAGTTCATCTTCTATAAACCCATGCCTATTATACGGGTACG
GAGGCTTCATGATTTCTCTGACTCCAGCATATTCAGCAAGGTGGGCCGCC
TGGCTTGAATGTCTCGGCGGTGCGGTAGCCATCGCGAACCTGCGAGGTGG
GGATGAGTACGGTTCTGAATGGCACGAGCAAGGAATCCTCGAAAAAAAAC
AGAATGTATTCGACGATTTTCAATGGGCAGCGAAGTATCTTTGCAATGAT
ATGAAAATCACTGTGCCGAAACGGTTGATGATCATGGGAGGCAGCAATGG
AGGCCTGCTCGTCGGAGCTTGCGTCAATCAATCTCCTGAACTTTTCGGAG
CTGCGGTTGCCCAAGTAGGGGTTCATGATATCTTTCGCTTCCACAAATTT
ACCATTGGGTCAGCGTGGGTCAGTGATTTTGGCGACCCCGAAAACCCAGA
ACATTTCGAGTTTCAGAAGAAGTACTCACCTCTCCACAACGTGTTTTCTC
CAGATGACGAAGGCAAACCCTACCCTGCAATCCTTCTCACTACCGGGGAT
CACGATGACAGGGTAGTTCCGCTGCATACCCTCAAATTTGGAGCAACATT
GCAGCATAGAGCTGGCCAGAGCAAACTTCAGGAGGGAAAACCCCTCCTAA
TAAGAGTAGATGTCAAAGCTGGACATGGAGCGGGGAAGCCGACTGCCAAA
GTTATTCAGGAGCTTTGTGATACTTTGCTTTTTGCAGCTCTTTCACTGGA
CGTGCAAGTAGGTCTCGAATAG

protein sequence of Gvermi12297.t1

>Gvermi12297.t1 ID=Gvermi12297.t1|Name=Gvermi12297.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=724bp
MSLVSYPVTRRDESIVDNLHGQKVADPYRWLENPDSAETAAWVEAQNKVT
SSYLSAAESARPKIQSRIERLMNYDRFSCPWKRGSYFYYHHRAGLANQAV
IMQTESIDAEPRVFLDPNTMSEDGTVSLGSMSWSHDGQYLAYGLKRGGSD
WEEIHVIDCQTLDHLPEVLEWAKFTSIAWTHDGQGFYYARYPPPASLKGV
DDKDKRGAETDQSRFQAIYFHTVGTPQNEDRLVFTDEEQPQRLYGVGTTI
DGQYLRITCHDDCSPKNQVWVVNLTVFFGNEAAGMKKIVGESYNAQFLYI
ANDEDVFYFLTNWKAPKNRIIKVKLDDVLDDCTELIPEHSHKVLSEAIVV
NYDQLVLKYMEDAHDKLSVHSLNSGQRIFDVPLPDIGSVSISGQRDQDFM
TYMFTSFLHAGIVFYVDLTIPVQDGTRVFRKMDPPGFDPSLYRTKQVFYT
SKDGTKVPMFIIGTHDLFEESSSSINPCLLYGYGGFMISLTPAYSARWAA
WLECLGGAVAIANLRGGDEYGSEWHEQGILEKKQNVFDDFQWAAKYLCND
MKITVPKRLMIMGGSNGGLLVGACVNQSPELFGAAVAQVGVHDIFRFHKF
TIGSAWVSDFGDPENPEHFEFQKKYSPLHNVFSPDDEGKPYPAILLTTGD
HDDRVVPLHTLKFGATLQHRAGQSKLQEGKPLLIRVDVKAGHGAGKPTAK
VIQELCDTLLFAALSLDVQVGLE*

mRNA from alignment at ScGOVlb_3404:4126256..4128427+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12297.t1 ID=Gvermi12297.t1|Name=Gvermi12297.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2172bp|location=Sequence derived from alignment at ScGOVlb_3404:4126256..4128427+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGTCTTGTATCGTACCCTGTGACTCGACGGGACGAGTCCATAGTGGA
TAATCTTCATGGCCAGAAAGTCGCTGATCCGTACCGTTGGCTTGAGAACC
CAGACAGCGCGGAAACCGCGGCATGGGTCGAGGCCCAAAACAAGGTTACT
TCATCATATCTAAGTGCGGCAGAATCAGCGCGCCCGAAGATCCAAAGCCG
AATTGAAAGGCTTATGAATTATGATAGGTTTTCATGCCCCTGGAAACGAG
GATCGTACTTTTATTATCATCATCGGGCTGGATTGGCAAATCAAGCAGTA
ATCATGCAAACTGAAAGTATTGATGCAGAACCCAGGGTATTTTTAGATCC
CAATACGATGTCTGAAGACGGGACTGTGAGTCTTGGTTCGATGTCATGGT
CTCATGATGGTCAATACCTTGCATATGGATTGAAGCGAGGAGGCAGTGAC
TGGGAAGAAATTCATGTCATCGATTGTCAAACTCTGGATCATTTGCCAGA
GGTCCTTGAATGGGCAAAGTTTACAAGCATTGCATGGACTCATGATGGAC
AGGGTTTCTATTATGCTCGATACCCCCCGCCGGCATCTCTAAAAGGCGTT
GATGATAAAGATAAGCGGGGAGCTGAGACAGATCAATCCCGTTTTCAAGC
AATATACTTTCATACAGTTGGAACCCCACAAAATGAAGATCGCCTTGTTT
TTACAGACGAAGAACAACCGCAGCGCTTGTACGGCGTTGGGACTACAATT
GACGGACAATATCTCAGAATAACATGCCACGATGATTGCTCTCCTAAGAA
TCAAGTGTGGGTTGTTAATCTAACAGTTTTCTTCGGAAATGAGGCAGCCG
GAATGAAGAAGATTGTAGGAGAATCCTATAATGCCCAGTTTTTGTATATT
GCTAACGATGAAGATGTCTTTTACTTCCTAACCAATTGGAAAGCACCAAA
AAATCGCATTATCAAGGTAAAACTTGATGATGTTCTTGATGATTGCACTG
AATTGATTCCTGAGCATTCACATAAAGTGCTCTCAGAGGCAATAGTCGTG
AACTATGATCAGCTGGTGCTCAAGTACATGGAGGATGCACATGACAAGCT
CTCTGTTCATAGCTTGAATTCTGGGCAGCGGATCTTTGACGTTCCCCTGC
CAGATATCGGATCTGTTTCGATTTCGGGTCAACGCGACCAAGACTTCATG
ACTTACATGTTTACAAGTTTTCTTCATGCAGGTATTGTTTTTTATGTTGA
CCTGACCATTCCCGTTCAGGACGGAACGCGCGTGTTTCGGAAGATGGATC
CTCCGGGATTCGATCCGTCGCTGTATAGAACAAAGCAGGTGTTCTACACA
TCAAAAGACGGAACCAAAGTACCTATGTTCATCATTGGAACTCATGATTT
GTTTGAAGAAAGTTCATCTTCTATAAACCCATGCCTATTATACGGGTACG
GAGGCTTCATGATTTCTCTGACTCCAGCATATTCAGCAAGGTGGGCCGCC
TGGCTTGAATGTCTCGGCGGTGCGGTAGCCATCGCGAACCTGCGAGGTGG
GGATGAGTACGGTTCTGAATGGCACGAGCAAGGAATCCTCGAAAAAAAAC
AGAATGTATTCGACGATTTTCAATGGGCAGCGAAGTATCTTTGCAATGAT
ATGAAAATCACTGTGCCGAAACGGTTGATGATCATGGGAGGCAGCAATGG
AGGCCTGCTCGTCGGAGCTTGCGTCAATCAATCTCCTGAACTTTTCGGAG
CTGCGGTTGCCCAAGTAGGGGTTCATGATATCTTTCGCTTCCACAAATTT
ACCATTGGGTCAGCGTGGGTCAGTGATTTTGGCGACCCCGAAAACCCAGA
ACATTTCGAGTTTCAGAAGAAGTACTCACCTCTCCACAACGTGTTTTCTC
CAGATGACGAAGGCAAACCCTACCCTGCAATCCTTCTCACTACCGGGGAT
CACGATGACAGGGTAGTTCCGCTGCATACCCTCAAATTTGGAGCAACATT
GCAGCATAGAGCTGGCCAGAGCAAACTTCAGGAGGGAAAACCCCTCCTAA
TAAGAGTAGATGTCAAAGCTGGACATGGAGCGGGGAAGCCGACTGCCAAA
GTTATTCAGGAGCTTTGTGATACTTTGCTTTTTGCAGCTCTTTCACTGGA
CGTGCAAGTAGGTCTCGAATAG

Coding sequence (CDS) from alignment at ScGOVlb_3404:4126256..4128427+

>Gvermi12297.t1 ID=Gvermi12297.t1|Name=Gvermi12297.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2172bp|location=Sequence derived from alignment at ScGOVlb_3404:4126256..4128427+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGTCTTGTATCGTACCCTGTGACTCGACGGGACGAGTCCATAGTGGA
TAATCTTCATGGCCAGAAAGTCGCTGATCCGTACCGTTGGCTTGAGAACC
CAGACAGCGCGGAAACCGCGGCATGGGTCGAGGCCCAAAACAAGGTTACT
TCATCATATCTAAGTGCGGCAGAATCAGCGCGCCCGAAGATCCAAAGCCG
AATTGAAAGGCTTATGAATTATGATAGGTTTTCATGCCCCTGGAAACGAG
GATCGTACTTTTATTATCATCATCGGGCTGGATTGGCAAATCAAGCAGTA
ATCATGCAAACTGAAAGTATTGATGCAGAACCCAGGGTATTTTTAGATCC
CAATACGATGTCTGAAGACGGGACTGTGAGTCTTGGTTCGATGTCATGGT
CTCATGATGGTCAATACCTTGCATATGGATTGAAGCGAGGAGGCAGTGAC
TGGGAAGAAATTCATGTCATCGATTGTCAAACTCTGGATCATTTGCCAGA
GGTCCTTGAATGGGCAAAGTTTACAAGCATTGCATGGACTCATGATGGAC
AGGGTTTCTATTATGCTCGATACCCCCCGCCGGCATCTCTAAAAGGCGTT
GATGATAAAGATAAGCGGGGAGCTGAGACAGATCAATCCCGTTTTCAAGC
AATATACTTTCATACAGTTGGAACCCCACAAAATGAAGATCGCCTTGTTT
TTACAGACGAAGAACAACCGCAGCGCTTGTACGGCGTTGGGACTACAATT
GACGGACAATATCTCAGAATAACATGCCACGATGATTGCTCTCCTAAGAA
TCAAGTGTGGGTTGTTAATCTAACAGTTTTCTTCGGAAATGAGGCAGCCG
GAATGAAGAAGATTGTAGGAGAATCCTATAATGCCCAGTTTTTGTATATT
GCTAACGATGAAGATGTCTTTTACTTCCTAACCAATTGGAAAGCACCAAA
AAATCGCATTATCAAGGTAAAACTTGATGATGTTCTTGATGATTGCACTG
AATTGATTCCTGAGCATTCACATAAAGTGCTCTCAGAGGCAATAGTCGTG
AACTATGATCAGCTGGTGCTCAAGTACATGGAGGATGCACATGACAAGCT
CTCTGTTCATAGCTTGAATTCTGGGCAGCGGATCTTTGACGTTCCCCTGC
CAGATATCGGATCTGTTTCGATTTCGGGTCAACGCGACCAAGACTTCATG
ACTTACATGTTTACAAGTTTTCTTCATGCAGGTATTGTTTTTTATGTTGA
CCTGACCATTCCCGTTCAGGACGGAACGCGCGTGTTTCGGAAGATGGATC
CTCCGGGATTCGATCCGTCGCTGTATAGAACAAAGCAGGTGTTCTACACA
TCAAAAGACGGAACCAAAGTACCTATGTTCATCATTGGAACTCATGATTT
GTTTGAAGAAAGTTCATCTTCTATAAACCCATGCCTATTATACGGGTACG
GAGGCTTCATGATTTCTCTGACTCCAGCATATTCAGCAAGGTGGGCCGCC
TGGCTTGAATGTCTCGGCGGTGCGGTAGCCATCGCGAACCTGCGAGGTGG
GGATGAGTACGGTTCTGAATGGCACGAGCAAGGAATCCTCGAAAAAAAAC
AGAATGTATTCGACGATTTTCAATGGGCAGCGAAGTATCTTTGCAATGAT
ATGAAAATCACTGTGCCGAAACGGTTGATGATCATGGGAGGCAGCAATGG
AGGCCTGCTCGTCGGAGCTTGCGTCAATCAATCTCCTGAACTTTTCGGAG
CTGCGGTTGCCCAAGTAGGGGTTCATGATATCTTTCGCTTCCACAAATTT
ACCATTGGGTCAGCGTGGGTCAGTGATTTTGGCGACCCCGAAAACCCAGA
ACATTTCGAGTTTCAGAAGAAGTACTCACCTCTCCACAACGTGTTTTCTC
CAGATGACGAAGGCAAACCCTACCCTGCAATCCTTCTCACTACCGGGGAT
CACGATGACAGGGTAGTTCCGCTGCATACCCTCAAATTTGGAGCAACATT
GCAGCATAGAGCTGGCCAGAGCAAACTTCAGGAGGGAAAACCCCTCCTAA
TAAGAGTAGATGTCAAAGCTGGACATGGAGCGGGGAAGCCGACTGCCAAA
GTTATTCAGGAGCTTTGTGATACTTTGCTTTTTGCAGCTCTTTCACTGGA
CGTGCAAGTAGGTCTCGAATAG