Gvermi12296.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12296.t1
Unique NameGvermi12296.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length176
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4125176..4125703 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703458.1
Preferred nameSNU23
PFAMszf-C2H2_jaz,zf-met
Max annot lvl2759|Eukaryota
KEGG koko:K12848
KEGG Pathwayko03040,map03040
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0030532,GO:0032991,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0046540,GO:0071704,GO:0090304,GO:0097159,GO:0097525,GO:0097526,GO:0120114,GO:1901360,GO:1901363,GO:1990904
Evalue2.6e-24
EggNOG OGsKOG4727@1|root,KOG4727@2759|Eukaryota
DescriptionmRNA splicing, via spliceosome
COG categoryA
BRITEko00000,ko00001,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12296Gvermi12296Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4125176..4125703 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12296.t1.stop1Gvermi12296.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4125176..4125178 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12296.t1.CDS1Gvermi12296.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4125176..4125703 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12296.t1.exon1Gvermi12296.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4125176..4125703 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12296.t1.start1Gvermi12296.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4125701..4125703 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12296.t1Gvermi12296.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4125176..4125703 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12296.t1 ID=Gvermi12296.t1|Name=Gvermi12296.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=176bp
MNSQSHDVSRKSWDVAAFEKRAQERQRAEKEAENEKLRARKAARNATPVD
EDPFAPTRAWLTKREHDIDLEAKVGTVEVVASVKRSGFYCKLCDTAMKDS
NRYLQHVNSRFHQKALGMSMRVRRSTVEDIQKAFEDEVRKRDAQRKEKEN
GPLTLKERIKARKMQEKNKKSDSKH*
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spliced messenger RNA

>Gvermi12296.t1 ID=Gvermi12296.t1|Name=Gvermi12296.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=528bp|location=Sequence derived from alignment at ScGOVlb_3404:4125176..4125703- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATTCTCAGTCCCATGACGTGTCAAGGAAAAGTTGGGACGTCGCTGC
CTTTGAAAAAAGGGCTCAAGAACGACAACGTGCTGAAAAGGAAGCAGAAA
ACGAGAAACTGCGCGCTCGCAAAGCCGCACGGAACGCAACTCCTGTTGAT
GAAGACCCTTTTGCGCCCACCCGCGCGTGGCTTACCAAAAGGGAACACGA
TATTGATTTGGAAGCCAAAGTCGGCACCGTTGAGGTAGTCGCCTCAGTCA
AGCGAAGTGGCTTCTATTGTAAACTCTGTGACACAGCTATGAAAGATTCC
AATAGATACTTGCAACATGTGAACAGCCGTTTCCATCAAAAAGCTCTAGG
AATGTCCATGAGGGTGCGAAGATCCACCGTTGAAGACATCCAGAAAGCCT
TCGAGGACGAAGTTCGAAAACGGGACGCTCAAAGGAAGGAGAAAGAGAAT
GGTCCTTTAACATTGAAGGAACGTATCAAGGCACGAAAAATGCAAGAAAA
GAATAAGAAGTCTGATAGCAAGCATTAA
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protein sequence of Gvermi12296.t1

>Gvermi12296.t1 ID=Gvermi12296.t1|Name=Gvermi12296.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=176bp
MNSQSHDVSRKSWDVAAFEKRAQERQRAEKEAENEKLRARKAARNATPVD
EDPFAPTRAWLTKREHDIDLEAKVGTVEVVASVKRSGFYCKLCDTAMKDS
NRYLQHVNSRFHQKALGMSMRVRRSTVEDIQKAFEDEVRKRDAQRKEKEN
GPLTLKERIKARKMQEKNKKSDSKH*
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mRNA from alignment at ScGOVlb_3404:4125176..4125703-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12296.t1 ID=Gvermi12296.t1|Name=Gvermi12296.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=528bp|location=Sequence derived from alignment at ScGOVlb_3404:4125176..4125703- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAATTCTCAGTCCCATGACGTGTCAAGGAAAAGTTGGGACGTCGCTGC
CTTTGAAAAAAGGGCTCAAGAACGACAACGTGCTGAAAAGGAAGCAGAAA
ACGAGAAACTGCGCGCTCGCAAAGCCGCACGGAACGCAACTCCTGTTGAT
GAAGACCCTTTTGCGCCCACCCGCGCGTGGCTTACCAAAAGGGAACACGA
TATTGATTTGGAAGCCAAAGTCGGCACCGTTGAGGTAGTCGCCTCAGTCA
AGCGAAGTGGCTTCTATTGTAAACTCTGTGACACAGCTATGAAAGATTCC
AATAGATACTTGCAACATGTGAACAGCCGTTTCCATCAAAAAGCTCTAGG
AATGTCCATGAGGGTGCGAAGATCCACCGTTGAAGACATCCAGAAAGCCT
TCGAGGACGAAGTTCGAAAACGGGACGCTCAAAGGAAGGAGAAAGAGAAT
GGTCCTTTAACATTGAAGGAACGTATCAAGGCACGAAAAATGCAAGAAAA
GAATAAGAAGTCTGATAGCAAGCATTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4125176..4125703-

>Gvermi12296.t1 ID=Gvermi12296.t1|Name=Gvermi12296.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=528bp|location=Sequence derived from alignment at ScGOVlb_3404:4125176..4125703- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAATTCTCAGTCCCATGACGTGTCAAGGAAAAGTTGGGACGTCGCTGC
CTTTGAAAAAAGGGCTCAAGAACGACAACGTGCTGAAAAGGAAGCAGAAA
ACGAGAAACTGCGCGCTCGCAAAGCCGCACGGAACGCAACTCCTGTTGAT
GAAGACCCTTTTGCGCCCACCCGCGCGTGGCTTACCAAAAGGGAACACGA
TATTGATTTGGAAGCCAAAGTCGGCACCGTTGAGGTAGTCGCCTCAGTCA
AGCGAAGTGGCTTCTATTGTAAACTCTGTGACACAGCTATGAAAGATTCC
AATAGATACTTGCAACATGTGAACAGCCGTTTCCATCAAAAAGCTCTAGG
AATGTCCATGAGGGTGCGAAGATCCACCGTTGAAGACATCCAGAAAGCCT
TCGAGGACGAAGTTCGAAAACGGGACGCTCAAAGGAAGGAGAAAGAGAAT
GGTCCTTTAACATTGAAGGAACGTATCAAGGCACGAAAAATGCAAGAAAA
GAATAAGAAGTCTGATAGCAAGCATTAA
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