Gvermi12293.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12293.t1
Unique NameGvermi12293.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length421
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4118463..4119725 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12293Gvermi12293Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4118463..4119725 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12293.t1.start1Gvermi12293.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4118463..4118465 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12293.t1.CDS1Gvermi12293.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4118463..4119725 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12293.t1.exon1Gvermi12293.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4118463..4119725 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12293.t1.stop1Gvermi12293.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4119723..4119725 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12293.t1Gvermi12293.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4118463..4119725 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12293.t1 ID=Gvermi12293.t1|Name=Gvermi12293.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=421bp
MSTASLPTKYWQGTALSASDRRRQWLVNHGLLSPKPSASRRLPNLFTKRT
SSSSASTPSLHDSFVHLHVDQNAVPIVVAHRQNHPAHTSDAAARTLSLPI
EDSAHMPMTRFKRAPSSKWFSRNSTHTRYSSRSSRIRAWLGSHKHRHHPS
NSHTSNQRPQSLPFLRRSASLTSSELDIDRVNQPPDRQVVSNRPTSSTLP
SSLSPTCATHTNFTKSATNPRSRRRTVYKVVDQHIPRRVLKPQAHYEKSS
WNAYRSRIDQLAEDEQFMDYLTAPVQRHPSVNIATQTAAANAQQLAVNKL
YPLAFIKLLEAQAKMAEADSPGDPSEEKHRYDDIDGDDEARIERTSSTGL
RDMKRFRTISSENRRSRFHSPPNMSGSLEHVRLLKFCSESGSESSHSSFF
SRLTQENHASSPAVRFSRQC*
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spliced messenger RNA

>Gvermi12293.t1 ID=Gvermi12293.t1|Name=Gvermi12293.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1263bp|location=Sequence derived from alignment at ScGOVlb_3404:4118463..4119725+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTACCGCCTCACTCCCCACCAAGTATTGGCAAGGGACCGCCCTCTC
TGCCAGTGACCGTCGTCGCCAGTGGCTAGTGAACCATGGTTTGCTATCTC
CCAAGCCGTCTGCATCCCGTCGCCTTCCCAACCTTTTTACCAAACGCACC
TCCTCGTCATCAGCATCGACTCCTTCCCTGCACGACTCCTTTGTCCACCT
TCACGTCGACCAGAACGCTGTTCCAATCGTTGTCGCCCATCGCCAAAACC
ACCCCGCTCACACCAGTGATGCAGCCGCCCGCACTTTGTCGTTGCCCATT
GAAGATTCGGCTCACATGCCAATGACGCGCTTCAAAAGGGCCCCCTCTTC
CAAGTGGTTTTCCAGGAATTCCACCCATACCCGTTACTCTTCTCGCTCAA
GTCGTATTCGTGCTTGGCTTGGCTCTCACAAGCACCGACACCATCCCTCC
AATTCTCACACCTCCAATCAGCGCCCTCAAAGCCTTCCATTCCTTCGTCG
TTCCGCCAGTCTCACCTCTTCTGAACTCGATATCGACCGTGTCAACCAGC
CCCCGGACAGACAAGTCGTTAGCAACCGCCCAACCTCATCTACTCTACCG
TCATCCCTCAGCCCAACATGTGCCACGCACACCAACTTCACCAAATCCGC
TACAAATCCTCGCTCGCGGAGGCGCACTGTGTACAAAGTAGTCGATCAGC
ATATCCCTCGCCGCGTGCTCAAGCCGCAAGCACATTACGAAAAGTCTTCT
TGGAACGCTTATCGCTCTCGTATCGATCAGCTCGCAGAGGATGAGCAGTT
TATGGACTACCTCACTGCCCCCGTGCAGCGCCACCCTTCGGTCAATATCG
CAACCCAGACCGCAGCCGCCAACGCGCAACAGCTTGCTGTCAACAAGCTC
TACCCTCTGGCTTTTATCAAGCTTCTCGAAGCGCAAGCAAAGATGGCCGA
AGCAGATTCACCTGGCGACCCCTCGGAAGAGAAACATCGCTACGATGATA
TCGACGGAGATGACGAGGCACGCATCGAGAGGACTTCTTCCACAGGCTTG
CGTGACATGAAAAGGTTCAGGACCATCTCGTCAGAGAACAGGAGGAGCCG
TTTCCACTCCCCGCCCAACATGTCAGGCTCGCTGGAACACGTGCGCTTGC
TCAAATTTTGCTCGGAGAGTGGCAGCGAGTCCTCCCATTCTAGTTTTTTC
TCGAGGCTAACGCAGGAGAATCATGCCTCATCACCTGCAGTACGCTTTTC
GAGGCAATGTTAG
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protein sequence of Gvermi12293.t1

>Gvermi12293.t1 ID=Gvermi12293.t1|Name=Gvermi12293.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=421bp
MSTASLPTKYWQGTALSASDRRRQWLVNHGLLSPKPSASRRLPNLFTKRT
SSSSASTPSLHDSFVHLHVDQNAVPIVVAHRQNHPAHTSDAAARTLSLPI
EDSAHMPMTRFKRAPSSKWFSRNSTHTRYSSRSSRIRAWLGSHKHRHHPS
NSHTSNQRPQSLPFLRRSASLTSSELDIDRVNQPPDRQVVSNRPTSSTLP
SSLSPTCATHTNFTKSATNPRSRRRTVYKVVDQHIPRRVLKPQAHYEKSS
WNAYRSRIDQLAEDEQFMDYLTAPVQRHPSVNIATQTAAANAQQLAVNKL
YPLAFIKLLEAQAKMAEADSPGDPSEEKHRYDDIDGDDEARIERTSSTGL
RDMKRFRTISSENRRSRFHSPPNMSGSLEHVRLLKFCSESGSESSHSSFF
SRLTQENHASSPAVRFSRQC*
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mRNA from alignment at ScGOVlb_3404:4118463..4119725+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12293.t1 ID=Gvermi12293.t1|Name=Gvermi12293.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1263bp|location=Sequence derived from alignment at ScGOVlb_3404:4118463..4119725+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTACCGCCTCACTCCCCACCAAGTATTGGCAAGGGACCGCCCTCTC
TGCCAGTGACCGTCGTCGCCAGTGGCTAGTGAACCATGGTTTGCTATCTC
CCAAGCCGTCTGCATCCCGTCGCCTTCCCAACCTTTTTACCAAACGCACC
TCCTCGTCATCAGCATCGACTCCTTCCCTGCACGACTCCTTTGTCCACCT
TCACGTCGACCAGAACGCTGTTCCAATCGTTGTCGCCCATCGCCAAAACC
ACCCCGCTCACACCAGTGATGCAGCCGCCCGCACTTTGTCGTTGCCCATT
GAAGATTCGGCTCACATGCCAATGACGCGCTTCAAAAGGGCCCCCTCTTC
CAAGTGGTTTTCCAGGAATTCCACCCATACCCGTTACTCTTCTCGCTCAA
GTCGTATTCGTGCTTGGCTTGGCTCTCACAAGCACCGACACCATCCCTCC
AATTCTCACACCTCCAATCAGCGCCCTCAAAGCCTTCCATTCCTTCGTCG
TTCCGCCAGTCTCACCTCTTCTGAACTCGATATCGACCGTGTCAACCAGC
CCCCGGACAGACAAGTCGTTAGCAACCGCCCAACCTCATCTACTCTACCG
TCATCCCTCAGCCCAACATGTGCCACGCACACCAACTTCACCAAATCCGC
TACAAATCCTCGCTCGCGGAGGCGCACTGTGTACAAAGTAGTCGATCAGC
ATATCCCTCGCCGCGTGCTCAAGCCGCAAGCACATTACGAAAAGTCTTCT
TGGAACGCTTATCGCTCTCGTATCGATCAGCTCGCAGAGGATGAGCAGTT
TATGGACTACCTCACTGCCCCCGTGCAGCGCCACCCTTCGGTCAATATCG
CAACCCAGACCGCAGCCGCCAACGCGCAACAGCTTGCTGTCAACAAGCTC
TACCCTCTGGCTTTTATCAAGCTTCTCGAAGCGCAAGCAAAGATGGCCGA
AGCAGATTCACCTGGCGACCCCTCGGAAGAGAAACATCGCTACGATGATA
TCGACGGAGATGACGAGGCACGCATCGAGAGGACTTCTTCCACAGGCTTG
CGTGACATGAAAAGGTTCAGGACCATCTCGTCAGAGAACAGGAGGAGCCG
TTTCCACTCCCCGCCCAACATGTCAGGCTCGCTGGAACACGTGCGCTTGC
TCAAATTTTGCTCGGAGAGTGGCAGCGAGTCCTCCCATTCTAGTTTTTTC
TCGAGGCTAACGCAGGAGAATCATGCCTCATCACCTGCAGTACGCTTTTC
GAGGCAATGTTAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4118463..4119725+

>Gvermi12293.t1 ID=Gvermi12293.t1|Name=Gvermi12293.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1263bp|location=Sequence derived from alignment at ScGOVlb_3404:4118463..4119725+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTACCGCCTCACTCCCCACCAAGTATTGGCAAGGGACCGCCCTCTC
TGCCAGTGACCGTCGTCGCCAGTGGCTAGTGAACCATGGTTTGCTATCTC
CCAAGCCGTCTGCATCCCGTCGCCTTCCCAACCTTTTTACCAAACGCACC
TCCTCGTCATCAGCATCGACTCCTTCCCTGCACGACTCCTTTGTCCACCT
TCACGTCGACCAGAACGCTGTTCCAATCGTTGTCGCCCATCGCCAAAACC
ACCCCGCTCACACCAGTGATGCAGCCGCCCGCACTTTGTCGTTGCCCATT
GAAGATTCGGCTCACATGCCAATGACGCGCTTCAAAAGGGCCCCCTCTTC
CAAGTGGTTTTCCAGGAATTCCACCCATACCCGTTACTCTTCTCGCTCAA
GTCGTATTCGTGCTTGGCTTGGCTCTCACAAGCACCGACACCATCCCTCC
AATTCTCACACCTCCAATCAGCGCCCTCAAAGCCTTCCATTCCTTCGTCG
TTCCGCCAGTCTCACCTCTTCTGAACTCGATATCGACCGTGTCAACCAGC
CCCCGGACAGACAAGTCGTTAGCAACCGCCCAACCTCATCTACTCTACCG
TCATCCCTCAGCCCAACATGTGCCACGCACACCAACTTCACCAAATCCGC
TACAAATCCTCGCTCGCGGAGGCGCACTGTGTACAAAGTAGTCGATCAGC
ATATCCCTCGCCGCGTGCTCAAGCCGCAAGCACATTACGAAAAGTCTTCT
TGGAACGCTTATCGCTCTCGTATCGATCAGCTCGCAGAGGATGAGCAGTT
TATGGACTACCTCACTGCCCCCGTGCAGCGCCACCCTTCGGTCAATATCG
CAACCCAGACCGCAGCCGCCAACGCGCAACAGCTTGCTGTCAACAAGCTC
TACCCTCTGGCTTTTATCAAGCTTCTCGAAGCGCAAGCAAAGATGGCCGA
AGCAGATTCACCTGGCGACCCCTCGGAAGAGAAACATCGCTACGATGATA
TCGACGGAGATGACGAGGCACGCATCGAGAGGACTTCTTCCACAGGCTTG
CGTGACATGAAAAGGTTCAGGACCATCTCGTCAGAGAACAGGAGGAGCCG
TTTCCACTCCCCGCCCAACATGTCAGGCTCGCTGGAACACGTGCGCTTGC
TCAAATTTTGCTCGGAGAGTGGCAGCGAGTCCTCCCATTCTAGTTTTTTC
TCGAGGCTAACGCAGGAGAATCATGCCTCATCACCTGCAGTACGCTTTTC
GAGGCAATGTTAG
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