Gvermi12290.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12290.t1
Unique Name	Gvermi12290.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	396

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:4105530..4106717 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	9646.ENSAMEP00000002759
Preferred name	RCL1
PFAMs	RTC,RTC_insert
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K11108
KEGG Pathway	ko03008,map03008
GOs	GO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000478,GO:0000479,GO:0000480,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016787,GO:0016788,GO:0022613,GO:0030490,GO:0031974,GO:0031981,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360
Evalue	1.57e-91
EggNOG OGs	COG0430@1\|root,KOG3980@2759\|Eukaryota,38EIW@33154\|Opisthokonta,3BBGZ@33208\|Metazoa,3CRCU@33213\|Bilateria,480IW@7711\|Chordata,48Y0X@7742\|Vertebrata,3J8ET@40674\|Mammalia,3ETUC@33554\|Carnivora
Description	RNA terminal phosphate
COG category	A
BRITE	ko00000,ko00001,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12290	Gvermi12290	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3404 4105530..4106717 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12290.t1.start1	Gvermi12290.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_3404 4105530..4105532 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12290.t1.CDS1	Gvermi12290.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3404 4105530..4106717 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12290.t1.exon1	Gvermi12290.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3404 4105530..4106717 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12290.t1.stop1	Gvermi12290.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_3404 4106715..4106717 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12290.t1	Gvermi12290.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3404 4105530..4106717 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3404:4105530..4106717+
coding sequence from alignment at ScGOVlb_3404:4105530..4106717+

mRNA sequence

>Gvermi12290.t1 ID=Gvermi12290.t1|Name=Gvermi12290.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=396bp
MVAIKGKALTFTGGHFLRYRLVLATLSSRPVIINSIREDDAQFPGLSQSE
ICFIRLLDKVTSGTLIKINATGTTISYTPGILIGGNRIVHDCHVSRSISY
YLEPLLMLAPFAKRSIDITLRGVTHTTTDVCIDTTATVSVPLLRRLTIGT
PLQPQLQVRRRSISSGETNGNCNGGLVQFRCDTLNSKIKPIELIEAGFVK
RIRGIAFANRASPGHISRMVDVVRRIFNRFTPDVYIHTDHNNREACGIGF
GLHLVAETTEGCLVGADWSNSSAQTTPEQVAENACRMLLEEVNNGGCVDS
NHSCLALLFCALADSDLNRVRIGRLSDAAIQFMRDLRSFFGVQFKIRVFG
NAVADEANSENSEDSDDEELKNTKEEGVLLSCIGIGLSNVARQRF*

spliced messenger RNA

>Gvermi12290.t1 ID=Gvermi12290.t1|Name=Gvermi12290.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1188bp|location=Sequence derived from alignment at ScGOVlb_3404:4105530..4106717+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCGCCATAAAAGGAAAAGCCCTCACATTTACTGGTGGCCATTTTCT
TCGCTACCGACTGGTGCTCGCCACGCTTTCATCAAGACCAGTGATAATAA
ACTCTATACGAGAAGATGATGCACAGTTTCCGGGCCTTTCACAGTCAGAG
ATATGTTTCATTCGGCTTTTGGACAAAGTTACCAGCGGAACTCTCATAAA
AATCAACGCGACAGGAACAACTATATCGTACACTCCAGGAATTCTAATCG
GTGGAAATCGCATTGTTCATGATTGTCATGTTTCACGTTCGATTTCCTAT
TATCTTGAACCGCTTTTGATGCTCGCTCCCTTTGCGAAGCGTTCTATAGA
TATCACCCTTAGAGGCGTGACCCACACGACTACTGATGTTTGTATTGACA
CAACTGCTACTGTTTCCGTTCCACTCTTACGCCGCCTTACCATAGGCACA
CCTCTGCAACCGCAACTGCAAGTTAGGAGACGCTCAATATCAAGTGGCGA
AACAAATGGCAACTGCAATGGCGGGCTTGTTCAGTTTCGATGCGACACTC
TAAACTCAAAGATAAAACCAATAGAACTCATAGAGGCAGGCTTCGTGAAG
AGGATCAGAGGCATCGCATTTGCAAACCGGGCTTCACCGGGACACATTTC
GCGCATGGTAGATGTCGTTCGACGCATATTCAATCGATTTACGCCCGATG
TTTATATACATACGGATCATAACAACCGGGAAGCCTGTGGAATTGGGTTT
GGACTTCATCTTGTTGCCGAAACCACTGAAGGCTGTCTCGTAGGGGCAGA
TTGGTCAAACTCCAGTGCACAGACGACTCCCGAGCAAGTGGCGGAAAACG
CATGTCGCATGCTCTTGGAAGAAGTCAACAATGGTGGTTGTGTTGATTCT
AACCATAGTTGTCTGGCGCTTCTGTTCTGCGCTCTGGCAGATTCTGATTT
AAACCGGGTTCGAATCGGTCGATTAAGCGACGCCGCCATTCAGTTTATGC
GAGATCTGCGCTCCTTCTTTGGTGTGCAGTTTAAGATTCGCGTCTTTGGT
AATGCTGTAGCCGATGAAGCAAACTCCGAGAACTCAGAGGATTCAGATGA
TGAAGAACTCAAGAACACAAAAGAAGAAGGCGTCCTTCTTTCGTGCATTG
GCATCGGTTTATCAAATGTCGCTCGTCAACGCTTTTAA

protein sequence of Gvermi12290.t1

>Gvermi12290.t1 ID=Gvermi12290.t1|Name=Gvermi12290.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=396bp
MVAIKGKALTFTGGHFLRYRLVLATLSSRPVIINSIREDDAQFPGLSQSE
ICFIRLLDKVTSGTLIKINATGTTISYTPGILIGGNRIVHDCHVSRSISY
YLEPLLMLAPFAKRSIDITLRGVTHTTTDVCIDTTATVSVPLLRRLTIGT
PLQPQLQVRRRSISSGETNGNCNGGLVQFRCDTLNSKIKPIELIEAGFVK
RIRGIAFANRASPGHISRMVDVVRRIFNRFTPDVYIHTDHNNREACGIGF
GLHLVAETTEGCLVGADWSNSSAQTTPEQVAENACRMLLEEVNNGGCVDS
NHSCLALLFCALADSDLNRVRIGRLSDAAIQFMRDLRSFFGVQFKIRVFG
NAVADEANSENSEDSDDEELKNTKEEGVLLSCIGIGLSNVARQRF*

mRNA from alignment at ScGOVlb_3404:4105530..4106717+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12290.t1 ID=Gvermi12290.t1|Name=Gvermi12290.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1188bp|location=Sequence derived from alignment at ScGOVlb_3404:4105530..4106717+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTCGCCATAAAAGGAAAAGCCCTCACATTTACTGGTGGCCATTTTCT
TCGCTACCGACTGGTGCTCGCCACGCTTTCATCAAGACCAGTGATAATAA
ACTCTATACGAGAAGATGATGCACAGTTTCCGGGCCTTTCACAGTCAGAG
ATATGTTTCATTCGGCTTTTGGACAAAGTTACCAGCGGAACTCTCATAAA
AATCAACGCGACAGGAACAACTATATCGTACACTCCAGGAATTCTAATCG
GTGGAAATCGCATTGTTCATGATTGTCATGTTTCACGTTCGATTTCCTAT
TATCTTGAACCGCTTTTGATGCTCGCTCCCTTTGCGAAGCGTTCTATAGA
TATCACCCTTAGAGGCGTGACCCACACGACTACTGATGTTTGTATTGACA
CAACTGCTACTGTTTCCGTTCCACTCTTACGCCGCCTTACCATAGGCACA
CCTCTGCAACCGCAACTGCAAGTTAGGAGACGCTCAATATCAAGTGGCGA
AACAAATGGCAACTGCAATGGCGGGCTTGTTCAGTTTCGATGCGACACTC
TAAACTCAAAGATAAAACCAATAGAACTCATAGAGGCAGGCTTCGTGAAG
AGGATCAGAGGCATCGCATTTGCAAACCGGGCTTCACCGGGACACATTTC
GCGCATGGTAGATGTCGTTCGACGCATATTCAATCGATTTACGCCCGATG
TTTATATACATACGGATCATAACAACCGGGAAGCCTGTGGAATTGGGTTT
GGACTTCATCTTGTTGCCGAAACCACTGAAGGCTGTCTCGTAGGGGCAGA
TTGGTCAAACTCCAGTGCACAGACGACTCCCGAGCAAGTGGCGGAAAACG
CATGTCGCATGCTCTTGGAAGAAGTCAACAATGGTGGTTGTGTTGATTCT
AACCATAGTTGTCTGGCGCTTCTGTTCTGCGCTCTGGCAGATTCTGATTT
AAACCGGGTTCGAATCGGTCGATTAAGCGACGCCGCCATTCAGTTTATGC
GAGATCTGCGCTCCTTCTTTGGTGTGCAGTTTAAGATTCGCGTCTTTGGT
AATGCTGTAGCCGATGAAGCAAACTCCGAGAACTCAGAGGATTCAGATGA
TGAAGAACTCAAGAACACAAAAGAAGAAGGCGTCCTTCTTTCGTGCATTG
GCATCGGTTTATCAAATGTCGCTCGTCAACGCTTTTAA

Coding sequence (CDS) from alignment at ScGOVlb_3404:4105530..4106717+

>Gvermi12290.t1 ID=Gvermi12290.t1|Name=Gvermi12290.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1188bp|location=Sequence derived from alignment at ScGOVlb_3404:4105530..4106717+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTCGCCATAAAAGGAAAAGCCCTCACATTTACTGGTGGCCATTTTCT
TCGCTACCGACTGGTGCTCGCCACGCTTTCATCAAGACCAGTGATAATAA
ACTCTATACGAGAAGATGATGCACAGTTTCCGGGCCTTTCACAGTCAGAG
ATATGTTTCATTCGGCTTTTGGACAAAGTTACCAGCGGAACTCTCATAAA
AATCAACGCGACAGGAACAACTATATCGTACACTCCAGGAATTCTAATCG
GTGGAAATCGCATTGTTCATGATTGTCATGTTTCACGTTCGATTTCCTAT
TATCTTGAACCGCTTTTGATGCTCGCTCCCTTTGCGAAGCGTTCTATAGA
TATCACCCTTAGAGGCGTGACCCACACGACTACTGATGTTTGTATTGACA
CAACTGCTACTGTTTCCGTTCCACTCTTACGCCGCCTTACCATAGGCACA
CCTCTGCAACCGCAACTGCAAGTTAGGAGACGCTCAATATCAAGTGGCGA
AACAAATGGCAACTGCAATGGCGGGCTTGTTCAGTTTCGATGCGACACTC
TAAACTCAAAGATAAAACCAATAGAACTCATAGAGGCAGGCTTCGTGAAG
AGGATCAGAGGCATCGCATTTGCAAACCGGGCTTCACCGGGACACATTTC
GCGCATGGTAGATGTCGTTCGACGCATATTCAATCGATTTACGCCCGATG
TTTATATACATACGGATCATAACAACCGGGAAGCCTGTGGAATTGGGTTT
GGACTTCATCTTGTTGCCGAAACCACTGAAGGCTGTCTCGTAGGGGCAGA
TTGGTCAAACTCCAGTGCACAGACGACTCCCGAGCAAGTGGCGGAAAACG
CATGTCGCATGCTCTTGGAAGAAGTCAACAATGGTGGTTGTGTTGATTCT
AACCATAGTTGTCTGGCGCTTCTGTTCTGCGCTCTGGCAGATTCTGATTT
AAACCGGGTTCGAATCGGTCGATTAAGCGACGCCGCCATTCAGTTTATGC
GAGATCTGCGCTCCTTCTTTGGTGTGCAGTTTAAGATTCGCGTCTTTGGT
AATGCTGTAGCCGATGAAGCAAACTCCGAGAACTCAGAGGATTCAGATGA
TGAAGAACTCAAGAACACAAAAGAAGAAGGCGTCCTTCTTTCGTGCATTG
GCATCGGTTTATCAAATGTCGCTCGTCAACGCTTTTAA