Gvermi12289.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12289.t1
Unique NameGvermi12289.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length220
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4104108..4104767 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog192875.XP_004344375.1
Preferred nameVPS37C
PFAMsMod_r
Max annot lvl2759|Eukaryota
KEGG koko:K09579,ko:K12185
KEGG Pathwayko04144,map04144
KEGG ModuleM00409
GOsGO:0000813,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005768,GO:0005770,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0005886,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006914,GO:0006996,GO:0007032,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010008,GO:0010256,GO:0012505,GO:0015630,GO:0016020,GO:0016032,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016236,GO:0019058,GO:0019068,GO:0019538,GO:0019941,GO:0022607,GO:0030163,GO:0030496,GO:0031090,GO:0031410,GO:0031902,GO:0031974,GO:0031981,GO:0031982,GO:0032801,GO:0032991,GO:0036257,GO:0036258,GO:0036452,GO:0039702,GO:0040012,GO:0040017,GO:0043112,GO:0043162,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043632,GO:0043900,GO:0043902,GO:0043903,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044430,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0046755,GO:0046907,GO:0048306,GO:0048518,GO:0048524,GO:0050789,GO:0050792,GO:0051179,GO:0051234,GO:0051603,GO:0051641,GO:0051649,GO:0051704,GO:0061919,GO:0065007,GO:0070013,GO:0070925,GO:0071704,GO:0071840,GO:0071944,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:1901564,GO:1901565,GO:1901575,GO:1902186,GO:1902188,GO:1903772,GO:1903774,GO:1903900,GO:1903902
Evalue4.88e-06
EggNOG OGsKOG3270@1|root,KOG3270@2759|Eukaryota
EC5.2.1.8
Descriptionendosome transport via multivesicular body sorting pathway
COG categoryU
BRITEko00000,ko00001,ko00002,ko01000,ko03110,ko04131,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12289Gvermi12289Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4104108..4104767 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12289.t1.stop1Gvermi12289.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4104108..4104110 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12289.t1.CDS1Gvermi12289.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4104108..4104767 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12289.t1.exon1Gvermi12289.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4104108..4104767 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12289.t1.start1Gvermi12289.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4104765..4104767 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12289.t1Gvermi12289.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4104108..4104767 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12289.t1 ID=Gvermi12289.t1|Name=Gvermi12289.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=220bp
MWDRDDISNRNSHRTNPSSVENARIEMNAQFQTSSRSQELSNSADGIPDA
PRAFPELESMSLRDLKVLHEERARFDDFVSKHHYQQQLDSIISRERNSVE
AFKREHTTISARMDEALDEEAITKLHENIANLEKEVDALQKEKDEWMEQN
SPERLMERLRIAINESETKSEALEKSMLSSSMRFDEFLSQYIACREKYHE
RLWKLEQLQKELKKKSFGR*
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spliced messenger RNA

>Gvermi12289.t1 ID=Gvermi12289.t1|Name=Gvermi12289.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=660bp|location=Sequence derived from alignment at ScGOVlb_3404:4104108..4104767- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGGATAGGGACGACATCTCCAATCGTAACTCACATCGTACTAACCC
CTCCTCTGTTGAAAACGCCAGAATAGAGATGAACGCACAGTTTCAAACTT
CCTCGAGGTCACAAGAGTTGAGTAATTCCGCCGACGGTATTCCAGATGCG
CCGAGGGCTTTTCCAGAGTTGGAGTCCATGTCCTTAAGGGATTTGAAGGT
GCTCCACGAGGAAAGGGCTCGTTTCGATGACTTTGTGTCAAAACACCACT
ATCAACAACAGCTTGACAGCATAATTTCGCGAGAAAGGAACAGCGTCGAA
GCATTCAAACGAGAACATACTACAATTTCTGCTAGAATGGATGAAGCATT
AGACGAAGAGGCAATCACAAAATTACACGAAAACATCGCAAACCTTGAAA
AAGAGGTGGACGCACTTCAGAAGGAGAAAGATGAATGGATGGAACAGAAT
TCGCCAGAGCGGCTGATGGAACGACTGCGAATTGCCATCAATGAGTCTGA
AACAAAGTCGGAAGCCTTGGAGAAGTCAATGTTATCAAGCTCAATGCGTT
TTGACGAATTCCTCTCCCAATACATTGCTTGTAGAGAAAAGTACCATGAG
CGATTATGGAAGTTGGAACAATTGCAGAAGGAGTTGAAGAAAAAATCTTT
TGGTCGGTAA
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protein sequence of Gvermi12289.t1

>Gvermi12289.t1 ID=Gvermi12289.t1|Name=Gvermi12289.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=220bp
MWDRDDISNRNSHRTNPSSVENARIEMNAQFQTSSRSQELSNSADGIPDA
PRAFPELESMSLRDLKVLHEERARFDDFVSKHHYQQQLDSIISRERNSVE
AFKREHTTISARMDEALDEEAITKLHENIANLEKEVDALQKEKDEWMEQN
SPERLMERLRIAINESETKSEALEKSMLSSSMRFDEFLSQYIACREKYHE
RLWKLEQLQKELKKKSFGR*
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mRNA from alignment at ScGOVlb_3404:4104108..4104767-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12289.t1 ID=Gvermi12289.t1|Name=Gvermi12289.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=660bp|location=Sequence derived from alignment at ScGOVlb_3404:4104108..4104767- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTGGGATAGGGACGACATCTCCAATCGTAACTCACATCGTACTAACCC
CTCCTCTGTTGAAAACGCCAGAATAGAGATGAACGCACAGTTTCAAACTT
CCTCGAGGTCACAAGAGTTGAGTAATTCCGCCGACGGTATTCCAGATGCG
CCGAGGGCTTTTCCAGAGTTGGAGTCCATGTCCTTAAGGGATTTGAAGGT
GCTCCACGAGGAAAGGGCTCGTTTCGATGACTTTGTGTCAAAACACCACT
ATCAACAACAGCTTGACAGCATAATTTCGCGAGAAAGGAACAGCGTCGAA
GCATTCAAACGAGAACATACTACAATTTCTGCTAGAATGGATGAAGCATT
AGACGAAGAGGCAATCACAAAATTACACGAAAACATCGCAAACCTTGAAA
AAGAGGTGGACGCACTTCAGAAGGAGAAAGATGAATGGATGGAACAGAAT
TCGCCAGAGCGGCTGATGGAACGACTGCGAATTGCCATCAATGAGTCTGA
AACAAAGTCGGAAGCCTTGGAGAAGTCAATGTTATCAAGCTCAATGCGTT
TTGACGAATTCCTCTCCCAATACATTGCTTGTAGAGAAAAGTACCATGAG
CGATTATGGAAGTTGGAACAATTGCAGAAGGAGTTGAAGAAAAAATCTTT
TGGTCGGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4104108..4104767-

>Gvermi12289.t1 ID=Gvermi12289.t1|Name=Gvermi12289.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=660bp|location=Sequence derived from alignment at ScGOVlb_3404:4104108..4104767- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTGGGATAGGGACGACATCTCCAATCGTAACTCACATCGTACTAACCC
CTCCTCTGTTGAAAACGCCAGAATAGAGATGAACGCACAGTTTCAAACTT
CCTCGAGGTCACAAGAGTTGAGTAATTCCGCCGACGGTATTCCAGATGCG
CCGAGGGCTTTTCCAGAGTTGGAGTCCATGTCCTTAAGGGATTTGAAGGT
GCTCCACGAGGAAAGGGCTCGTTTCGATGACTTTGTGTCAAAACACCACT
ATCAACAACAGCTTGACAGCATAATTTCGCGAGAAAGGAACAGCGTCGAA
GCATTCAAACGAGAACATACTACAATTTCTGCTAGAATGGATGAAGCATT
AGACGAAGAGGCAATCACAAAATTACACGAAAACATCGCAAACCTTGAAA
AAGAGGTGGACGCACTTCAGAAGGAGAAAGATGAATGGATGGAACAGAAT
TCGCCAGAGCGGCTGATGGAACGACTGCGAATTGCCATCAATGAGTCTGA
AACAAAGTCGGAAGCCTTGGAGAAGTCAATGTTATCAAGCTCAATGCGTT
TTGACGAATTCCTCTCCCAATACATTGCTTGTAGAGAAAAGTACCATGAG
CGATTATGGAAGTTGGAACAATTGCAGAAGGAGTTGAAGAAAAAATCTTT
TGGTCGGTAA
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