Gvermi12287.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12287.t1
Unique NameGvermi12287.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length261
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4099572..4100354 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5057.CADACLAP00001196
PFAMsCyt-b5,FAD_binding_6,NAD_binding_1
Max annot lvl4751|Fungi
KEGG koko:K00326
KEGG ReactionR00100
KEGG Pathwayko00520,map00520
Evalue2.19e-11
EggNOG OGsCOG0543@1|root,COG5274@1|root,KOG0534@2759|Eukaryota,KOG0537@2759|Eukaryota,38GQ8@33154|Opisthokonta,3P12R@4751|Fungi,3QK4A@4890|Ascomycota,20FQA@147545|Eurotiomycetes,3S7SH@5042|Eurotiales
EC1.6.2.2
Descriptionb-5 reductase
COG categoryC
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12287Gvermi12287Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4099572..4100354 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12287.t1.start1Gvermi12287.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4099572..4099574 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12287.t1.CDS1Gvermi12287.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4099572..4100354 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12287.t1.exon1Gvermi12287.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4099572..4100354 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12287.t1.stop1Gvermi12287.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4100352..4100354 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12287.t1Gvermi12287.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4099572..4100354 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12287.t1 ID=Gvermi12287.t1|Name=Gvermi12287.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=261bp
MEDVPSRTIRQMRPLPPFHSYPLIAKKTLVPPSTEKGILPVRLFTFAYAP
DMSLSFKHTEHVKIMRPGPFKPRSYTPTSESSRTGSFDLVLKIYPGGTSE
WLDGCAIGSRVCVFGPLPLAIKPVVYNPGPFVVVIALGIGVTKGWVCARE
ELGCDRLVTLIYSVRYREEAIFGCEMEQLQQSYPRHFTLQMNASREQVEG
WAHGHVDDALIRKCVGQYAQSDTRFMVVGTKEMMKSVWKTLGRMGYTRKA
HALSRKRIKS*
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spliced messenger RNA

>Gvermi12287.t1 ID=Gvermi12287.t1|Name=Gvermi12287.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=783bp|location=Sequence derived from alignment at ScGOVlb_3404:4099572..4100354+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGACGTACCATCGCGAACGATTCGACAGATGCGCCCTCTCCCTCC
CTTTCATTCCTATCCATTGATCGCCAAAAAAACACTAGTTCCTCCGTCTA
CCGAGAAAGGAATTCTCCCTGTACGCTTGTTTACGTTTGCGTATGCTCCG
GACATGTCCCTGTCCTTTAAGCACACTGAGCATGTTAAAATAATGCGACC
AGGTCCGTTCAAGCCGAGAAGTTACACTCCCACGAGTGAATCATCGAGAA
CGGGTTCGTTTGATCTTGTGTTGAAAATCTACCCCGGTGGAACGAGTGAG
TGGTTAGATGGATGCGCTATTGGATCGCGGGTGTGTGTTTTTGGCCCTCT
GCCTCTCGCAATTAAACCGGTTGTGTACAATCCGGGGCCCTTCGTGGTTG
TCATAGCGCTCGGCATAGGCGTGACAAAAGGATGGGTGTGTGCACGGGAG
GAACTTGGGTGTGATAGATTGGTGACGTTAATATACTCTGTTCGCTACAG
AGAGGAAGCGATTTTCGGATGTGAAATGGAGCAACTGCAACAATCATATC
CGAGACATTTCACATTGCAAATGAATGCGAGCAGGGAGCAAGTAGAAGGC
TGGGCGCACGGTCACGTTGACGACGCGCTTATTCGGAAATGTGTCGGGCA
ATATGCACAGAGCGATACGCGATTTATGGTCGTCGGAACCAAGGAGATGA
TGAAGTCGGTGTGGAAAACGCTGGGGCGGATGGGGTACACTCGAAAGGCT
CATGCGTTGAGCCGGAAACGAATCAAGTCGTGA
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protein sequence of Gvermi12287.t1

>Gvermi12287.t1 ID=Gvermi12287.t1|Name=Gvermi12287.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=261bp
MEDVPSRTIRQMRPLPPFHSYPLIAKKTLVPPSTEKGILPVRLFTFAYAP
DMSLSFKHTEHVKIMRPGPFKPRSYTPTSESSRTGSFDLVLKIYPGGTSE
WLDGCAIGSRVCVFGPLPLAIKPVVYNPGPFVVVIALGIGVTKGWVCARE
ELGCDRLVTLIYSVRYREEAIFGCEMEQLQQSYPRHFTLQMNASREQVEG
WAHGHVDDALIRKCVGQYAQSDTRFMVVGTKEMMKSVWKTLGRMGYTRKA
HALSRKRIKS*
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mRNA from alignment at ScGOVlb_3404:4099572..4100354+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12287.t1 ID=Gvermi12287.t1|Name=Gvermi12287.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=783bp|location=Sequence derived from alignment at ScGOVlb_3404:4099572..4100354+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAGGACGTACCATCGCGAACGATTCGACAGATGCGCCCTCTCCCTCC
CTTTCATTCCTATCCATTGATCGCCAAAAAAACACTAGTTCCTCCGTCTA
CCGAGAAAGGAATTCTCCCTGTACGCTTGTTTACGTTTGCGTATGCTCCG
GACATGTCCCTGTCCTTTAAGCACACTGAGCATGTTAAAATAATGCGACC
AGGTCCGTTCAAGCCGAGAAGTTACACTCCCACGAGTGAATCATCGAGAA
CGGGTTCGTTTGATCTTGTGTTGAAAATCTACCCCGGTGGAACGAGTGAG
TGGTTAGATGGATGCGCTATTGGATCGCGGGTGTGTGTTTTTGGCCCTCT
GCCTCTCGCAATTAAACCGGTTGTGTACAATCCGGGGCCCTTCGTGGTTG
TCATAGCGCTCGGCATAGGCGTGACAAAAGGATGGGTGTGTGCACGGGAG
GAACTTGGGTGTGATAGATTGGTGACGTTAATATACTCTGTTCGCTACAG
AGAGGAAGCGATTTTCGGATGTGAAATGGAGCAACTGCAACAATCATATC
CGAGACATTTCACATTGCAAATGAATGCGAGCAGGGAGCAAGTAGAAGGC
TGGGCGCACGGTCACGTTGACGACGCGCTTATTCGGAAATGTGTCGGGCA
ATATGCACAGAGCGATACGCGATTTATGGTCGTCGGAACCAAGGAGATGA
TGAAGTCGGTGTGGAAAACGCTGGGGCGGATGGGGTACACTCGAAAGGCT
CATGCGTTGAGCCGGAAACGAATCAAGTCGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4099572..4100354+

>Gvermi12287.t1 ID=Gvermi12287.t1|Name=Gvermi12287.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=783bp|location=Sequence derived from alignment at ScGOVlb_3404:4099572..4100354+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAGGACGTACCATCGCGAACGATTCGACAGATGCGCCCTCTCCCTCC
CTTTCATTCCTATCCATTGATCGCCAAAAAAACACTAGTTCCTCCGTCTA
CCGAGAAAGGAATTCTCCCTGTACGCTTGTTTACGTTTGCGTATGCTCCG
GACATGTCCCTGTCCTTTAAGCACACTGAGCATGTTAAAATAATGCGACC
AGGTCCGTTCAAGCCGAGAAGTTACACTCCCACGAGTGAATCATCGAGAA
CGGGTTCGTTTGATCTTGTGTTGAAAATCTACCCCGGTGGAACGAGTGAG
TGGTTAGATGGATGCGCTATTGGATCGCGGGTGTGTGTTTTTGGCCCTCT
GCCTCTCGCAATTAAACCGGTTGTGTACAATCCGGGGCCCTTCGTGGTTG
TCATAGCGCTCGGCATAGGCGTGACAAAAGGATGGGTGTGTGCACGGGAG
GAACTTGGGTGTGATAGATTGGTGACGTTAATATACTCTGTTCGCTACAG
AGAGGAAGCGATTTTCGGATGTGAAATGGAGCAACTGCAACAATCATATC
CGAGACATTTCACATTGCAAATGAATGCGAGCAGGGAGCAAGTAGAAGGC
TGGGCGCACGGTCACGTTGACGACGCGCTTATTCGGAAATGTGTCGGGCA
ATATGCACAGAGCGATACGCGATTTATGGTCGTCGGAACCAAGGAGATGA
TGAAGTCGGTGTGGAAAACGCTGGGGCGGATGGGGTACACTCGAAAGGCT
CATGCGTTGAGCCGGAAACGAATCAAGTCGTGA
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