Gvermi12286.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12286.t1
Unique Name	Gvermi12286.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	455

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:4096818..4098182 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	756067.MicvaDRAFT_4187
Preferred name	ctpB
PFAMs	PDZ,PDZ_2,Peptidase_S41
Max annot lvl	1117\|Cyanobacteria
KEGG ko	ko:K03797
Evalue	1.05e-63
EggNOG OGs	COG0793@1\|root,COG0793@2\|Bacteria,1G031@1117\|Cyanobacteria,1H91G@1150\|Oscillatoriales
EC	3.4.21.102
Description	Belongs to the peptidase S41A family
COG category	M
BRITE	ko00000,ko01000,ko01002

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12286	Gvermi12286	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3404 4096818..4098182 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12286.t1.start1	Gvermi12286.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_3404 4096818..4096820 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12286.t1.CDS1	Gvermi12286.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3404 4096818..4098182 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12286.t1.exon1	Gvermi12286.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3404 4096818..4098182 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12286.t1.stop1	Gvermi12286.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_3404 4098180..4098182 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12286.t1	Gvermi12286.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3404 4096818..4098182 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3404:4096818..4098182+
coding sequence from alignment at ScGOVlb_3404:4096818..4098182+

mRNA sequence

>Gvermi12286.t1 ID=Gvermi12286.t1|Name=Gvermi12286.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=455bp
MKLKLKTCFICPTASAFNIPLRKVAVSTVLAAALYSLPAHPVRAAPAIDV
VRDTEHEFAEQAWKFVNDYYLDPSFNHLDWQSQLEKLLNAPLPDRASTYR
ALRKAVARLDDRYTRVLDPKQMEQLRKFDISGVGLLLSNDASGRLIVATE
PPKNTAAAKAGVKRGDQVLEVEGRNVTDVSPFEVAEWMQGPDGSAMQIRF
RDRGMTTLTRKYQAESSPAAVTKVATVNRSDGRMGYIRLSEFRASGRTEV
SNALQKLLADGAEWIVIDLRGNHGGVFEGALEIAGLLEGDGQTVARVSGR
NTRAGGLQESYKSRFVKGENFIDDKIDLAVLIDNESASSSEVLAGGLRDS
CRAALVGERSFGKGVIQGVFGLADGGGIVVTIAEYRTPRGDKIDGIGIPA
DIPGEYGGLDKFLRYLGVTRTDEKGITFSRQQVRDVTHYCQERQNIPETI
SETI*

spliced messenger RNA

>Gvermi12286.t1 ID=Gvermi12286.t1|Name=Gvermi12286.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1365bp|location=Sequence derived from alignment at ScGOVlb_3404:4096818..4098182+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGTTGAAGTTGAAGACCTGTTTCATTTGTCCAACAGCCTCCGCTTT
TAATATACCGCTTCGAAAAGTTGCTGTTTCCACAGTTCTAGCTGCCGCTT
TATATTCTTTACCTGCTCACCCTGTCCGAGCTGCACCAGCGATAGACGTT
GTACGAGACACTGAGCATGAATTTGCTGAGCAGGCATGGAAGTTTGTCAA
TGACTACTACCTAGACCCCTCCTTCAATCATTTAGATTGGCAAAGCCAGC
TTGAAAAGCTTCTCAATGCGCCACTGCCTGATCGAGCTTCCACATACAGA
GCTCTGCGAAAGGCCGTTGCAAGACTGGACGACCGCTACACCCGTGTGTT
GGACCCCAAACAAATGGAACAGCTCCGAAAGTTTGACATATCTGGTGTTG
GGCTACTACTGAGCAACGACGCGTCGGGCCGTCTCATCGTTGCGACTGAA
CCGCCGAAAAATACTGCTGCCGCCAAAGCGGGTGTCAAGCGCGGTGATCA
GGTTTTAGAAGTTGAGGGTCGAAATGTAACCGATGTTTCACCGTTTGAAG
TTGCCGAATGGATGCAAGGACCAGACGGAAGCGCTATGCAGATACGTTTT
CGAGATCGGGGCATGACAACTCTCACGCGCAAGTATCAAGCAGAAAGCTC
GCCTGCAGCTGTAACCAAGGTTGCAACTGTCAATCGTTCAGATGGACGAA
TGGGATACATTCGCCTGTCTGAGTTCAGGGCGTCCGGCCGTACAGAAGTT
TCAAACGCGTTACAAAAGCTTTTGGCGGATGGTGCTGAGTGGATTGTCAT
CGATTTACGAGGAAACCATGGTGGGGTCTTTGAGGGTGCCTTAGAGATCG
CTGGGTTGTTAGAGGGAGATGGTCAAACCGTGGCTCGAGTAAGCGGTCGA
AACACGCGCGCTGGAGGTTTGCAAGAGTCATACAAATCCCGTTTTGTCAA
AGGAGAAAACTTTATTGATGACAAAATCGACCTTGCTGTGCTAATCGATA
ATGAAAGTGCAAGCAGCAGTGAGGTATTGGCTGGGGGCCTTCGGGATAGT
TGCAGAGCAGCTCTTGTGGGAGAAAGAAGTTTTGGAAAAGGTGTCATACA
AGGGGTGTTTGGCCTTGCGGATGGAGGAGGAATTGTGGTTACAATCGCGG
AATACCGAACTCCGAGGGGAGATAAGATTGATGGTATCGGTATTCCAGCC
GATATACCCGGAGAGTATGGGGGTCTAGATAAGTTTCTCAGGTATCTTGG
AGTAACAAGAACAGACGAAAAAGGGATTACTTTTTCACGACAACAAGTAA
GAGACGTAACCCACTACTGTCAAGAACGACAGAACATTCCCGAAACGATT
TCAGAGACCATCTAA

protein sequence of Gvermi12286.t1

>Gvermi12286.t1 ID=Gvermi12286.t1|Name=Gvermi12286.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=455bp
MKLKLKTCFICPTASAFNIPLRKVAVSTVLAAALYSLPAHPVRAAPAIDV
VRDTEHEFAEQAWKFVNDYYLDPSFNHLDWQSQLEKLLNAPLPDRASTYR
ALRKAVARLDDRYTRVLDPKQMEQLRKFDISGVGLLLSNDASGRLIVATE
PPKNTAAAKAGVKRGDQVLEVEGRNVTDVSPFEVAEWMQGPDGSAMQIRF
RDRGMTTLTRKYQAESSPAAVTKVATVNRSDGRMGYIRLSEFRASGRTEV
SNALQKLLADGAEWIVIDLRGNHGGVFEGALEIAGLLEGDGQTVARVSGR
NTRAGGLQESYKSRFVKGENFIDDKIDLAVLIDNESASSSEVLAGGLRDS
CRAALVGERSFGKGVIQGVFGLADGGGIVVTIAEYRTPRGDKIDGIGIPA
DIPGEYGGLDKFLRYLGVTRTDEKGITFSRQQVRDVTHYCQERQNIPETI
SETI*

mRNA from alignment at ScGOVlb_3404:4096818..4098182+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12286.t1 ID=Gvermi12286.t1|Name=Gvermi12286.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1365bp|location=Sequence derived from alignment at ScGOVlb_3404:4096818..4098182+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGTTGAAGTTGAAGACCTGTTTCATTTGTCCAACAGCCTCCGCTTT
TAATATACCGCTTCGAAAAGTTGCTGTTTCCACAGTTCTAGCTGCCGCTT
TATATTCTTTACCTGCTCACCCTGTCCGAGCTGCACCAGCGATAGACGTT
GTACGAGACACTGAGCATGAATTTGCTGAGCAGGCATGGAAGTTTGTCAA
TGACTACTACCTAGACCCCTCCTTCAATCATTTAGATTGGCAAAGCCAGC
TTGAAAAGCTTCTCAATGCGCCACTGCCTGATCGAGCTTCCACATACAGA
GCTCTGCGAAAGGCCGTTGCAAGACTGGACGACCGCTACACCCGTGTGTT
GGACCCCAAACAAATGGAACAGCTCCGAAAGTTTGACATATCTGGTGTTG
GGCTACTACTGAGCAACGACGCGTCGGGCCGTCTCATCGTTGCGACTGAA
CCGCCGAAAAATACTGCTGCCGCCAAAGCGGGTGTCAAGCGCGGTGATCA
GGTTTTAGAAGTTGAGGGTCGAAATGTAACCGATGTTTCACCGTTTGAAG
TTGCCGAATGGATGCAAGGACCAGACGGAAGCGCTATGCAGATACGTTTT
CGAGATCGGGGCATGACAACTCTCACGCGCAAGTATCAAGCAGAAAGCTC
GCCTGCAGCTGTAACCAAGGTTGCAACTGTCAATCGTTCAGATGGACGAA
TGGGATACATTCGCCTGTCTGAGTTCAGGGCGTCCGGCCGTACAGAAGTT
TCAAACGCGTTACAAAAGCTTTTGGCGGATGGTGCTGAGTGGATTGTCAT
CGATTTACGAGGAAACCATGGTGGGGTCTTTGAGGGTGCCTTAGAGATCG
CTGGGTTGTTAGAGGGAGATGGTCAAACCGTGGCTCGAGTAAGCGGTCGA
AACACGCGCGCTGGAGGTTTGCAAGAGTCATACAAATCCCGTTTTGTCAA
AGGAGAAAACTTTATTGATGACAAAATCGACCTTGCTGTGCTAATCGATA
ATGAAAGTGCAAGCAGCAGTGAGGTATTGGCTGGGGGCCTTCGGGATAGT
TGCAGAGCAGCTCTTGTGGGAGAAAGAAGTTTTGGAAAAGGTGTCATACA
AGGGGTGTTTGGCCTTGCGGATGGAGGAGGAATTGTGGTTACAATCGCGG
AATACCGAACTCCGAGGGGAGATAAGATTGATGGTATCGGTATTCCAGCC
GATATACCCGGAGAGTATGGGGGTCTAGATAAGTTTCTCAGGTATCTTGG
AGTAACAAGAACAGACGAAAAAGGGATTACTTTTTCACGACAACAAGTAA
GAGACGTAACCCACTACTGTCAAGAACGACAGAACATTCCCGAAACGATT
TCAGAGACCATCTAA

Coding sequence (CDS) from alignment at ScGOVlb_3404:4096818..4098182+

>Gvermi12286.t1 ID=Gvermi12286.t1|Name=Gvermi12286.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1365bp|location=Sequence derived from alignment at ScGOVlb_3404:4096818..4098182+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGTTGAAGTTGAAGACCTGTTTCATTTGTCCAACAGCCTCCGCTTT
TAATATACCGCTTCGAAAAGTTGCTGTTTCCACAGTTCTAGCTGCCGCTT
TATATTCTTTACCTGCTCACCCTGTCCGAGCTGCACCAGCGATAGACGTT
GTACGAGACACTGAGCATGAATTTGCTGAGCAGGCATGGAAGTTTGTCAA
TGACTACTACCTAGACCCCTCCTTCAATCATTTAGATTGGCAAAGCCAGC
TTGAAAAGCTTCTCAATGCGCCACTGCCTGATCGAGCTTCCACATACAGA
GCTCTGCGAAAGGCCGTTGCAAGACTGGACGACCGCTACACCCGTGTGTT
GGACCCCAAACAAATGGAACAGCTCCGAAAGTTTGACATATCTGGTGTTG
GGCTACTACTGAGCAACGACGCGTCGGGCCGTCTCATCGTTGCGACTGAA
CCGCCGAAAAATACTGCTGCCGCCAAAGCGGGTGTCAAGCGCGGTGATCA
GGTTTTAGAAGTTGAGGGTCGAAATGTAACCGATGTTTCACCGTTTGAAG
TTGCCGAATGGATGCAAGGACCAGACGGAAGCGCTATGCAGATACGTTTT
CGAGATCGGGGCATGACAACTCTCACGCGCAAGTATCAAGCAGAAAGCTC
GCCTGCAGCTGTAACCAAGGTTGCAACTGTCAATCGTTCAGATGGACGAA
TGGGATACATTCGCCTGTCTGAGTTCAGGGCGTCCGGCCGTACAGAAGTT
TCAAACGCGTTACAAAAGCTTTTGGCGGATGGTGCTGAGTGGATTGTCAT
CGATTTACGAGGAAACCATGGTGGGGTCTTTGAGGGTGCCTTAGAGATCG
CTGGGTTGTTAGAGGGAGATGGTCAAACCGTGGCTCGAGTAAGCGGTCGA
AACACGCGCGCTGGAGGTTTGCAAGAGTCATACAAATCCCGTTTTGTCAA
AGGAGAAAACTTTATTGATGACAAAATCGACCTTGCTGTGCTAATCGATA
ATGAAAGTGCAAGCAGCAGTGAGGTATTGGCTGGGGGCCTTCGGGATAGT
TGCAGAGCAGCTCTTGTGGGAGAAAGAAGTTTTGGAAAAGGTGTCATACA
AGGGGTGTTTGGCCTTGCGGATGGAGGAGGAATTGTGGTTACAATCGCGG
AATACCGAACTCCGAGGGGAGATAAGATTGATGGTATCGGTATTCCAGCC
GATATACCCGGAGAGTATGGGGGTCTAGATAAGTTTCTCAGGTATCTTGG
AGTAACAAGAACAGACGAAAAAGGGATTACTTTTTCACGACAACAAGTAA
GAGACGTAACCCACTACTGTCAAGAACGACAGAACATTCCCGAAACGATT
TCAGAGACCATCTAA